Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)
Identifieur interne : 001356 ( Istex/Corpus ); précédent : 001355; suivant : 001357Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)
Auteurs : Kenji Saitoh ; Tetsuya Sado ; Michael H. Doosey ; Henry L. Bart Jr ; Jun G. Inoue ; Mutsumi Nishida ; Richard L. Mayden ; Masaki MiyaSource :
- Zoological Journal of the Linnean Society [ 0024-4082 ] ; 2011-03.
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- KwdEn :
Abstract
We analysed mitochondrial genomic sequences under maximum likelihood (ML) criteria to explore phylogenetic relationships, and performed historical biogeography analysis with divergence time estimation for fishes of Order Cypriniformes (Actinopterygii: Ostariophysi). We added mitogenomes for eight new cypriniforms and one outgroup to a data set comprising 53 and six outgroup mitogenomes from a previous study to make our taxon sampling geographically representative. The ML tree reconfirmed monophyly of four basal cypriniform clades (cyprinids, catostomids, gyrinocheilids, and loaches including balitorids and cobitids). It also recovered 18 monophyletic groups largely equivalent to the subfamilial rank, and resolved interrelationships among most of these subfamilial clades. However, lower bootstrap support for the ML tree and higher approximately unbiased (au) probabilities for alternative topologies around some branches indicated problems that still need to be resolved. Historical taxon biogeography by dispersal‐vicariance analysis, a parsimonious reconstruction of past ranges, and gain‐loss ratio analysis at the subfamilial level, identified the geographical region of basal cypriniform divergence as southern Asia. Bayesian divergence time analysis dated the basal otophysan split, which gave birth to Order Cypriniformes, to the late Triassic around 219.5 Mya. The basal cypriniform divergence took place during the late Jurassic around 155.9 Mya. These dates coincide with the onset and completion, respectively, of the Pangaean breakup. Taking biogeographical analysis and node dating into account, we consider the most likely candidate for the initial geographical range of Order Cypriniformes to be the south‐eastern area of Mesozoic Laurasia (present‐day southern Asia, excluding the Indian subcontinent). We also briefly discuss ecological implications of the group's divergence.
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DOI: 10.1111/j.1096-3642.2010.00651.x
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Bayesian divergence time analysis dated the basal otophysan split, which gave birth to Order Cypriniformes, to the late Triassic around 219.5 Mya. The basal cypriniform divergence took place during the late Jurassic around 155.9 Mya. These dates coincide with the onset and completion, respectively, of the Pangaean breakup. Taking biogeographical analysis and node dating into account, we consider the most likely candidate for the initial geographical range of Order Cypriniformes to be the south‐eastern area of Mesozoic Laurasia (present‐day southern Asia, excluding the Indian subcontinent). 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USA</affiliation></author><author xml:id="author-5"><persName><forename type="first">JUN G.</forename><surname>INOUE</surname></persName><note type="biography">Current address: Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</note><affiliation>Current address: Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</affiliation><affiliation>Department of Biology, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK</affiliation></author><author xml:id="author-6"><persName><forename type="first">MUTSUMI</forename><surname>NISHIDA</surname></persName><affiliation>Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</affiliation></author><author xml:id="author-7"><persName><forename type="first">RICHARD L.