Serveur d'exploration sur le saule

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

DNA methylation on N(6)-adenine in mammalian embryonic stem cells.

Identifieur interne : 000C58 ( Main/Corpus ); précédent : 000C57; suivant : 000C59

DNA methylation on N(6)-adenine in mammalian embryonic stem cells.

Auteurs : Tao P. Wu ; Tao Wang ; Matthew G. Seetin ; Yongquan Lai ; Shijia Zhu ; Kaixuan Lin ; Yifei Liu ; Stephanie D. Byrum ; Samuel G. Mackintosh ; Mei Zhong ; Alan Tackett ; Guilin Wang ; Lawrence S. Hon ; Gang Fang ; James A. Swenberg ; Andrew Z. Xiao

Source :

RBID : pubmed:27027282

English descriptors

Abstract

It has been widely accepted that 5-methylcytosine is the only form of DNA methylation in mammalian genomes. Here we identify N(6)-methyladenine as another form of DNA modification in mouse embryonic stem cells. Alkbh1 encodes a demethylase for N(6)-methyladenine. An increase of N(6)-methyladenine levels in Alkbh1-deficient cells leads to transcriptional silencing. N(6)-methyladenine deposition is inversely correlated with the evolutionary age of LINE-1 transposons; its deposition is strongly enriched at young (<1.5 million years old) but not old (>6 million years old) L1 elements. The deposition of N(6)-methyladenine correlates with epigenetic silencing of such LINE-1 transposons, together with their neighbouring enhancers and genes, thereby resisting the gene activation signals during embryonic stem cell differentiation. As young full-length LINE-1 transposons are strongly enriched on the X chromosome, genes located on the X chromosome are also silenced. Thus, N(6)-methyladenine developed a new role in epigenetic silencing in mammalian evolution distinct from its role in gene activation in other organisms. Our results demonstrate that N(6)-methyladenine constitutes a crucial component of the epigenetic regulation repertoire in mammalian genomes.

