Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.
Identifieur interne : 000F42 ( Main/Exploration ); précédent : 000F41; suivant : 000F43Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.
Auteurs : Terrence H. Bell [Canada] ; Benoît Cloutier-Hurteau [Canada] ; Fahad Al-Otaibi [Canada, Arabie saoudite] ; Marie-Claude Turmel [Canada] ; Etienne Yergeau [Canada] ; François Courchesne [Canada] ; Marc St-Arnaud [Canada]Source :
- Environmental microbiology [ 1462-2920 ] ; 2015.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ADN fongique (génétique), ARN ribosomique 16S (génétique), Analyse de séquence d'ADN (MeSH), Ascomycota (classification), Ascomycota (génétique), Assainissement et restauration de l'environnement (méthodes), Bactéries (classification), Bactéries (génétique), Installations d'élimination des déchets (MeSH), Microbiologie du sol (MeSH), Microbiote (MeSH), Mycorhizes (croissance et développement), Oligoéléments (métabolisme), Polluants du sol (métabolisme), Racines de plante (microbiologie), Rhizosphère (MeSH), Salix (croissance et développement), Salix (métabolisme), Sol (composition chimique), Séquence nucléotidique (MeSH), Zinc (métabolisme).
- MESH :
- composition chimique : Ascomycota, Bactéries, Sol.
- croissance et développement : Mycorhizes, Salix.
- génétique : ADN bactérien, ADN fongique, ARN ribosomique 16S, Ascomycota, Bactéries.
- microbiologie : Racines de plante.
- métabolisme : Oligoéléments, Polluants du sol, Salix, Zinc.
- méthodes : Assainissement et restauration de l'environnement.
- Analyse de séquence d'ADN, Installations d'élimination des déchets, Microbiologie du sol, Microbiote, Rhizosphère, Séquence nucléotidique.
English descriptors
- KwdEn :
- Ascomycota (classification), Ascomycota (genetics), Bacteria (classification), Bacteria (genetics), Base Sequence (MeSH), DNA, Bacterial (genetics), DNA, Fungal (genetics), Environmental Restoration and Remediation (methods), Microbiota (MeSH), Mycorrhizae (growth & development), Plant Roots (microbiology), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Salix (growth & development), Salix (metabolism), Sequence Analysis, DNA (MeSH), Soil (chemistry), Soil Microbiology (MeSH), Soil Pollutants (metabolism), Trace Elements (metabolism), Waste Disposal Facilities (MeSH), Zinc (metabolism).
- MESH :
- chemical , chemistry : Soil.
- chemical , genetics : DNA, Bacterial, DNA, Fungal, RNA, Ribosomal, 16S.
- classification : Ascomycota, Bacteria.
- genetics : Ascomycota, Bacteria.
- growth & development : Mycorrhizae, Salix.
- metabolism : Salix, Soil Pollutants, Trace Elements, Zinc.
- methods : Environmental Restoration and Remediation.
- microbiology : Plant Roots.
- Base Sequence, Microbiota, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Waste Disposal Facilities.
Abstract
Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential.
DOI: 10.1111/1462-2920.12900
PubMed: 25970820
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author></analytic><series><title level="j">Environmental microbiology</title><idno type="eISSN">1462-2920</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (classification)</term><term>Ascomycota (genetics)</term><term>Bacteria (classification)</term><term>Bacteria (genetics)</term><term>Base Sequence (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Fungal (genetics)</term><term>Environmental Restoration and Remediation (methods)</term><term>Microbiota (MeSH)</term><term>Mycorrhizae (growth & development)</term><term>Plant Roots (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Rhizosphere (MeSH)</term><term>Salix (growth & development)</term><term>Salix (metabolism)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Soil (chemistry)</term><term>Soil Microbiology (MeSH)</term><term>Soil Pollutants (metabolism)</term><term>Trace Elements (metabolism)</term><term>Waste Disposal Facilities (MeSH)</term><term>Zinc (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ADN fongique (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Ascomycota (classification)</term><term>Ascomycota (génétique)</term><term>Assainissement et restauration de l'environnement (méthodes)</term><term>Bactéries (classification)</term><term>Bactéries (génétique)</term><term>Installations d'élimination des déchets (MeSH)</term><term>Microbiologie du sol (MeSH)</term><term>Microbiote (MeSH)</term><term>Mycorhizes (croissance et développement)</term><term>Oligoéléments (métabolisme)</term><term>Polluants du sol (métabolisme)</term><term>Racines de plante (microbiologie)</term><term>Rhizosphère (MeSH)</term><term>Salix (croissance et développement)</term><term>Salix (métabolisme)</term><term>Sol (composition chimique)</term><term>Séquence nucléotidique (MeSH)</term><term>Zinc (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Fungal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Ascomycota</term><term>Bacteria</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Ascomycota</term><term>Bactéries</term><term>Sol</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Mycorhizes</term><term>Salix</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Bacteria</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Mycorrhizae</term><term>Salix</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ADN fongique</term><term>ARN ribosomique 16S</term><term>Ascomycota</term><term>Bactéries</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Salix</term><term>Soil Pollutants</term><term>Trace