The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers.
Identifieur interne : 001F71 ( Main/Corpus ); précédent : 001F70; suivant : 001F72The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers.
Auteurs : Staffan Bensch ; Susanne Akesson ; Darren E. IrwinSource :
- Molecular ecology [ 0962-1083 ] ; 2002.
English descriptors
- KwdEn :
- MESH :
- chemical : Genetic Markers.
- geographic : Scandinavian and Nordic Countries.
- genetics : Songbirds.
- Animal Migration, Animals, Female, Genetic Variation, Male, Polymorphism, Restriction Fragment Length, Polymorphism, Single Nucleotide.
Abstract
We used the amplified fragment length polymorphism (AFLP) method to obtain genetic markers distinguishing two subspecies of willow warblers Phylloscopus trochilus that have different migratory behaviours but are not differentiated in mitochondrial DNA or at several microsatellite loci. With the inverse-polymerase chain reaction (PCR) approach we converted a dominant AFLP-marker to a codominant single nucleotide polymorphism (SNP). Across Scandinavia we typed 621 birds at the SNP locus AFLP-WW1 and we found a sigmoid change in allele frequencies centred around 62 degrees latitude. North of the latitudinal cline was a west-east cline. Both clines are narrower than one would expect from dispersal distances in willow warblers, which suggests that these are maintained by selection. The latitudinal cline at the locus AFLP-WW1 is paralleled by changes in several other traits, all of which might be maintained by a single selective force. The most plausible selection factor that we have identified is selection against hybrids because of inferior migratory behaviour. The selective force maintaining the east-west cline is less obvious. We discuss alternatives to the selection scenario, involving colonization history and asymmetric gene flow.
DOI: 10.1046/j.1365-294x.2002.01629.x
PubMed: 12406246
Links to Exploration step
pubmed:12406246Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers.</title><author><name sortKey="Bensch, Staffan" sort="Bensch, Staffan" uniqKey="Bensch S" first="Staffan" last="Bensch">Staffan Bensch</name><affiliation><nlm:affiliation>Molecular Population Biology Laboratory, Department of Animal Ecology, University of Lund, S-223 62 Lund, Sweden. staffan.bensch@zooekol.lu.se</nlm:affiliation></affiliation></author><author><name sortKey="Akesson, Susanne" sort="Akesson, Susanne" uniqKey="Akesson S" first="Susanne" last="Akesson">Susanne Akesson</name></author><author><name sortKey="Irwin, Darren E" sort="Irwin, Darren E" uniqKey="Irwin D" first="Darren E" last="Irwin">Darren E. Irwin</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2002">2002</date><idno type="RBID">pubmed:12406246</idno><idno type="pmid">12406246</idno><idno type="doi">10.1046/j.1365-294x.2002.01629.x</idno><idno type="wicri:Area/Main/Corpus">001F71</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001F71</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers.</title><author><name sortKey="Bensch, Staffan" sort="Bensch, Staffan" uniqKey="Bensch S" first="Staffan" last="Bensch">Staffan Bensch</name><affiliation><nlm:affiliation>Molecular Population Biology Laboratory, Department of Animal Ecology, University of Lund, S-223 62 Lund, Sweden. staffan.bensch@zooekol.lu.se</nlm:affiliation></affiliation></author><author><name sortKey="Akesson, Susanne" sort="Akesson, Susanne" uniqKey="Akesson S" first="Susanne" last="Akesson">Susanne Akesson</name></author><author><name sortKey="Irwin, Darren E" sort="Irwin, Darren E" uniqKey="Irwin D" first="Darren E" last="Irwin">Darren E. Irwin</name></author></analytic><series><title level="j">Molecular ecology</title><idno type="ISSN">0962-1083</idno><imprint><date when="2002" type="published">2002</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animal Migration (MeSH)</term><term>Animals (MeSH)</term><term>Female (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Male (MeSH)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Scandinavian and Nordic Countries (MeSH)</term><term>Songbirds (genetics)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Scandinavian and Nordic Countries</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Songbirds</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animal Migration</term><term>Animals</term><term>Female</term><term>Genetic Variation</term><term>Male</term><term>Polymorphism, Restriction Fragment Length</term><term>Polymorphism, Single Nucleotide</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We used the amplified fragment length polymorphism (AFLP) method to obtain genetic markers distinguishing two subspecies of willow warblers Phylloscopus trochilus that have different migratory behaviours but are not differentiated in mitochondrial DNA or at several microsatellite loci. With the inverse-polymerase chain reaction (PCR) approach