</forename><surname>MAYDEN</surname></persName><affiliation>Department of Biology, Saint Louis 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We added mitogenomes for eight new cypriniforms and one outgroup to a data set comprising 53 and six outgroup mitogenomes from a previous study to make our taxon sampling geographically representative. The ML tree reconfirmed monophyly of four basal cypriniform clades (cyprinids, catostomids, gyrinocheilids, and loaches including balitorids and cobitids). It also recovered 18 monophyletic groups largely equivalent to the subfamilial rank, and resolved interrelationships among most of these subfamilial clades. However, lower bootstrap support for the ML tree and higher approximately unbiased (au) probabilities for alternative topologies around some branches indicated problems that still need to be resolved. Historical taxon biogeography by dispersal‐vicariance analysis, a parsimonious reconstruction of past ranges, and gain‐loss ratio analysis at the subfamilial level, identified the geographical region of basal cypriniform divergence as southern Asia. Bayesian divergence time analysis dated the basal otophysan split, which gave birth to Order Cypriniformes, to the late Triassic around 219.5 Mya. The basal cypriniform divergence took place during the late Jurassic around 155.9 Mya. These dates coincide with the onset and completion, respectively, of the Pangaean breakup. Taking biogeographical analysis and node dating into account, we consider the most likely candidate for the initial geographical range of Order Cypriniformes to be the south‐eastern area of Mesozoic Laurasia (present‐day southern Asia, excluding the Indian subcontinent). We also briefly discuss ecological implications of the group's divergence.</p></abstract><abstract><p>© 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 161, 633–662.</p></abstract><textClass xml:lang="en"><keywords scheme="keyword"><list><head>keywords</head><item><term>Balitoridae</term></item><item><term>Catostomidae</term></item><item><term>Cobitidae</term></item><item><term>Cyprinidae</term></item><item><term>divergence time</term></item><item><term>likelihood comparison</term></item><item><term>maximum likelihood phylogeny</term></item><item><term>zoogeography</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="2011-03">Published</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><extension>txt</extension><original>false</original><mimetype>text/plain</mimetype><uri>https://api.istex.fr/document/AC202FB3A9F669C764CCB44DEA96AF3C4FBDB12C/fulltext/txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Wiley, elements deleted: body"><istex:xmlDeclaration>version="1.0" encoding="UTF-8" standalone="yes"</istex:xmlDeclaration><istex:document><component version="2.0" type="serialArticle" xml:lang="en"><header><publicationMeta level="product"><publisherInfo><publisherName>Blackwell Publishing Ltd</publisherName><publisherLoc>Oxford, UK</publisherLoc></publisherInfo><doi origin="wiley" registered="yes">10.1111/(ISSN)1096-3642</doi><issn type="print">0024-4082</issn><issn type="electronic">1096-3642</issn><idGroup><id type="product" value="ZOJ"></id><id type="publisherDivision" value="ST"></id></idGroup><titleGroup><title type="main" sort="ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY">Zoological Journal of the Linnean Society</title></titleGroup></publicationMeta><publicationMeta level="part" position="03103"><doi origin="wiley">10.1111/zoj.2011.161.issue-3</doi><numberingGroup><numbering type="journalVolume" number="161">161</numbering><numbering type="journalIssue" number="3">3</numbering></numberingGroup><coverDate startDate="2011-03">March 2011</coverDate></publicationMeta><publicationMeta level="unit" type="article" position="8" status="forIssue"><doi origin="wiley">10.1111/j.1096-3642.2010.00651.x</doi><idGroup><id type="unit" value="ZOJ651"></id></idGroup><countGroup><count type="pageTotal" number="30"></count></countGroup><titleGroup><title type="tocHeading1">Original Articles</title></titleGroup><copyright>© 2011 The Linnean Society of London</copyright><eventGroup><event type="xmlConverted" agent="Converter:BPG_TO_WML3G version:2.4.7 mode:FullText" date="2011-02-24"></event><event type="firstOnline" date="2011-02-24"></event><event