Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.
Identifieur interne : 001854 ( Main/Corpus ); précédent : 001853; suivant : 001855Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.
Auteurs : Safiyh Taghavi ; Craig Garafola ; Sébastien Monchy ; Lee Newman ; Adam Hoffman ; Nele Weyens ; Tanja Barac ; Jaco Vangronsveld ; Daniel Van Der LelieSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2009.
English descriptors
- KwdEn :
- Bacteria (classification), Bacteria (isolation & purification), Bacterial Physiological Phenomena (MeSH), Biomass (MeSH), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Genes, rRNA (MeSH), Genome, Bacterial (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Populus (growth & development), Populus (microbiology), Populus (physiology), RNA, Bacterial (genetics), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology, Nucleic Acid (MeSH), Symbiosis (MeSH).
- MESH :
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal.
- classification : Bacteria.
- chemical , genetics : DNA, Bacterial, DNA, Ribosomal, RNA, Bacterial, RNA, Ribosomal, 16S.
- growth & development : Populus.
- isolation & purification : Bacteria.
- microbiology : Populus.
- physiology : Populus.
- Bacterial Physiological Phenomena, Biomass, Genes, rRNA, Genome, Bacterial, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Symbiosis.
Abstract
The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.
DOI: 10.1128/AEM.02239-08
PubMed: 19060168
PubMed Central: PMC2632133
Links to Exploration step
pubmed:19060168Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.</title><author><name sortKey="Taghavi, Safiyh" sort="Taghavi, Safiyh" uniqKey="Taghavi S" first="Safiyh" last="Taghavi">Safiyh Taghavi</name><affiliation><nlm:affiliation>Brookhaven National Laboratory, Biology Department, Upton, NY 11973-5000, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Garafola, Craig" sort="Garafola, Craig" uniqKey="Garafola C" first="Craig" last="Garafola">Craig Garafola</name></author><author><name sortKey="Monchy, Sebastien" sort="Monchy, Sebastien" uniqKey="Monchy S" first="Sébastien" last="Monchy">Sébastien Monchy</name></author><author><name sortKey="Newman, Lee" sort="Newman, Lee" uniqKey="Newman L" first="Lee" last="Newman">Lee Newman</name></author><author><name sortKey="Hoffman, Adam" sort="Hoffman, Adam" uniqKey="Hoffman A" first="Adam" last="Hoffman">Adam Hoffman</name></author><author><name sortKey="Weyens, Nele" sort="Weyens, Nele" uniqKey="Weyens N" first="Nele" last="Weyens">Nele Weyens</name></author><author><name sortKey="Barac, Tanja" sort="Barac, Tanja" uniqKey="Barac T" first="Tanja" last="Barac">Tanja Barac</name></author><author><name sortKey="Vangronsveld, Jaco" sort="Vangronsveld, Jaco" uniqKey="Vangronsveld J" first="Jaco" last="Vangronsveld">Jaco Vangronsveld</name></author><author><name sortKey="Van Der Lelie, Daniel" sort="Van Der Lelie, Daniel" uniqKey="Van Der Lelie D" first="Daniel" last="Van Der Lelie">Daniel Van Der Lelie</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19060168</idno><idno type="pmid">19060168</idno><idno type="doi">10.1128/AEM.02239-08</idno><idno type="pmc">PMC2632133</idno><idno type="wicri:Area/Main/Corpus">001854</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001854</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.</title><author><name sortKey="Taghavi, Safiyh" sort="Taghavi, Safiyh" uniqKey="Taghavi S" first="Safiyh" last="Taghavi">Safiyh Taghavi</name><affiliation><nlm:affiliation>Brookhaven National Laboratory, Biology Department, Upton, NY 11973-5000, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Garafola, Craig" sort="Garafola, Craig" uniqKey="Garafola C" first="Craig" last="Garafola">Craig Garafola</name></author><author><name sortKey="Monchy, Sebastien" sort="Monchy, Sebastien" uniqKey="Monchy S" first="Sébastien" last="Monchy">Sébastien Monchy</name></author><author><name sortKey="Newman, Lee" sort="Newman, Lee" uniqKey="Newman L" first="Lee" last="Newman">Lee Newman</name></author><author><name sortKey="Hoffman, Adam" sort="Hoffman, Adam" uniqKey="Hoffman A" first="Adam" last="Hoffman">Adam Hoffman</name></author><author><name sortKey="Weyens, Nele" sort="Weyens, Nele" uniqKey="Weyens N" first="Nele" last="Weyens">Nele Weyens</name></author><author><name