Characterization of early transcriptional responses to cadmium in the root and leaf of Cd-resistant Salix matsudana Koidz.
Identifieur interne : 000E14 ( Main/Corpus ); précédent : 000E13; suivant : 000E15Characterization of early transcriptional responses to cadmium in the root and leaf of Cd-resistant Salix matsudana Koidz.
Auteurs : Jingli Yang ; Kun Li ; Wei Zheng ; Haizhen Zhang ; Xudong Cao ; Yunxiang Lan ; Chuanping Yang ; Chenghao LiSource :
- BMC genomics [ 1471-2164 ] ; 2015.
English descriptors
- KwdEn :
- Brassinosteroids (metabolism), Cadmium (toxicity), Environmental Pollutants (toxicity), Gene Expression Regulation, Plant (drug effects), Lignin (metabolism), Plant Leaves (drug effects), Plant Leaves (metabolism), Plant Roots (drug effects), Plant Roots (metabolism), Salix (drug effects), Salix (genetics).
- MESH :
- chemical , metabolism : Brassinosteroids, Lignin.
- chemical , toxicity : Cadmium, Environmental Pollutants.
- drug effects : Gene Expression Regulation, Plant, Plant Leaves, Plant Roots, Salix.
- genetics : Salix.
- metabolism : Plant Leaves, Plant Roots.
Abstract
BACKGROUND
Salix matsudana Koidz. is a fast growing tree species. It has a high cadmium (Cd) tolerance capacity, making it potentially suitable for phytoremediation. Presently, transcriptomic and physiological Cd response mechanisms are poorly understood. Transcriptomic analysis in early response to high (50 μM) Cd levels was investigated in leaf and root of Cd-resistant S. matsudana Koidz..
RESULTS
Analysis of the response profiles demonstrate the existence of a complex transcriptional network in the root and leaf when exposed to Cd. The main response in the root involved up-regulation of genes associated with defence response via callose deposition in the cell wall and cell wall thickening. In the leaf, transcripts related to biotic stress signalling and secondary metabolism were activated. Additionally, many lignin and brassinosteroids synthesis pathway genes were induced mainly in the leaf, indicating that gene response to Cd was tissue-specific. The Cd transcriptome results were consistent with observed physiological changes.
CONCLUSION
The sub-localization, transcriptional network, and physiological regulation demonstrate the tissue-specific manner of Cd response, and provide a novel insight into in early response of tree species to Cd exposure.
DOI: 10.1186/s12864-015-1923-4
PubMed: 26381125
PubMed Central: PMC4573677
Links to Exploration step
pubmed:26381125Le document en format XML
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ml5774609397_l@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Zheng, Wei" sort="Zheng, Wei" uniqKey="Zheng W" first="Wei" last="Zheng">Wei Zheng</name><affiliation><nlm:affiliation>Research Center on Life Sciences and Environmental Sciences, Harbin University of Commerce, Harbin, 150076, China. wei2013zheng@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Haizhen" sort="Zhang, Haizhen" uniqKey="Zhang H" first="Haizhen" last="Zhang">Haizhen Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. snowsun04006@hotmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Cao, Xudong" sort="Cao, Xudong" uniqKey="Cao X" first="Xudong" last="Cao">Xudong Cao</name><affiliation><nlm:affiliation>School of Forestry, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. ml5546129873@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Lan, Yunxiang" sort="Lan, Yunxiang" uniqKey="Lan Y" first="Yunxiang" last="Lan">Yunxiang Lan</name><affiliation><nlm:affiliation>School of Forestry, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. lxlikun@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Yang, Chuanping" sort="Yang, Chuanping" uniqKey="Yang C" first="Chuanping" last="Yang">Chuanping Yang</name><affiliation><nlm:affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. yangcp@nefu.edu.cn.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Chenghao" sort="Li, Chenghao" uniqKey="Li C" first="Chenghao" last="Li">Chenghao Li</name><affiliation><nlm:affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. chli0@163.com.</nlm:affiliation></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Brassinosteroids (metabolism)</term><term>Cadmium (toxicity)</term><term>Environmental Pollutants (toxicity)</term><term>Gene Expression Regulation, Plant (drug effects)</term><term>Lignin (metabolism)</term><term>Plant Leaves (drug effects)</term><term>Plant Leaves (metabolism)</term><term>Plant Roots (drug effects)</term><term>Plant Roots (metabolism)</term><term>Salix (drug effects)</term><term>Salix (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Brassinosteroids</term><term>Lignin</term></keywords><keywords scheme="MESH" type="chemical" qualifier="toxicity" xml:lang="en"><term>Cadmium</term><term>Environmental Pollutants</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Plant Leaves</term><term>Plant Roots</term><term>Salix</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Salix</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plant Leaves</term><term>Plant Roots</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Salix matsudana Koidz. is a fast growing tree species. It has a high cadmium (Cd) tolerance capacity, making it potentially suitable for phytoremediation. Presently, transcriptomic and physiological Cd response mechanisms are poorly understood. Transcriptomic analysis in early response to high (50 μM) Cd levels was investigated in leaf and root of Cd-resistant S. matsudana Koidz..