type="publishedOnlineFinalForm" date="2011-02-24"></event><event type="xmlConverted" agent="Converter:WILEY_ML3G_TO_WILEY_ML3GV2 version:3.8.8" date="2014-02-11"></event><event type="xmlConverted" agent="Converter:WML3G_To_WML3G version:4.1.7 mode:FullText,remove_FC" date="2014-11-04"></event></eventGroup><numberingGroup><numbering type="pageFirst" number="633">633</numbering><numbering type="pageLast" number="662">662</numbering></numberingGroup><correspondenceTo> E‐mail: <email>ksaitoh@affrc.go.jp</email></correspondenceTo><linkGroup><link type="toTypesetVersion" href="file:ZOJ.ZOJ651.pdf"></link></linkGroup></publicationMeta><contentMeta><unparsedEditorialHistory>Received 4 August 2009; revised 21 December 2009; accepted for publication 3 January 2010</unparsedEditorialHistory><countGroup><count type="figureTotal" number="5"></count><count type="tableTotal" number="11"></count><count type="formulaTotal" number="0"></count><count type="referenceTotal" number="162"></count><count type="wordTotal" number="16697"></count><count type="linksPubMed" number="0"></count><count type="linksCrossRef" number="0"></count></countGroup><titleGroup><title type="main">Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)</title><title type="shortAuthors">K. SAITOH <i>ET AL</i>.</title><title type="short">CYPRINIFORM MITOGENOMICS AND BIOGEOGRAPHY</title></titleGroup><creators><creator creatorRole="author" xml:id="cr1" affiliationRef="#a1" corresponding="yes"><personName><givenNames>KENJI</givenNames><familyName>SAITOH</familyName></personName></creator><creator creatorRole="author" xml:id="cr2" affiliationRef="#a2"><personName><givenNames>TETSUYA</givenNames><familyName>SADO</familyName></personName></creator><creator creatorRole="author" xml:id="cr3" affiliationRef="#a3" noteRef="#fn1"><personName><givenNames>MICHAEL H.</givenNames><familyName>DOOSEY</familyName></personName></creator><creator creatorRole="author" xml:id="cr4" affiliationRef="#a3"><personName><givenNames>HENRY L.</givenNames><familyName>BART Jr</familyName></personName></creator><creator creatorRole="author" xml:id="cr5" affiliationRef="#a4" noteRef="#fn2"><personName><givenNames>JUN G.</givenNames><familyName>INOUE</familyName></personName></creator><creator creatorRole="author" xml:id="cr6" affiliationRef="#a5"><personName><givenNames>MUTSUMI</givenNames><familyName>NISHIDA</familyName></personName></creator><creator creatorRole="author" xml:id="cr7" affiliationRef="#a6"><personName><givenNames>RICHARD L.</givenNames><familyName>MAYDEN</familyName></personName></creator><creator creatorRole="author" xml:id="cr8" affiliationRef="#a2"><personName><givenNames>MASAKI</givenNames><familyName>MIYA</familyName></personName></creator></creators><affiliationGroup><affiliation xml:id="a1" countryCode="JP"><unparsedAffiliation>National Research Institute of Fisheries Science, Fisheries Research Agency, 2‐12‐4 Fukuura, Kanazawa, Yokohama 236‐8648, Japan</unparsedAffiliation></affiliation><affiliation xml:id="a2" countryCode="JP"><unparsedAffiliation>Department of Zoology, Natural History Museum & Institute, Chiba, 955‐2 Aoba, Chuo, Chiba 260‐8682, Japan</unparsedAffiliation></affiliation><affiliation xml:id="a3" countryCode="US"><unparsedAffiliation>Tulane University Museum of Natural History, Wild Boar Road, Belle Chasse, LA 70037, USA</unparsedAffiliation></affiliation><affiliation xml:id="a4" countryCode="GB"><unparsedAffiliation>Department of Biology, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK</unparsedAffiliation></affiliation><affiliation xml:id="a5" countryCode="JP"><unparsedAffiliation>Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</unparsedAffiliation></affiliation><affiliation xml:id="a6" countryCode="US"><unparsedAffiliation>Department of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO 63103, USA</unparsedAffiliation></affiliation></affiliationGroup><keywordGroup xml:lang="en"><keyword xml:id="k1">Balitoridae</keyword><keyword xml:id="k2">Catostomidae</keyword><keyword xml:id="k3">Cobitidae</keyword><keyword xml:id="k4">Cyprinidae</keyword><keyword xml:id="k5">divergence time</keyword><keyword xml:id="k6">likelihood comparison</keyword><keyword xml:id="k7">maximum likelihood phylogeny</keyword><keyword xml:id="k8">zoogeography</keyword></keywordGroup><supportingInformation><p><b>Figure S1.