DOI: 10.1038/nature17640
PubMed: 27027282
PubMed Central: PMC4977844

Links to Exploration step

pubmed:27027282

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">DNA methylation on N(6)-adenine in mammalian embryonic stem cells.</title>
<author>
<name sortKey="Wu, Tao P" sort="Wu, Tao P" uniqKey="Wu T" first="Tao P" last="Wu">Tao P. Wu</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Wang, Tao" sort="Wang, Tao" uniqKey="Wang T" first="Tao" last="Wang">Tao Wang</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Seetin, Matthew G" sort="Seetin, Matthew G" uniqKey="Seetin M" first="Matthew G" last="Seetin">Matthew G. Seetin</name>
<affiliation>
<nlm:affiliation>Pacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lai, Yongquan" sort="Lai, Yongquan" uniqKey="Lai Y" first="Yongquan" last="Lai">Yongquan Lai</name>
<affiliation>
<nlm:affiliation>Environmental Sciences &Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhu, Shijia" sort="Zhu, Shijia" uniqKey="Zhu S" first="Shijia" last="Zhu">Shijia Zhu</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lin, Kaixuan" sort="Lin, Kaixuan" uniqKey="Lin K" first="Kaixuan" last="Lin">Kaixuan Lin</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Liu, Yifei" sort="Liu, Yifei" uniqKey="Liu Y" first="Yifei" last="Liu">Yifei Liu</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Byrum, Stephanie D" sort="Byrum, Stephanie D" uniqKey="Byrum S" first="Stephanie D" last="Byrum">Stephanie D. Byrum</name>
<affiliation>
<nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Mackintosh, Samuel G" sort="Mackintosh, Samuel G" uniqKey="Mackintosh S" first="Samuel G" last="Mackintosh">Samuel G. Mackintosh</name>
<affiliation>
<nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhong, Mei" sort="Zhong, Mei" uniqKey="Zhong M" first="Mei" last="Zhong">Mei Zhong</name>
<affiliation>
<nlm:affiliation>Yale Stem Cell Center and Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Tackett, Alan" sort="Tackett, Alan" uniqKey="Tackett A" first="Alan" last="Tackett">Alan Tackett</name>
<affiliation>
<nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Wang, Guilin" sort="Wang, Guilin" uniqKey="Wang G" first="Guilin" last="Wang">Guilin Wang</name>
<affiliation>
<nlm:affiliation>Department of Molecular Biophysics &Biochemistry, Yale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Hon, Lawrence S" sort="Hon, Lawrence S" uniqKey="Hon L" first="Lawrence S" last="Hon">Lawrence S. Hon</name>
<affiliation>
<nlm:affiliation>Pacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Fang, Gang" sort="Fang, Gang" uniqKey="Fang G" first="Gang" last="Fang">Gang Fang</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Swenberg, James A" sort="Swenberg, James A" uniqKey="Swenberg J" first="James A" last="Swenberg">James A. Swenberg</name>
<affiliation>
<nlm:affiliation>Environmental Sciences &Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Xiao, Andrew Z" sort="Xiao, Andrew Z" uniqKey="Xiao A" first="Andrew Z" last="Xiao">Andrew Z. Xiao</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2016">2016</date>
<idno type="RBID">pubmed:27027282</idno>
<idno type="pmid">27027282</idno>
<idno type="doi">10.1038/nature17640</idno>
<idno type="pmc">PMC4977844</idno>
<idno type="wicri:Area/Main/Corpus">000C58</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000C58</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">DNA methylation on N(6)-adenine in mammalian embryonic stem cells.</title>
<author>
<name sortKey="Wu, Tao P" sort="Wu, Tao P" uniqKey="Wu T" first="Tao P" last="Wu">Tao P. Wu</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Wang, Tao" sort="Wang, Tao" uniqKey="Wang T" first="Tao" last="Wang">Tao Wang</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Seetin, Matthew G" sort="Seetin, Matthew G" uniqKey="Seetin M" first="Matthew G" last="Seetin">Matthew G. Seetin</name>
<affiliation>
<nlm:affiliation>Pacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lai, Yongquan" sort="Lai, Yongquan" uniqKey="Lai Y" first="Yongquan" last="Lai">Yongquan Lai</name>
<affiliation>
<nlm:affiliation>Environmental Sciences &Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhu, Shijia" sort="Zhu, Shijia" uniqKey="Zhu S" first="Shijia" last="Zhu">Shijia Zhu</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lin, Kaixuan" sort="Lin, Kaixuan" uniqKey="Lin K" first="Kaixuan" last="Lin">Kaixuan Lin</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Liu, Yifei" sort="Liu, Yifei" uniqKey="Liu Y" first="Yifei" last="Liu">Yifei Liu</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Byrum, Stephanie D" sort="Byrum, Stephanie D" uniqKey="Byrum S" first="Stephanie D" last="Byrum">Stephanie D. Byrum</name>
<affiliation>
<nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Mackintosh, Samuel G" sort="Mackintosh, Samuel G" uniqKey="Mackintosh S" first="Samuel G" last="Mackintosh">Samuel G. Mackintosh</name>
<affiliation>
<nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhong, Mei" sort="Zhong, Mei" uniqKey="Zhong M" first="Mei" last="Zhong">Mei Zhong</name>
<affiliation>
<nlm:affiliation>Yale Stem Cell Center and Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Tackett, Alan" sort="Tackett, Alan" uniqKey="Tackett A" first="Alan" last="Tackett">Alan Tackett</name>
<affiliation>
<nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Wang, Guilin" sort="Wang, Guilin" uniqKey="Wang G" first="Guilin" last="Wang">Guilin Wang</name>
<affiliation>
<nlm:affiliation>Department of Molecular Biophysics &Biochemistry, Yale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Hon, Lawrence S" sort="Hon, Lawrence S" uniqKey="Hon L" first="Lawrence S" last="Hon">Lawrence S. Hon</name>
<affiliation>
<nlm:affiliation>Pacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Fang, Gang" sort="Fang, Gang" uniqKey="Fang G" first="Gang" last="Fang">Gang Fang</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Swenberg, James A" sort="Swenberg, James A" uniqKey="Swenberg J" first="James A" last="Swenberg">James A. Swenberg</name>
