Combination of culture-dependent and -independent methods reveals diverse acyl homoserine lactone-producers from rhizosphere of wetland plants.
Identifieur interne : 001172 ( Main/Corpus ); précédent : 001171; suivant : 001173Combination of culture-dependent and -independent methods reveals diverse acyl homoserine lactone-producers from rhizosphere of wetland plants.
Auteurs : Yanhua Zeng ; Zhiliang Yu ; Yili HuangSource :
- Current microbiology [ 1432-0991 ] ; 2014.
English descriptors
- KwdEn :
- Acyl-Butyrolactones (metabolism), Bacteria (genetics), Bacteria (isolation & purification), Bacteria (metabolism), Chromatography, Thin Layer (MeSH), Ligases (genetics), Molecular Sequence Data (MeSH), Poaceae (microbiology), Rhizosphere (MeSH), Salix (microbiology), Sequence Analysis, DNA (MeSH), Wetlands (MeSH).
- MESH :
- chemical , genetics : Ligases.
- chemical , metabolism : Acyl-Butyrolactones.
- genetics : Bacteria.
- isolation & purification : Bacteria.
- metabolism : Bacteria.
- microbiology : Poaceae, Salix.
- Chromatography, Thin Layer, Molecular Sequence Data, Rhizosphere, Sequence Analysis, DNA, Wetlands.
Abstract
The culture-dependent method and a degenerate primer-based culture-independent method were combined in an effort to identify N-acyl homoserine lactone (AHL) producers in rhizosphere of wetland plants, Salix babylonica (willow) and Phragmites australis (reed). Overall, eight potential AHL-producing genera were found, which were Aeromonas, Pseudomonas, Polymorphum, Agrobacterium, Rhizobium, Sinorhizobium, Ensifer, and Pectobacterium. Thin layer chromatograph assay revealed various AHL profiles from cultivable AHL-producers. The degenerate primer pair RAHL352F and RAHL461R was found to cover AHL synthetase genes from families Rhizobiaceae and Rhodobacteraceae. Little overlap was found in taxa of potential AHL-producers obtained by the two methods, indicating that they were well complement to each other. This is the first survey for AHL-producers that employed combined culture-dependent and -independent methods.
DOI: 10.1007/s00284-013-0513-4
PubMed: 24370628
Links to Exploration step
pubmed:24370628Le document en format XML
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Overall, eight potential AHL-producing genera were found, which were Aeromonas, Pseudomonas, Polymorphum, Agrobacterium, Rhizobium, Sinorhizobium, Ensifer, and Pectobacterium. Thin layer chromatograph assay revealed various AHL profiles from cultivable AHL-producers. The degenerate primer pair RAHL352F and RAHL461R was found to cover AHL synthetase genes from families Rhizobiaceae and Rhodobacteraceae. Little overlap was found in taxa of potential AHL-producers obtained by the two methods, indicating that they were well complement to each other. This is the first survey for AHL-producers that employed combined culture-dependent and -independent methods.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24370628</PMID><DateCompleted><Year>2014</Year><Month>10</Month><Day>20</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-0991</ISSN><JournalIssue CitedMedium="Internet"><Volume>68</Volume><Issue>5</Issue><PubDate><Year>2014</Year><Month>May</Month></PubDate></JournalIssue><Title>Current microbiology</Title><ISOAbbreviation>Curr Microbiol</ISOAbbreviation></Journal><ArticleTitle>Combination of culture-dependent and -independent methods reveals diverse acyl homoserine lactone-producers from rhizosphere of wetland plants.</ArticleTitle><Pagination><MedlinePgn>587-93</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00284-013-0513-4</ELocationID><Abstract><AbstractText>The culture-dependent method and a degenerate primer-based culture-independent method were combined in an effort to identify N-acyl homoserine lactone (AHL) producers in rhizosphere of wetland plants, Salix babylonica (willow) and Phragmites australis (reed). Overall, eight potential AHL-producing genera were found, which were Aeromonas, Pseudomonas, Polymorphum, Agrobacterium, Rhizobium, Sinorhizobium, Ensifer, and Pectobacterium. Thin layer chromatograph assay revealed various AHL profiles from cultivable AHL-producers. The degenerate primer pair RAHL352F and RAHL461R was found to cover AHL synthetase genes from families Rhizobiaceae and Rhodobacteraceae. Little overlap was found in taxa of potential AHL-producers obtained by the two methods, indicating that they were well complement to each other. 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