</b> The Bayesian consensus tree topology (3 000 000 iteration with 25 500 burnin period) on 14 594 nucleotide sites of 60 Cypriniformes and six outgroups (Δ/nL with the ML tree = 21.0). Numbers at each branch indicate posterior probabilities. Asterisks indicate 100% posterior support.</p><p><b>Figure S2.</b> Taxon biogeography on second best trees. Figures above internal branches show geographical patterns inferred by dispersal‐vicariance analysis (DIVA), whereas those on the branches indicate patterns by simple parsimonious reconstruction.</p><p><b>Figure S3.</b> Estimated node dates (Myr) among 37 ingroups and 39 outgroups excluding the bottom (<i>Musterus</i>) along the maximum likelihood tree with outgroups whose relationships are according to recent literature (Inoue <i>et al</i>., 2003, 2005; Hurley <i>et al</i>., 2007; Lavoue <i>et al</i>., 2005, 2007, 2008).</p><p><b>Table S1.</b> Comparison of estimated ancestral areas for Cypriniformes (following Bremer, 1992) between the maximum likelihood and second best trees.</p><p><b>Table S2.</b> Comparison of estimated divergence times (Mya) and confidence ranges (95%) of their posterior distributions at each node between the maximum likelihood and second best trees.</p><supportingInfoItem><mediaResource alt="supporting info item" href="urn-x:wiley:00244082:media:zoj651:ZOJ_651_sm_Supp_Data"></mediaResource><caption>Supporting info item</caption></supportingInfoItem></supportingInformation><abstractGroup><abstract type="main" xml:lang="en"><p>We analysed mitochondrial genomic sequences under maximum likelihood (ML) criteria to explore phylogenetic relationships, and performed historical biogeography analysis with divergence time estimation for fishes of Order Cypriniformes (Actinopterygii: Ostariophysi). We added mitogenomes for eight new cypriniforms and one outgroup to a data set comprising 53 and six outgroup mitogenomes from a previous study to make our taxon sampling geographically representative. The ML tree reconfirmed monophyly of four basal cypriniform clades (cyprinids, catostomids, gyrinocheilids, and loaches including balitorids and cobitids). It also recovered 18 monophyletic groups largely equivalent to the subfamilial rank, and resolved interrelationships among most of these subfamilial clades. However, lower bootstrap support for the ML tree and higher approximately unbiased (<i>au</i>) probabilities for alternative topologies around some branches indicated problems that still need to be resolved. Historical taxon biogeography by dispersal‐vicariance analysis, a parsimonious reconstruction of past ranges, and gain‐loss ratio analysis at the subfamilial level, identified the geographical region of basal cypriniform divergence as southern Asia. Bayesian divergence time analysis dated the basal otophysan split, which gave birth to Order Cypriniformes, to the late Triassic around 219.5 Mya. The basal cypriniform divergence took place during the late Jurassic around 155.9 Mya. These dates coincide with the onset and completion, respectively, of the Pangaean breakup. Taking biogeographical analysis and node dating into account, we consider the most likely candidate for the initial geographical range of Order Cypriniformes to be the south‐eastern area of Mesozoic Laurasia (present‐day southern Asia, excluding the Indian subcontinent). We also briefly discuss ecological implications of the group's divergence.</p><p>© 2011 The Linnean Society of London, <i>Zoological Journal of the Linnean Society</i>, 2011, <b>161</b>, 633–662.