Allelic variation in a willow warbler genomic region is associated with climate clines.
Identifieur interne : 001118 ( Main/Corpus ); précédent : 001117; suivant : 001119Allelic variation in a willow warbler genomic region is associated with climate clines.
Auteurs : Keith W. Larson ; Miriam Liedvogel ; Brianne Addison ; Oddmund Kleven ; Terje Laskemoen ; Jan T. Lifjeld ; Max Lundberg ; Susanne Akesson ; Staffan BenschSource :
- PloS one [ 1932-6203 ] ; 2014.
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Abstract
Local adaptation is an important process contributing to population differentiation which can occur in continuous or isolated populations connected by various amounts of gene flow. The willow warbler (Phylloscopus trochilus) is one of the most common songbirds in Fennoscandia. It has a continuous breeding distribution where it is found in all forested habitats from sea level to the tree line and therefore constitutes an ideal species for the study of locally adapted genes associated with environmental gradients. Previous studies in this species identified a genetic marker (AFLP-WW1) that showed a steep north-south cline in central Sweden with one allele associated with coastal lowland habitats and the other with mountainous habitats. It was further demonstrated that this marker is embedded in a highly differentiated chromosome region that spans several megabases. In the present study, we sampled 2,355 individuals at 128 sites across all of Fennoscandia to study the geographic and climatic variables associated with the allele frequency distributions of WW1. Our results demonstrate that 1) allele frequency patterns significantly differ between mountain and lowland populations, 2) these allele differences coincide with extreme temperature conditions and the short growing season in the mountains, and milder conditions in coastal areas, and 3) the northern-allele or "altitude variant" of WW1 occurs in willow warblers that occupy mountainous habitat regardless of subspecies. Finally these results suggest that climate may exert selection on the genomic region associated with these alleles and would allow us to develop testable predictions for the distribution of the genetic marker based on climate change scenarios.
DOI: 10.1371/journal.pone.0095252
PubMed: 24788148
PubMed Central: PMC4006793
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Larson</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Liedvogel, Miriam" sort="Liedvogel, Miriam" uniqKey="Liedvogel M" first="Miriam" last="Liedvogel">Miriam Liedvogel</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Addison, Brianne" sort="Addison, Brianne" uniqKey="Addison B" first="Brianne" last="Addison">Brianne Addison</name><affiliation><nlm:affiliation>School of Science and Health, University of Western Sydney, Penrith, New South Wales, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Kleven, Oddmund" sort="Kleven, Oddmund" uniqKey="Kleven O" first="Oddmund" last="Kleven">Oddmund Kleven</name><affiliation><nlm:affiliation>Natural History Museum, University of Oslo, Oslo, Norway; Norweigen Institute of Nature Research, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Laskemoen, Terje" sort="Laskemoen, Terje" uniqKey="Laskemoen T" first="Terje" last="Laskemoen">Terje Laskemoen</name><affiliation><nlm:affiliation>Natural History Museum, University of Oslo, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Lifjeld, Jan T" sort="Lifjeld, Jan T" uniqKey="Lifjeld J" first="Jan T" last="Lifjeld">Jan T. Lifjeld</name><affiliation><nlm:affiliation>Natural History Museum, University of Oslo, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Lundberg, Max" sort="Lundberg, Max" uniqKey="Lundberg M" first="Max" last="Lundberg">Max Lundberg</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Akesson, Susanne" sort="Akesson, Susanne" uniqKey="Akesson S" first="Susanne" last="Akesson">Susanne Akesson</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Bensch, Staffan" sort="Bensch, Staffan" uniqKey="Bensch S" first="Staffan" last="Bensch">Staffan Bensch</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24788148</idno><idno type="pmid">24788148</idno><idno type="doi">10.1371/journal.pone.0095252</idno><idno type="pmc">PMC4006793</idno><idno type="wicri:Area/Main/Corpus">001118</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001118</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Allelic variation in a willow warbler genomic region is associated with climate clines.</title><author><name sortKey="Larson, Keith W" sort="Larson, Keith W" uniqKey="Larson K" first="Keith W" last="Larson">Keith W. Larson</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Liedvogel, Miriam" sort="Liedvogel, Miriam" uniqKey="Liedvogel M" first="Miriam" last="Liedvogel">Miriam Liedvogel</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Addison, Brianne" sort="Addison, Brianne" uniqKey="Addison B" first="Brianne" last="Addison">Brianne Addison</name><affiliation><nlm:affiliation>School of Science and Health, University of Western Sydney, Penrith, New South Wales, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Kleven, Oddmund" sort="Kleven, Oddmund" uniqKey="Kleven O" first="Oddmund" last="Kleven">Oddmund Kleven</name><affiliation><nlm:affiliation>Natural History Museum, University of Oslo, Oslo, Norway; Norweigen Institute of Nature Research, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Laskemoen, Terje" sort="Laskemoen, Terje" uniqKey="Laskemoen T" first="Terje" last="Laskemoen">Terje Laskemoen</name><affiliation><nlm:affiliation>Natural History Museum, University of Oslo, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Lifjeld, Jan T" sort="Lifjeld, Jan T" uniqKey="Lifjeld J" first="Jan T" last="Lifjeld">Jan T. Lifjeld</name><affiliation><nlm:affiliation>Natural History Museum, University of Oslo, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Lundberg, Max" sort="Lundberg, Max" uniqKey="Lundberg M" first="Max" last="Lundberg">Max Lundberg</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Akesson, Susanne" sort="Akesson, Susanne" uniqKey="Akesson S" first="Susanne" last="Akesson">Susanne Akesson</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Bensch, Staffan" sort="Bensch, Staffan" uniqKey="Bensch