we converted a dominant AFLP-marker to a codominant single nucleotide polymorphism (SNP). Across Scandinavia we typed 621 birds at the SNP locus AFLP-WW1 and we found a sigmoid change in allele frequencies centred around 62 degrees latitude. North of the latitudinal cline was a west-east cline. Both clines are narrower than one would expect from dispersal distances in willow warblers, which suggests that these are maintained by selection. The latitudinal cline at the locus AFLP-WW1 is paralleled by changes in several other traits, all of which might be maintained by a single selective force. The most plausible selection factor that we have identified is selection against hybrids because of inferior migratory behaviour. The selective force maintaining the east-west cline is less obvious. We discuss alternatives to the selection scenario, involving colonization history and asymmetric gene flow.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">12406246</PMID><DateCompleted><Year>2003</Year><Month>05</Month><Day>02</Day></DateCompleted><DateRevised><Year>2019</Year><Month>09</Month><Day>16</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0962-1083</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><Issue>11</Issue><PubDate><Year>2002</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Molecular ecology</Title><ISOAbbreviation>Mol Ecol</ISOAbbreviation></Journal><ArticleTitle>The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers.</ArticleTitle><Pagination><MedlinePgn>2359-66</MedlinePgn></Pagination><Abstract><AbstractText>We used the amplified fragment length polymorphism (AFLP) method to obtain genetic markers distinguishing two subspecies of willow warblers Phylloscopus trochilus that have different migratory behaviours but are not differentiated in mitochondrial DNA or at several microsatellite loci. With the inverse-polymerase chain reaction (PCR) approach we converted a dominant AFLP-marker to a codominant single nucleotide polymorphism (SNP). Across Scandinavia we typed 621 birds at the SNP locus AFLP-WW1 and we found a sigmoid change in allele frequencies centred around 62 degrees latitude. North of the latitudinal cline was a west-east cline. Both clines are narrower than one would expect from dispersal distances in willow warblers, which suggests that these are maintained by selection. The latitudinal cline at the locus AFLP-WW1 is paralleled by changes in several other traits, all of which might be maintained by a single selective force. The most plausible selection factor that we have identified is selection against hybrids because of inferior migratory behaviour. The selective force maintaining the east-west cline is less obvious. We discuss alternatives to the selection scenario, involving colonization history and asymmetric gene flow.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bensch</LastName><ForeName>Staffan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Molecular Population Biology Laboratory, Department of Animal Ecology, University of Lund, S-223 62 Lund, Sweden. staffan.bensch@zooekol.lu.se</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Akesson</LastName><ForeName>Susanne</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Irwin</LastName><ForeName>Darren E</ForeName><Initials>DE</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Ecol</MedlineTA><NlmUniqueID>9214478</NlmUniqueID><ISSNLinking>0962-1083</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D025041" MajorTopicYN="N">Animal Migration</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012150" MajorTopicYN="Y">Polymorphism, Restriction Fragment Length</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="Y">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012537" MajorTopicYN="N" Type="Geographic">Scandinavian and Nordic Countries</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020308" MajorTopicYN="N">Songbirds</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2002</Year><Month>10</Month><Day>31</Day><Hour>4</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2003</Year><Month>5</Month><Day>3</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2002</Year><Month>10</Month><Day>31</Day><Hour>4</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">12406246</ArticleId><ArticleId IdType="pii">1629</ArticleId><ArticleId IdType="doi">10.1046/j.1365-294x.2002.01629.x</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WillowV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001F71 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001F71 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= WillowV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:12406246
|texte= The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:12406246" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a WillowV1
| This area was generated with Dilib version V0.6.37. |  |