</p></abstract></abstractGroup></contentMeta><noteGroup><note xml:id="fn1"><p> Current address: University of Kansas, Natural History Museum and Biodiversity Research Center, 1345 Jayhawk Blvd., Lawrence, KS66045, USA</p></note><note xml:id="fn2"><p> Current address: Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</p></note></noteGroup></header></component></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)</title></titleInfo><titleInfo type="abbreviated" lang="en"><title>CYPRINIFORM MITOGENOMICS AND BIOGEOGRAPHY</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)</title></titleInfo><name type="personal"><namePart type="given">KENJI</namePart><namePart type="family">SAITOH</namePart><affiliation>National Research Institute of Fisheries Science, Fisheries Research Agency, 2‐12‐4 Fukuura, Kanazawa, Yokohama 236‐8648, Japan</affiliation><affiliation>E-mail: ksaitoh@affrc.go.jp</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">TETSUYA</namePart><namePart type="family">SADO</namePart><affiliation>Department of Zoology, Natural History Museum & Institute, Chiba, 955‐2 Aoba, Chuo, Chiba 260‐8682, Japan</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">MICHAEL H.</namePart><namePart type="family">DOOSEY</namePart><affiliation>Tulane University Museum of Natural History, Wild Boar Road, Belle Chasse, LA 70037, USA</affiliation><description>Current address: University of Kansas, Natural History Museum and Biodiversity Research Center, 1345 Jayhawk Blvd., Lawrence, KS66045, USA</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">HENRY L.</namePart><namePart type="family">BART Jr</namePart><affiliation>Tulane University Museum of Natural History, Wild Boar Road, Belle Chasse, LA 70037, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">JUN G.</namePart><namePart type="family">INOUE</namePart><affiliation>Department of Biology, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK</affiliation><description>Current address: Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">MUTSUMI</namePart><namePart type="family">NISHIDA</namePart><affiliation>Atmosphere and Ocean Research Institute, University of Tokyo, 5‐1‐5 Kashiwanoha, Kashiwa 277‐8564, Japan</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">RICHARD L.</namePart><namePart type="family">MAYDEN</namePart><affiliation>Department of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO 63103, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">MASAKI</namePart><namePart type="family">MIYA</namePart><affiliation>Department of Zoology, Natural History Museum & Institute, Chiba, 955‐2 Aoba, Chuo, Chiba 260‐8682, Japan</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="article" displayLabel="article"></genre><originInfo><publisher>Blackwell Publishing Ltd</publisher><place><placeTerm type="text">Oxford, UK</placeTerm></place><dateIssued encoding="w3cdtf">2011-03</dateIssued><edition>Received 4 August 2009; revised 21 December 2009; accepted for publication 3 January 2010</edition><copyrightDate encoding="w3cdtf">2011</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType><extent unit="figures">5</extent><extent unit="tables">11</extent><extent unit="references">162</extent><extent unit="words">16697</extent></physicalDescription><abstract>We analysed mitochondrial genomic sequences under maximum likelihood (ML) criteria to explore phylogenetic relationships, and performed historical biogeography analysis with divergence time estimation for fishes of Order Cypriniformes (Actinopterygii: Ostariophysi). We added mitogenomes for eight new cypriniforms and one outgroup to a data set comprising 53 and six outgroup mitogenomes from a previous study to make our taxon sampling geographically representative. The ML tree reconfirmed monophyly of four basal cypriniform clades (cyprinids, catostomids, gyrinocheilids, and loaches including balitorids and cobitids). It also recovered 18 monophyletic groups largely equivalent to the subfamilial rank, and resolved interrelationships among most of these subfamilial clades. However, lower bootstrap support for the ML tree and higher approximately unbiased (au) probabilities for alternative topologies around some branches indicated problems that still need to be resolved. Historical taxon biogeography by dispersal‐vicariance analysis, a parsimonious reconstruction of past ranges, and gain‐loss ratio analysis at the subfamilial