sortKey="Barac, Tanja" sort="Barac, Tanja" uniqKey="Barac T" first="Tanja" last="Barac">Tanja Barac</name></author><author><name sortKey="Vangronsveld, Jaco" sort="Vangronsveld, Jaco" uniqKey="Vangronsveld J" first="Jaco" last="Vangronsveld">Jaco Vangronsveld</name></author><author><name sortKey="Van Der Lelie, Daniel" sort="Van Der Lelie, Daniel" uniqKey="Van Der Lelie D" first="Daniel" last="Van Der Lelie">Daniel Van Der Lelie</name></author></analytic><series><title level="j">Applied and environmental microbiology</title><idno type="eISSN">1098-5336</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria (classification)</term><term>Bacteria (isolation & purification)</term><term>Bacterial Physiological Phenomena (MeSH)</term><term>Biomass (MeSH)</term><term>DNA, Bacterial (chemistry)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Ribosomal (chemistry)</term><term>DNA, Ribosomal (genetics)</term><term>Genes, rRNA (MeSH)</term><term>Genome, Bacterial (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>Populus (growth & development)</term><term>Populus (microbiology)</term><term>Populus (physiology)</term><term>RNA, Bacterial (genetics)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sequence Homology, Nucleic Acid (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term><term>RNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Physiological Phenomena</term><term>Biomass</term><term>Genes, rRNA</term><term>Genome, Bacterial</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Sequence Homology, Nucleic Acid</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19060168</PMID><DateCompleted><Year>2009</Year><Month>02</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>75</Volume><Issue>3</Issue><PubDate><Year>2009</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.</ArticleTitle><Pagination><MedlinePgn>748-57</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.02239-08</ELocationID><Abstract><AbstractText>The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Taghavi</LastName><ForeName>Safiyh</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Brookhaven National Laboratory, Biology Department, Upton, NY 11973-5000, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Garafola</LastName><ForeName>Craig</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Monchy</LastName><ForeName>Sébastien</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Newman</LastName><ForeName>Lee</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Hoffman</LastName><ForeName>Adam</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Weyens</LastName><ForeName>Nele</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Barac</LastName><ForeName>Tanja</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Vangronsveld</LastName><ForeName>Jaco</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>van der Lelie</LastName><ForeName>Daniel</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>EU340901</AccessionNumber><AccessionNumber>EU340902</AccessionNumber><AccessionNumber>EU340903</AccessionNumber><AccessionNumber>EU340904</AccessionNumber><AccessionNumber>EU340905</AccessionNumber><AccessionNumber>EU340906</AccessionNumber><AccessionNumber>EU340907</AccessionNumber><AccessionNumber>EU340908</AccessionNumber><AccessionNumber>EU340909</AccessionNumber><AccessionNumber>EU340910</AccessionNumber><AccessionNumber>EU340911</AccessionNumber><AccessionNumber>EU340912</AccessionNumber><AccessionNumber>EU340913</AccessionNumber><AccessionNumber>EU340914</AccessionNumber><AccessionNumber>EU340915</AccessionNumber><AccessionNumber>EU340916</AccessionNumber><AccessionNumber>EU340917</AccessionNumber><AccessionNumber>EU340918</AccessionNumber><AccessionNumber>EU340919</AccessionNumber><AccessionNumber>EU340920</AccessionNumber><AccessionNumber>EU340921</AccessionNumber><AccessionNumber>EU340922</AccessionNumber><AccessionNumber>EU340923</AccessionNumber><AccessionNumber>EU340924</AccessionNumber><AccessionNumber>EU340925</AccessionNumber><AccessionNumber>EU340926</AccessionNumber><AccessionNumber>EU340927</AccessionNumber><AccessionNumber>EU340928</AccessionNumber><AccessionNumber>EU340929</AccessionNumber><AccessionNumber>EU340930</AccessionNumber><AccessionNumber>EU340931</AccessionNumber><AccessionNumber>EU340932</AccessionNumber