<affiliation>
<nlm:affiliation>Environmental Sciences &Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Xiao, Andrew Z" sort="Xiao, Andrew Z" uniqKey="Xiao A" first="Andrew Z" last="Xiao">Andrew Z. Xiao</name>
<affiliation>
<nlm:affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</nlm:affiliation>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Nature</title>
<idno type="eISSN">1476-4687</idno>
<imprint>
<date when="2016" type="published">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Adenine (analogs & derivatives)</term>
<term>Adenine (metabolism)</term>
<term>AlkB Homolog 1, Histone H2a Dioxygenase (MeSH)</term>
<term>Animals (MeSH)</term>
<term>Cell Differentiation (genetics)</term>
<term>DNA Methylation (MeSH)</term>
<term>DNA Transposable Elements (genetics)</term>
<term>DNA-(Apurinic or Apyrimidinic Site) Lyase (deficiency)</term>
<term>DNA-(Apurinic or Apyrimidinic Site) Lyase (genetics)</term>
<term>DNA-(Apurinic or Apyrimidinic Site) Lyase (metabolism)</term>
<term>Enhancer Elements, Genetic (genetics)</term>
<term>Epigenesis, Genetic (genetics)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>Gene Silencing (MeSH)</term>
<term>Long Interspersed Nucleotide Elements (genetics)</term>
<term>Mammals (genetics)</term>
<term>Mice (MeSH)</term>
<term>Mouse Embryonic Stem Cells (cytology)</term>
<term>Mouse Embryonic Stem Cells (metabolism)</term>
<term>Up-Regulation (genetics)</term>
<term>X Chromosome (genetics)</term>
<term>X Chromosome (metabolism)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="analogs & derivatives" xml:lang="en">
<term>Adenine</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="deficiency" xml:lang="en">
<term>DNA-(Apurinic or Apyrimidinic Site) Lyase</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>DNA Transposable Elements</term>
<term>DNA-(Apurinic or Apyrimidinic Site) Lyase</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en">
<term>Adenine</term>
<term>DNA-(Apurinic or Apyrimidinic Site) Lyase</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en">
<term>AlkB Homolog 1, Histone H2a Dioxygenase</term>
</keywords>
<keywords scheme="MESH" qualifier="cytology" xml:lang="en">
<term>Mouse Embryonic Stem Cells</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Cell Differentiation</term>
<term>Enhancer Elements, Genetic</term>
<term>Epigenesis, Genetic</term>
<term>Long Interspersed Nucleotide Elements</term>
<term>Mammals</term>
<term>Up-Regulation</term>
<term>X Chromosome</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en">
<term>Mouse Embryonic Stem Cells</term>
<term>X Chromosome</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Animals</term>
<term>DNA Methylation</term>
<term>Evolution, Molecular</term>
<term>Gene Silencing</term>
<term>Mice</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">It has been widely accepted that 5-methylcytosine is the only form of DNA methylation in mammalian genomes. Here we identify N(6)-methyladenine as another form of DNA modification in mouse embryonic stem cells. Alkbh1 encodes a demethylase for N(6)-methyladenine. An increase of N(6)-methyladenine levels in Alkbh1-deficient cells leads to transcriptional silencing. N(6)-methyladenine deposition is inversely correlated with the evolutionary age of LINE-1 transposons; its deposition is strongly enriched at young (<1.5 million years old) but not old (>6 million years old) L1 elements. The deposition of N(6)-methyladenine correlates with epigenetic silencing of such LINE-1 transposons, together with their neighbouring enhancers and genes, thereby resisting the gene activation signals during embryonic stem cell differentiation. As young full-length LINE-1 transposons are strongly enriched on the X chromosome, genes located on the X chromosome are also silenced. Thus, N(6)-methyladenine developed a new role in epigenetic silencing in mammalian evolution distinct from its role in gene activation in other organisms. Our results demonstrate that N(6)-methyladenine constitutes a crucial component of the epigenetic regulation repertoire in mammalian genomes. </div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">27027282</PMID>
<DateCompleted>
<Year>2016</Year>
<Month>05</Month>
<Day>10</Day>
</DateCompleted>
<DateRevised>
<Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print-Electronic">
<Journal>
<ISSN IssnType="Electronic">1476-4687</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>532</Volume>
<Issue>7599</Issue>
<PubDate>
<Year>2016</Year>
<Month>Apr</Month>
<Day>21</Day>
</PubDate>
</JournalIssue>
<Title>Nature</Title>
<ISOAbbreviation>Nature</ISOAbbreviation>
</Journal>
<ArticleTitle>DNA methylation on N(6)-adenine in mammalian embryonic stem cells.</ArticleTitle>
<Pagination>
<MedlinePgn>329-33</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1038/nature17640</ELocationID>
<Abstract>
<AbstractText>It has been widely accepted that 5-methylcytosine is the only form of DNA methylation in mammalian genomes. Here we identify N(6)-methyladenine as another form of DNA modification in mouse embryonic stem cells. Alkbh1 encodes a demethylase for N(6)-methyladenine. An increase of N(6)-methyladenine levels in Alkbh1-deficient cells leads to transcriptional silencing. N(6)-methyladenine deposition is inversely correlated with the evolutionary age of LINE-1 transposons; its deposition is strongly enriched at young (<1.5 million years old) but not old (>6 million years old) L1 elements. The deposition of N(6)-methyladenine correlates with epigenetic silencing of such LINE-1 transposons, together with their neighbouring enhancers and genes, thereby resisting the gene activation signals during embryonic stem cell differentiation. As young full-length LINE-1 transposons are strongly enriched on the X chromosome, genes located on the X chromosome are also silenced. Thus, N(6)-methyladenine developed a new role in epigenetic silencing in mammalian evolution distinct from its role in gene activation in other organisms. Our results demonstrate that N(6)-methyladenine constitutes a crucial component of the epigenetic regulation repertoire in mammalian genomes. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Wu</LastName>