level, identified the geographical region of basal cypriniform divergence as southern Asia. Bayesian divergence time analysis dated the basal otophysan split, which gave birth to Order Cypriniformes, to the late Triassic around 219.5 Mya. The basal cypriniform divergence took place during the late Jurassic around 155.9 Mya. These dates coincide with the onset and completion, respectively, of the Pangaean breakup. Taking biogeographical analysis and node dating into account, we consider the most likely candidate for the initial geographical range of Order Cypriniformes to be the south‐eastern area of Mesozoic Laurasia (present‐day southern Asia, excluding the Indian subcontinent). We also briefly discuss ecological implications of the group's divergence.</abstract><abstract>© 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 161, 633–662.</abstract><subject lang="en"><genre>keywords</genre><topic>Balitoridae</topic><topic>Catostomidae</topic><topic>Cobitidae</topic><topic>Cyprinidae</topic><topic>divergence time</topic><topic>likelihood comparison</topic><topic>maximum likelihood phylogeny</topic><topic>zoogeography</topic></subject><relatedItem type="host"><titleInfo><title>Zoological Journal of the Linnean Society</title></titleInfo><genre type="journal">journal</genre><note type="content"> Figure S1. The Bayesian consensus tree topology (3 000 000 iteration with 25 500 burnin period) on 14 594 nucleotide sites of 60 Cypriniformes and six outgroups (Δ/nL with the ML tree = 21.0). Numbers at each branch indicate posterior probabilities. Asterisks indicate 100% posterior support. Figure S2. Taxon biogeography on second best trees. Figures above internal branches show geographical patterns inferred by dispersal‐vicariance analysis (DIVA), whereas those on the branches indicate patterns by simple parsimonious reconstruction. Figure S3. Estimated node dates (Myr) among 37 ingroups and 39 outgroups excluding the bottom (Musterus) along the maximum likelihood tree with outgroups whose relationships are according to recent literature (Inoue et al., 2003, 2005; Hurley et al., 2007; Lavoue et al., 2005, 2007, 2008). Table S1. Comparison of estimated ancestral areas for Cypriniformes (following Bremer, 1992) between the maximum likelihood and second best trees. Table S2. Comparison of estimated divergence times (Mya) and confidence ranges (95%) of their posterior distributions at each node between the maximum likelihood and second best trees. Figure S1. The Bayesian consensus tree topology (3 000 000 iteration with 25 500 burnin period) on 14 594 nucleotide sites of 60 Cypriniformes and six outgroups (Δ/nL with the ML tree = 21.0). Numbers at each branch indicate posterior probabilities. Asterisks indicate 100% posterior support. Figure S2. Taxon biogeography on second best trees. Figures above internal branches show geographical patterns inferred by dispersal‐vicariance analysis (DIVA), whereas those on the branches indicate patterns by simple parsimonious reconstruction. Figure S3. Estimated node dates (Myr) among 37 ingroups and 39 outgroups excluding the bottom (Musterus) along the maximum likelihood tree with outgroups whose relationships are according to recent literature (Inoue et al., 2003, 2005; Hurley et al., 2007; Lavoue et al., 2005, 2007, 2008). Table S1. Comparison of estimated ancestral areas for Cypriniformes (following Bremer, 1992) between the maximum likelihood and second best trees. Table S2. Comparison of estimated divergence times (Mya) and confidence ranges (95%) of their posterior distributions at each node between the maximum likelihood and second best trees. Figure S1. The Bayesian consensus tree topology (3 000 000 iteration with 25 500 burnin period) on 14 594 nucleotide sites of 60 Cypriniformes and six outgroups (Δ/nL with the ML tree = 21.0). Numbers at each branch indicate posterior probabilities. Asterisks indicate 100% posterior support. Figure S2. Taxon biogeography on second best trees. Figures above internal branches show geographical patterns inferred by dispersal‐vicariance analysis (DIVA), whereas those