><AccessionNumber>EU340933</AccessionNumber><AccessionNumber>EU340934</AccessionNumber><AccessionNumber>EU340935</AccessionNumber><AccessionNumber>EU340936</AccessionNumber><AccessionNumber>EU340937</AccessionNumber><AccessionNumber>EU340938</AccessionNumber><AccessionNumber>EU340939</AccessionNumber><AccessionNumber>EU340940</AccessionNumber><AccessionNumber>EU340941</AccessionNumber><AccessionNumber>EU340942</AccessionNumber><AccessionNumber>EU340943</AccessionNumber><AccessionNumber>EU340944</AccessionNumber><AccessionNumber>EU340945</AccessionNumber><AccessionNumber>EU340946</AccessionNumber><AccessionNumber>EU340947</AccessionNumber><AccessionNumber>EU340948</AccessionNumber><AccessionNumber>EU340949</AccessionNumber><AccessionNumber>EU340950</AccessionNumber><AccessionNumber>EU340951</AccessionNumber><AccessionNumber>EU340952</AccessionNumber><AccessionNumber>EU340953</AccessionNumber><AccessionNumber>EU340954</AccessionNumber><AccessionNumber>EU340955</AccessionNumber><AccessionNumber>EU340956</AccessionNumber><AccessionNumber>EU340957</AccessionNumber><AccessionNumber>EU340958</AccessionNumber><AccessionNumber>EU340959</AccessionNumber><AccessionNumber>EU340960</AccessionNumber><AccessionNumber>EU340961</AccessionNumber><AccessionNumber>EU340962</AccessionNumber><AccessionNumber>EU340963</AccessionNumber><AccessionNumber>EU340964</AccessionNumber><AccessionNumber>EU340965</AccessionNumber><AccessionNumber>EU340966</AccessionNumber><AccessionNumber>EU340967</AccessionNumber><AccessionNumber>EU340968</AccessionNumber><AccessionNumber>EU340969</AccessionNumber><AccessionNumber>EU340970</AccessionNumber><AccessionNumber>EU340971</AccessionNumber><AccessionNumber>EU340972</AccessionNumber><AccessionNumber>EU340973</AccessionNumber><AccessionNumber>EU340974</AccessionNumber><AccessionNumber>EU340975</AccessionNumber><AccessionNumber>EU340976</AccessionNumber><AccessionNumber>EU340977</AccessionNumber><AccessionNumber>EU340978</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2008</Year><Month>12</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Appl Environ Microbiol</MedlineTA><NlmUniqueID>7605801</NlmUniqueID><ISSNLinking>0099-2240</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012329">RNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018407" MajorTopicYN="Y">Bacterial Physiological Phenomena</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018533" MajorTopicYN="N">Biomass</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020459" MajorTopicYN="N">Genes, rRNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016680" MajorTopicYN="N">Genome, Bacterial</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012329" MajorTopicYN="N">RNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="Y">Symbiosis</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>12</Month><Day>9</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2009</Year><Month>2</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>12</Month><Day>9</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19060168</ArticleId><ArticleId IdType="pii">AEM.02239-08</ArticleId><ArticleId IdType="doi">10.1128/AEM.02239-08</ArticleId><ArticleId IdType="pmc">PMC2632133</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1191-6</Citation><ArticleIdList><ArticleId IdType="pubmed">15280290</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 1995 Apr;61(4):1352-6</Citation><ArticleIdList><ArticleId IdType="pubmed">7538275</ArticleId></ArticleIdList></Reference><Reference><Citation>Biotechnol Genet Eng Rev. 2006;23:175-207</Citation><ArticleIdList><ArticleId IdType="pubmed">22530508</ArticleId></ArticleIdList></Reference><Reference><Citation>Can J Microbiol. 2000 Oct;46(10):898-907</Citation><ArticleIdList><ArticleId IdType="pubmed">11068676</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiol Mol Biol Rev. 2005 Dec;69(4):608-34</Citation><ArticleIdList><ArticleId IdType="pubmed">16339738</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2006 Jan 1;34(Database issue):D344-8</Citation><ArticleIdList><ArticleId IdType="pubmed">16381883</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2001 Feb;67(2):1015-9</Citation><ArticleIdList><ArticleId IdType="pubmed">11157282</ArticleId></ArticleIdList></Reference><Reference><Citation>J Antimicrob Chemother. 