Differentiation of sturgeon species by PCR-RFLP
Identifieur interne : 000332 ( Istex/Corpus ); précédent : 000331; suivant : 000333Differentiation of sturgeon species by PCR-RFLP
Auteurs : Christian Wolf ; Philipp Hübner ; Jürg LüthySource :
- Food Research International [ 0963-9969 ] ; 2000.
Abstract
A method for identification of sturgeon species in caviar has been developed based on the amplification of a region of the mitochondrial genome (tRNAGlu/cytochrome b) using the polymerase chain reaction (PCR). To distinguish between several types of sturgeon caviar the obtained 462bp long PCR-products were cut with different restriction endonucleases (RE) resulting in species-specific restriction fragment length polymorphisms (RFLP). The method is suitable to differentiate between 10 species of Acipenser and Huso originating from Europe and Asia.
Url:
DOI: 10.1016/S0963-9969(99)00150-7
Links to Exploration step
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<front><div type="abstract" xml:lang="en">A method for identification of sturgeon species in caviar has been developed based on the amplification of a region of the mitochondrial genome (tRNAGlu/cytochrome b) using the polymerase chain reaction (PCR). To distinguish between several types of sturgeon caviar the obtained 462bp long PCR-products were cut with different restriction endonucleases (RE) resulting in species-specific restriction fragment length polymorphisms (RFLP). The method is suitable to differentiate between 10 species of Acipenser and Huso originating from Europe and Asia.</div>
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<notesStmt><note type="content">Fig. 1: Alignment of the 462 bp PCR-amplicons of 10 investigated sturgeon species. Priming sites are underlined.</note>
<note type="content">Fig. 2: Alignment of a 124 bp (corresponding to position 439-562 on the cytochrome b gene) part of the cyt b gene of four A. gueldenstaedti, three A. persicus and two EMBL database entries (AF006136: A, gueldenstaedti, AF0061155: A. persicus) following the 462 bp fragment.</note>
<note type="content">Fig. 3: RFLP analysis of the 462 bp PCR amplicon of 10 sturgeon species with the four restriction enzymes necessary for identification: 1, Huso huso; 2, A. gueldenstaedti; 3, A. stellatus; 4, A. schrencki; 5, A. naccari; 6, A. nudiventris; 7, A. persicus; 8, A. ruthenus; 9, A. baerii; 10, A. sturio.</note>
<note type="content">Fig. 4: RFLP pattern of caviar samples K1 — K23 after digestion with NlaIII (A), Rsa (B), SspI (C), and Tru9I (D). Results of restriction analysis are shown in Table 2.</note>
<note type="content">Table 1: Restriction fragment length polymorphism (RFLP) of the cyt b gene of 10 sturgeon speciesa</note>
<note type="content">Table 2: Results of the classification of restriction pattern of 15 commercial caviar samples with the restriction enzymes NlaIII, RsaI, SspI and Tru91a</note>
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<abstract xml:lang="en"><p>A method for identification of sturgeon species in caviar has been developed based on the amplification of a region of the mitochondrial genome (tRNAGlu/cytochrome b) using the polymerase chain reaction (PCR). To distinguish between several types of sturgeon caviar the obtained 462bp long PCR-products were cut with different restriction endonucleases (RE) resulting in species-specific restriction fragment length polymorphisms (RFLP). The method is suitable to differentiate between 10 species of Acipenser and Huso originating from Europe and Asia.</p>
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<textClass><keywords scheme="keyword"><list><head>Keywords</head>
<item><term>Species identification</term>
</item>
<item><term>Sturgeon</term>
</item>
<item><term>Acipenser</term>
</item>
<item><term>Caviar</term>
</item>
<item><term>PCR</term>
</item>
<item><term>RFLP</term>
</item>