</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Analysis of the response profiles demonstrate the existence of a complex transcriptional network in the root and leaf when exposed to Cd. The main response in the root involved up-regulation of genes associated with defence response via callose deposition in the cell wall and cell wall thickening. In the leaf, transcripts related to biotic stress signalling and secondary metabolism were activated. Additionally, many lignin and brassinosteroids synthesis pathway genes were induced mainly in the leaf, indicating that gene response to Cd was tissue-specific. The Cd transcriptome results were consistent with observed physiological changes.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>The sub-localization, transcriptional network, and physiological regulation demonstrate the tissue-specific manner of Cd response, and provide a novel insight into in early response of tree species to Cd exposure.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26381125</PMID><DateCompleted><Year>2016</Year><Month>07</Month><Day>18</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>16</Volume><PubDate><Year>2015</Year><Month>Sep</Month><Day>17</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Characterization of early transcriptional responses to cadmium in the root and leaf of Cd-resistant Salix matsudana Koidz.</ArticleTitle><Pagination><MedlinePgn>705</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-015-1923-4</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Salix matsudana Koidz. is a fast growing tree species. It has a high cadmium (Cd) tolerance capacity, making it potentially suitable for phytoremediation. Presently, transcriptomic and physiological Cd response mechanisms are poorly understood. Transcriptomic analysis in early response to high (50 μM) Cd levels was investigated in leaf and root of Cd-resistant S. matsudana Koidz..</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Analysis of the response profiles demonstrate the existence of a complex transcriptional network in the root and leaf when exposed to Cd. The main response in the root involved up-regulation of genes associated with defence response via callose deposition in the cell wall and cell wall thickening. In the leaf, transcripts related to biotic stress signalling and secondary metabolism were activated. Additionally, many lignin and brassinosteroids synthesis pathway genes were induced mainly in the leaf, indicating that gene response to Cd was tissue-specific. The Cd transcriptome results were consistent with observed physiological changes.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">The sub-localization, transcriptional network, and physiological regulation demonstrate the tissue-specific manner of Cd response, and provide a novel insight into in early response of tree species to Cd exposure.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Jingli</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. yifan85831647@sina.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Kun</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>School of Forestry, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. ml5774609397_l@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Wei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Research Center on Life Sciences and Environmental Sciences, Harbin University of Commerce, Harbin, 150076, China. wei2013zheng@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Haizhen</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. snowsun04006@hotmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cao</LastName><ForeName>Xudong</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>School of Forestry, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. ml5546129873@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lan</LastName><ForeName>Yunxiang</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Forestry, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. lxlikun@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Chuanping</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. yangcp@nefu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Chenghao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. chli0@163.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>09</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D060406">Brassinosteroids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004785">Environmental Pollutants</NameOfSubstance></Chemical><Chemical><RegistryNumber>00BH33GNGH</RegistryNumber><NameOfSubstance UI="D002104">Cadmium</NameOfSubstance></Chemical><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance UI="D008031">Lignin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D060406" MajorTopicYN="N">Brassinosteroids</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002104" MajorTopicYN="N">Cadmium</DescriptorName><QualifierName UI="Q000633" MajorTopicYN="Y">toxicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004785" MajorTopicYN="N">Environmental Pollutants</DescriptorName><QualifierName UI="Q000633" MajorTopicYN="N">toxicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug 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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:26381125" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a WillowV1
| This area was generated with Dilib version V0.6.37. |  |