2001 Jul;48(1):152-4</Citation><ArticleIdList><ArticleId IdType="pubmed">11418532</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2004 Jun;9(6):263-6</Citation><ArticleIdList><ArticleId IdType="pubmed">15165555</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 1958 Dec 13;182(4650):1670-1</Citation><ArticleIdList><ArticleId IdType="pubmed">13622611</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 1992 Dec;58(12):3977-83</Citation><ArticleIdList><ArticleId IdType="pubmed">1282314</ArticleId></ArticleIdList></Reference><Reference><Citation>Mutat Res. 1972 May;15(1):1-10</Citation><ArticleIdList><ArticleId IdType="pubmed">4623569</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2004 Dec;6(12):1244-51</Citation><ArticleIdList><ArticleId IdType="pubmed">15560822</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 1995 Feb;61(2):793-6</Citation><ArticleIdList><ArticleId IdType="pubmed">16534942</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiol Rev. 1995 Mar;59(1):143-69</Citation><ArticleIdList><ArticleId IdType="pubmed">7535888</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2007 Sep;25(9):1007-14</Citation><ArticleIdList><ArticleId IdType="pubmed">17704766</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2007 Aug;73(16):5261-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17586664</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2004 May;22(5):583-8</Citation><ArticleIdList><ArticleId IdType="pubmed">15077119</ArticleId></ArticleIdList></Reference><Reference><Citation>Adv Appl Microbiol. 2004;56:291-312</Citation><ArticleIdList><ArticleId IdType="pubmed">15566983</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4927-32</Citation><ArticleIdList><ArticleId IdType="pubmed">12684534</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2004 Jan;70(1):508-17</Citation><ArticleIdList><ArticleId IdType="pubmed">14711682</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Dec;71(12):8500-5</Citation><ArticleIdList><ArticleId IdType="pubmed">16332840</ArticleId></ArticleIdList></Reference><Reference><Citation>J Bacteriol. 1952 Jan;63(1):87-98</Citation><ArticleIdList><ArticleId IdType="pubmed">14927551</ArticleId></ArticleIdList></Reference><Reference><Citation>J Bacteriol. 1985 Apr;162(1):328-34</Citation><ArticleIdList><ArticleId IdType="pubmed">3884593</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2004 Apr 1;48(1):109-18</Citation><ArticleIdList><ArticleId IdType="pubmed">19712436</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2006 Aug;57(2):302-10</Citation><ArticleIdList><ArticleId IdType="pubmed">16867147</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1986 Jun;83(12):4403-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16593714</ArticleId></ArticleIdList></Reference><Reference><Citation>Infect Immun. 2004 Oct;72(10):5613-21</Citation><ArticleIdList><ArticleId IdType="pubmed">15385458</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiology. 2006 Jun;152(Pt 6):1765-76</Citation><ArticleIdList><ArticleId IdType="pubmed">16735739</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2006 Mar;72(3):2092-101</Citation><ArticleIdList><ArticleId IdType="pubmed">16517658</ArticleId></ArticleIdList></Reference><Reference><Citation>J Theor Biol. 1998 Jan 7;190(1):63-8</Citation><ArticleIdList><ArticleId IdType="pubmed">9473391</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Microbiol. 2000 May;36(3):749-61</Citation><ArticleIdList><ArticleId IdType="pubmed">10844662</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1997 Sep 1;25(17):3389-402</Citation><ArticleIdList><ArticleId IdType="pubmed">9254694</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Appl Microbiol. 2006 Nov;29(7):539-56</Citation><ArticleIdList><ArticleId IdType="pubmed">16919907</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WillowV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001854 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001854 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= WillowV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:19060168
|texte= Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:19060168" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a WillowV1
| This area was generated with Dilib version V0.6.37. |  |