S" first="Staffan" last="Bensch">Staffan Bensch</name><affiliation><nlm:affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alleles (MeSH)</term><term>Climate (MeSH)</term><term>Ecosystem (MeSH)</term><term>Gene-Environment Interaction (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Geography (MeSH)</term><term>Models, Theoretical (MeSH)</term><term>Salix (genetics)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Salix</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Alleles</term><term>Climate</term><term>Ecosystem</term><term>Gene-Environment Interaction</term><term>Genetic Variation</term><term>Genome, Plant</term><term>Geography</term><term>Models, Theoretical</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Local adaptation is an important process contributing to population differentiation which can occur in continuous or isolated populations connected by various amounts of gene flow. The willow warbler (Phylloscopus trochilus) is one of the most common songbirds in Fennoscandia. It has a continuous breeding distribution where it is found in all forested habitats from sea level to the tree line and therefore constitutes an ideal species for the study of locally adapted genes associated with environmental gradients. Previous studies in this species identified a genetic marker (AFLP-WW1) that showed a steep north-south cline in central Sweden with one allele associated with coastal lowland habitats and the other with mountainous habitats. It was further demonstrated that this marker is embedded in a highly differentiated chromosome region that spans several megabases. In the present study, we sampled 2,355 individuals at 128 sites across all of Fennoscandia to study the geographic and climatic variables associated with the allele frequency distributions of WW1. Our results demonstrate that 1) allele frequency patterns significantly differ between mountain and lowland populations, 2) these allele differences coincide with extreme temperature conditions and the short growing season in the mountains, and milder conditions in coastal areas, and 3) the northern-allele or "altitude variant" of WW1 occurs in willow warblers that occupy mountainous habitat regardless of subspecies. Finally these results suggest that climate may exert selection on the genomic region associated with these alleles and would allow us to develop testable predictions for the distribution of the genetic marker based on climate change scenarios. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24788148</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>18</Day></DateCompleted><DateRevised><Year>2019</Year><Month>02</Month><Day>23</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>9</Volume><Issue>5</Issue><PubDate><Year>2014</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Allelic variation in a willow warbler genomic region is associated with climate clines.</ArticleTitle><Pagination><MedlinePgn>e95252</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0095252</ELocationID><Abstract><AbstractText>Local adaptation is an important process contributing to population differentiation which can occur in continuous or isolated populations connected by various amounts of gene flow. The willow warbler (Phylloscopus trochilus) is one of the most common songbirds in Fennoscandia. It has a continuous breeding distribution where it is found in all forested habitats from sea level to the tree line and therefore constitutes an ideal species for the study of locally adapted genes associated with environmental gradients. Previous studies in this species identified a genetic marker (AFLP-WW1) that showed a steep north-south cline in central Sweden with one allele associated with coastal lowland habitats and the other with mountainous habitats. It was further demonstrated that this marker is embedded in a highly differentiated chromosome region that spans several megabases. In the present study, we sampled 2,355 individuals at 128 sites across all of Fennoscandia to study the geographic and climatic variables associated with the allele frequency distributions of WW1. Our results demonstrate that 1) allele frequency patterns significantly differ between mountain and lowland populations, 2) these allele differences coincide with extreme temperature conditions and the short growing season in the mountains, and milder conditions in coastal areas, and 3) the northern-allele or "altitude variant" of WW1 occurs in willow warblers that occupy mountainous habitat regardless of subspecies. Finally these results suggest that climate may exert selection on the genomic region associated with these alleles and would allow us to develop testable predictions for the distribution of the genetic marker based on climate change scenarios. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Larson</LastName><ForeName>Keith W</ForeName><Initials>KW</Initials><AffiliationInfo><Affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liedvogel</LastName><ForeName>Miriam</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biology, Centre for Animal Movement Research, Ecology Building, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Addison</LastName><ForeName>Brianne</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>School of Science and Health, University of Western Sydney, Penrith, New South Wales, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kleven</LastName><ForeName>Oddmund</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Natural History Museum, University of Oslo, Oslo, Norway; Norweigen Institute of Nature Research, Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Laskemoen</LastName><ForeName>Terje</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Natural History Museum, University of Oslo, Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lifjeld</LastName><ForeName>Jan T</ForeName><Initials>JT</Initials><AffiliationInfo><Affiliation>Natural History Museum, University of Oslo, Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lundberg</LastName><ForeName>Max</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biology, 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