on the branches indicate patterns by simple parsimonious reconstruction. Figure S3. Estimated node dates (Myr) among 37 ingroups and 39 outgroups excluding the bottom (Musterus) along the maximum likelihood tree with outgroups whose relationships are according to recent literature (Inoue et al., 2003, 2005; Hurley et al., 2007; Lavoue et al., 2005, 2007, 2008). Table S1. Comparison of estimated ancestral areas for Cypriniformes (following Bremer, 1992) between the maximum likelihood and second best trees. Table S2. Comparison of estimated divergence times (Mya) and confidence ranges (95%) of their posterior distributions at each node between the maximum likelihood and second best trees. Figure S1. The Bayesian consensus tree topology (3 000 000 iteration with 25 500 burnin period) on 14 594 nucleotide sites of 60 Cypriniformes and six outgroups (Δ/nL with the ML tree = 21.0). Numbers at each branch indicate posterior probabilities. Asterisks indicate 100% posterior support. Figure S2. Taxon biogeography on second best trees. Figures above internal branches show geographical patterns inferred by dispersal‐vicariance analysis (DIVA), whereas those on the branches indicate patterns by simple parsimonious reconstruction. Figure S3. Estimated node dates (Myr) among 37 ingroups and 39 outgroups excluding the bottom (Musterus) along the maximum likelihood tree with outgroups whose relationships are according to recent literature (Inoue et al., 2003, 2005; Hurley et al., 2007; Lavoue et al., 2005, 2007, 2008). Table S1. Comparison of estimated ancestral areas for Cypriniformes (following Bremer, 1992) between the maximum likelihood and second best trees. Table S2. Comparison of estimated divergence times (Mya) and confidence ranges (95%) of their posterior distributions at each node between the maximum likelihood and second best trees. Figure S1. The Bayesian consensus tree topology (3 000 000 iteration with 25 500 burnin period) on 14 594 nucleotide sites of 60 Cypriniformes and six outgroups (Δ/nL with the ML tree = 21.0). Numbers at each branch indicate posterior probabilities. Asterisks indicate 100% posterior support. Figure S2. Taxon biogeography on second best trees. Figures above internal branches show geographical patterns inferred by dispersal‐vicariance analysis (DIVA), whereas those on the branches indicate patterns by simple parsimonious reconstruction. Figure S3. Estimated node dates (Myr) among 37 ingroups and 39 outgroups excluding the bottom (Musterus) along the maximum likelihood tree with outgroups whose relationships are according to recent literature (Inoue et al., 2003, 2005; Hurley et al., 2007; Lavoue et al., 2005, 2007, 2008). Table S1. Comparison of estimated ancestral areas for Cypriniformes (following Bremer, 1992) between the maximum likelihood and second best trees. Table S2. Comparison of estimated divergence times (Mya) and confidence ranges (95%) of their posterior distributions at each node between the maximum likelihood and second best trees.Supporting Info Item: Supporting info item - </note><identifier type="ISSN">0024-4082</identifier><identifier type="eISSN">1096-3642</identifier><identifier type="DOI">10.1111/(ISSN)1096-3642</identifier><identifier type="PublisherID">ZOJ</identifier><part><date>2011</date><detail type="volume"><caption>vol.</caption><number>161</number></detail><detail type="issue"><caption>no.</caption><number>3</number></detail><extent unit="pages"><start>633</start><end>662</end><total>30</total></extent></part></relatedItem><identifier type="istex">AC202FB3A9F669C764CCB44DEA96AF3C4FBDB12C</identifier><identifier type="DOI">10.1111/j.1096-3642.2010.00651.x</identifier><identifier type="ArticleID">ZOJ651</identifier><accessCondition type="use and reproduction" contentType="copyright">© 2011 The Linnean Society of London</accessCondition><recordInfo><recordContentSource>WILEY</recordContentSource><recordOrigin>Blackwell Publishing Ltd</recordOrigin></recordInfo></mods></metadata><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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