<item><term>cyt b</term>
</item>
</list>
</keywords>
</textClass>
<textClass><keywords scheme="keyword"><list><head>Abbreviations</head>
<item><term>PCR</term>
<term>polymerase chain reaction</term>
</item>
<item><term>RFLP</term>
<term>restriction fragment length polymorphism</term>
</item>
<item><term>cyt b</term>
<term>cytochrome b</term>
</item>
<item><term>RE</term>
<term>restriction endonuclease</term>
</item>
<item><term>SSCP</term>
<term>single strand conformation polymorphism</term>
</item>
<item><term>IEF</term>
<term>isoelectric focusing</term>
</item>
<item><term>SDS–PAGE</term>
<term>sodium dodecyl sulfate–polyacrylamide gel electrophoresis</term>
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<head><ce:title>Differentiation of sturgeon species by PCR-RFLP</ce:title>
<ce:author-group><ce:author><ce:initials>C.</ce:initials>
<ce:given-name>Christian</ce:given-name>
<ce:surname>Wolf</ce:surname>
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<ce:affiliation><ce:textfn>Laboratory of Food Chemistry, Department of Chemistry and Biochemistry, University of Berne, Freiestrasse 3, 3012 Berne, Switzerland</ce:textfn>
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<ce:text>Corresponding author. Tel.: +41-31-631-4340; fax: +41-31-631-4887</ce:text>
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<ce:abstract><ce:section-title>Abstract</ce:section-title>
<ce:abstract-sec><ce:simple-para>A method for identification of sturgeon species in caviar has been developed based on the amplification of a region of the mitochondrial genome (tRNA<ce:sup>Glu</ce:sup>
/cytochrome <ce:italic>b</ce:italic>
) using the polymerase chain reaction (PCR). To distinguish between several types of sturgeon caviar the obtained 462bp long PCR-products were cut with different restriction endonucleases (RE) resulting in species-specific restriction fragment length polymorphisms (RFLP). The method is suitable to differentiate between 10 species of <ce:italic>Acipenser</ce:italic>
and <ce:italic>Huso</ce:italic>
originating from Europe and Asia.</ce:simple-para>
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<ce:keywords class="keyword"><ce:section-title>Keywords</ce:section-title>
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<ce:keyword><ce:text>Sturgeon</ce:text>
</ce:keyword>
<ce:keyword><ce:text><ce:italic>Acipenser</ce:italic>
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</ce:keyword>
<ce:keyword><ce:text>Caviar</ce:text>
</ce:keyword>
<ce:keyword><ce:text>PCR</ce:text>
</ce:keyword>
<ce:keyword><ce:text>RFLP</ce:text>
</ce:keyword>
<ce:keyword><ce:text>cyt <ce:italic>b</ce:italic>
</ce:text>
</ce:keyword>
</ce:keywords>
<ce:keywords class="abr"><ce:section-title>Abbreviations</ce:section-title>
<ce:keyword><ce:text>PCR</ce:text>
<ce:keyword><ce:text>polymerase chain reaction</ce:text>
</ce:keyword>
</ce:keyword>
<ce:keyword><ce:text>RFLP</ce:text>
<ce:keyword><ce:text>restriction fragment length polymorphism</ce:text>
</ce:keyword>
</ce:keyword>
<ce:keyword><ce:text>cyt <ce:italic>b</ce:italic>
</ce:text>
<ce:keyword><ce:text>cytochrome <ce:italic>b</ce:italic>
</ce:text>
</ce:keyword>
</ce:keyword>
<ce:keyword><ce:text>RE</ce:text>
<ce:keyword><ce:text>restriction endonuclease</ce:text>
</ce:keyword>
</ce:keyword>
<ce:keyword><ce:text>SSCP</ce:text>
<ce:keyword><ce:text>single strand conformation polymorphism</ce:text>
</ce:keyword>
</ce:keyword>
<ce:keyword><ce:text>IEF</ce:text>
<ce:keyword><ce:text>isoelectric focusing</ce:text>
</ce:keyword>
</ce:keyword>
<ce:keyword><ce:text>SDS–PAGE</ce:text>
<ce:keyword><ce:text>sodium dodecyl sulfate–polyacrylamide gel electrophoresis</ce:text>
</ce:keyword>
</ce:keyword>
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<copyrightDate encoding="w3cdtf">2000</copyrightDate>
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<language><languageTerm type="code" authority="iso639-2b">eng</languageTerm>