Elements</term><term>Zinc</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Environmental Restoration and Remediation</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Oligoéléments</term><term>Polluants du sol</term><term>Salix</term><term>Zinc</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Assainissement et restauration de l'environnement</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Microbiota</term><term>Rhizosphere</term><term>Sequence Analysis, DNA</term><term>Soil Microbiology</term><term>Waste Disposal Facilities</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Installations d'élimination des déchets</term><term>Microbiologie du sol</term><term>Microbiote</term><term>Rhizosphère</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">25970820</PMID><DateCompleted><Year>2016</Year><Month>04</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1462-2920</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><Issue>8</Issue><PubDate><Year>2015</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Environmental microbiology</Title><ISOAbbreviation>Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.</ArticleTitle><Pagination><MedlinePgn>3025-38</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/1462-2920.12900</ELocationID><Abstract><AbstractText>Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential. </AbstractText><CopyrightInformation>© 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bell</LastName><ForeName>Terrence H</ForeName><Initials>TH</Initials><AffiliationInfo><Affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cloutier-Hurteau</LastName><ForeName>Benoît</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Al-Otaibi</LastName><ForeName>Fahad</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Soil Science, King Saud University, Riyadh, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Turmel</LastName><ForeName>Marie-Claude</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yergeau</LastName><ForeName>Etienne</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Energy, Mining and Environment, National Research Council Canada, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Courchesne</LastName><ForeName>François</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>St-Arnaud</LastName><ForeName>Marc</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>06</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Environ Microbiol</MedlineTA><NlmUniqueID>100883692</NlmUniqueID><ISSNLinking>1462-2912</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012989">Soil Pollutants</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014131">Trace Elements</NameOfSubstance></Chemical><Chemical><RegistryNumber>J41CSQ7QDS</RegistryNumber><NameOfSubstance UI="D015032">Zinc</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D052918" MajorTopicYN="N">Environmental Restoration and Remediation</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D064307" MajorTopicYN="Y">Microbiota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012989" MajorTopicYN="N">Soil Pollutants</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014131" MajorTopicYN="N">Trace Elements</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D064091" MajorTopicYN="Y">Waste Disposal Facilities</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015032" MajorTopicYN="N">Zinc</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>03</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2015</Year><Month>05</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>05</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>5</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>4</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25970820</ArticleId><ArticleId IdType="doi">10.1111/1462-2920.12900</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Arabie saoudite</li><li>Canada</li></country></list><tree><country name="Canada"><noRegion><name sortKey="Bell, Terrence H" sort="Bell, Terrence H" uniqKey="Bell T" first="Terrence H" last="Bell">Terrence H. Bell</name></noRegion><name sortKey="Al Otaibi, Fahad" sort="Al Otaibi, Fahad" uniqKey="Al Otaibi F" first="Fahad" last="Al-Otaibi">Fahad Al-Otaibi</name><name sortKey="Cloutier Hurteau, Benoit" sort="Cloutier Hurteau, Benoit" uniqKey="Cloutier Hurteau B" first="Benoît" last="Cloutier-Hurteau">Benoît Cloutier-Hurteau</name><name sortKey="Courchesne, Francois" sort="Courchesne, Francois" uniqKey="Courchesne F" first="François" last="Courchesne">François Courchesne</name><name sortKey="St Arnaud, Marc" sort="St Arnaud, Marc" uniqKey="St Arnaud M" first="Marc" last="St-Arnaud">Marc St-Arnaud</name><name sortKey="Turmel, Marie Claude" sort="Turmel, Marie Claude" uniqKey="Turmel M" first="Marie-Claude" last="Turmel">Marie-Claude Turmel</name><name sortKey="Yergeau, Etienne" sort="Yergeau, Etienne" uniqKey="Yergeau E" first="Etienne" last="Yergeau">Etienne Yergeau</name></country><country name="Arabie saoudite"><noRegion><name sortKey="Al Otaibi, Fahad" sort="Al Otaibi, Fahad" uniqKey="Al Otaibi F" first="Fahad" last="Al-Otaibi">Fahad Al-Otaibi</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WillowV1/Data/Main/Exploration
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{{Explor lien
|wiki= Bois
|area= WillowV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:25970820
|texte= Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:25970820" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
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