<languageTerm type="code" authority="rfc3066">en</languageTerm>
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<abstract lang="en">A method for identification of sturgeon species in caviar has been developed based on the amplification of a region of the mitochondrial genome (tRNAGlu/cytochrome b) using the polymerase chain reaction (PCR). To distinguish between several types of sturgeon caviar the obtained 462bp long PCR-products were cut with different restriction endonucleases (RE) resulting in species-specific restriction fragment length polymorphisms (RFLP). The method is suitable to differentiate between 10 species of Acipenser and Huso originating from Europe and Asia.</abstract>
<note type="content">Fig. 1: Alignment of the 462 bp PCR-amplicons of 10 investigated sturgeon species. Priming sites are underlined.</note>
<note type="content">Fig. 2: Alignment of a 124 bp (corresponding to position 439-562 on the cytochrome b gene) part of the cyt b gene of four A. gueldenstaedti, three A. persicus and two EMBL database entries (AF006136: A, gueldenstaedti, AF0061155: A. persicus) following the 462 bp fragment.</note>
<note type="content">Fig. 3: RFLP analysis of the 462 bp PCR amplicon of 10 sturgeon species with the four restriction enzymes necessary for identification: 1, Huso huso; 2, A. gueldenstaedti; 3, A. stellatus; 4, A. schrencki; 5, A. naccari; 6, A. nudiventris; 7, A. persicus; 8, A. ruthenus; 9, A. baerii; 10, A. sturio.</note>
<note type="content">Fig. 4: RFLP pattern of caviar samples K1 — K23 after digestion with NlaIII (A), Rsa (B), SspI (C), and Tru9I (D). Results of restriction analysis are shown in Table 2.</note>
<note type="content">Table 1: Restriction fragment length polymorphism (RFLP) of the cyt b gene of 10 sturgeon speciesa</note>
<note type="content">Table 2: Results of the classification of restriction pattern of 15 commercial caviar samples with the restriction enzymes NlaIII, RsaI, SspI and Tru91a</note>
<subject><genre>Keywords</genre>
<topic>Species identification</topic>
<topic>Sturgeon</topic>
<topic>Acipenser</topic>
<topic>Caviar</topic>
<topic>PCR</topic>
<topic>RFLP</topic>
<topic>cyt b</topic>
</subject>
<subject><genre>Abbreviations</genre>
<topic>PCR : polymerase chain reaction</topic>
<topic>RFLP : restriction fragment length polymorphism</topic>
<topic>cyt b : cytochrome b</topic>
<topic>RE : restriction endonuclease</topic>
<topic>SSCP : single strand conformation polymorphism</topic>
<topic>IEF : isoelectric focusing</topic>
<topic>SDS–PAGE : sodium dodecyl sulfate–polyacrylamide gel electrophoresis</topic>
</subject>
<relatedItem type="host"><titleInfo><title>Food Research International</title>
</titleInfo>
<titleInfo type="abbreviated"><title>FRIN</title>
</titleInfo>
<genre type="journal">journal</genre>
<originInfo><dateIssued encoding="w3cdtf">199912</dateIssued>
</originInfo>
<identifier type="ISSN">0963-9969</identifier>
<identifier type="PII">S0963-9969(00)X0039-7</identifier>
<part><date>199912</date>
<detail type="volume"><number>32</number>
<caption>vol.</caption>
</detail>
<detail type="issue"><number>10</number>
<caption>no.</caption>
</detail>
<extent unit="issue pages"><start>659</start>
<end>722</end>
</extent>
<extent unit="pages"><start>699</start>
<end>705</end>
</extent>
</part>
</relatedItem>
<identifier type="istex">9035064769572DF94BBBAB7A2E67843AEC0D6F7B</identifier>
<identifier type="DOI">10.1016/S0963-9969(99)00150-7</identifier>
<identifier type="PII">S0963-9969(99)00150-7</identifier>
<accessCondition type="use and reproduction" contentType="copyright">©2000 Canadian Institute of Food Science and Technology</accessCondition>
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<recordOrigin>Canadian Institute of Food Science and Technology, ©2000</recordOrigin>
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