<ForeName>Tao P</ForeName>
<Initials>TP</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Seetin</LastName>
<ForeName>Matthew G</ForeName>
<Initials>MG</Initials>
<AffiliationInfo>
<Affiliation>Pacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lai</LastName>
<ForeName>Yongquan</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Environmental Sciences &Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zhu</LastName>
<ForeName>Shijia</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lin</LastName>
<ForeName>Kaixuan</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Liu</LastName>
<ForeName>Yifei</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Byrum</LastName>
<ForeName>Stephanie D</ForeName>
<Initials>SD</Initials>
<AffiliationInfo>
<Affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Mackintosh</LastName>
<ForeName>Samuel G</ForeName>
<Initials>SG</Initials>
<AffiliationInfo>
<Affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zhong</LastName>
<ForeName>Mei</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Yale Stem Cell Center and Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Tackett</LastName>
<ForeName>Alan</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Guilin</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Biophysics &Biochemistry, Yale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hon</LastName>
<ForeName>Lawrence S</ForeName>
<Initials>LS</Initials>
<AffiliationInfo>
<Affiliation>Pacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fang</LastName>
<ForeName>Gang</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Swenberg</LastName>
<ForeName>James A</ForeName>
<Initials>JA</Initials>
<AffiliationInfo>
<Affiliation>Environmental Sciences &Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Xiao</LastName>
<ForeName>Andrew Z</ForeName>
<Initials>AZ</Initials>
<AffiliationInfo>
<Affiliation>Department of Genetics and Yale Stem Cell Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>P30 ES010126</GrantID>
<Acronym>ES</Acronym>
<Agency>NIEHS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01GM106024</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM106024</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM114472</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>UL1 TR001863</GrantID>
<Acronym>TR</Acronym>
<Agency>NCATS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM114205</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>P20 GM103429</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM114472-01</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01GM114205-01</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>S10OD018445</GrantID>
<Acronym>OD</Acronym>
<Agency>NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>P20GM103429</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>P30 CA016359</GrantID>
<Acronym>CA</Acronym>
<Agency>NCI NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>S10 OD018445</GrantID>
<Acronym>OD</Acronym>
<Agency>NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>P42 ES005948</GrantID>
<Acronym>ES</Acronym>
<Agency>NIEHS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
</GrantList>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2016</Year>
<Month>03</Month>
<Day>30</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Nature</MedlineTA>
<NlmUniqueID>0410462</NlmUniqueID>
<ISSNLinking>0028-0836</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004251">DNA Transposable Elements</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 1.14.11.33</RegistryNumber>
<NameOfSubstance UI="D000071498">AlkB Homolog 1, Histone H2a Dioxygenase</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 1.14.11.33</RegistryNumber>
<NameOfSubstance UI="C529511">Alkbh1 protein, mouse</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 4.2.99.18</RegistryNumber>
<NameOfSubstance UI="D043603">DNA-(Apurinic or Apyrimidinic Site) Lyase</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>JAC85A2161</RegistryNumber>
<NameOfSubstance UI="D000225">Adenine</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>W7IBY2BGAX</RegistryNumber>
<NameOfSubstance UI="C005955">6-methyladenine</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<CommentsCorrectionsList>
<CommentsCorrections RefType="CommentIn">
<RefSource>Nature. 2016 Apr 21;532(7599):319-20</RefSource>
<PMID Version="1">27027294</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D000225" MajorTopicYN="N">Adenine</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="Y">analogs & derivatives</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000071498" MajorTopicYN="N">AlkB Homolog 1, Histone H2a Dioxygenase</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002454" MajorTopicYN="N">Cell Differentiation</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D019175" MajorTopicYN="Y">DNA Methylation</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004251" MajorTopicYN="N">DNA Transposable Elements</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D043603" MajorTopicYN="N">DNA-(Apurinic or Apyrimidinic Site) Lyase</DescriptorName>
<QualifierName UI="Q000172" MajorTopicYN="N">deficiency</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004742" MajorTopicYN="N">Enhancer Elements, Genetic</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D044127" MajorTopicYN="N">Epigenesis, Genetic</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020868" MajorTopicYN="N">Gene Silencing</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020084" MajorTopicYN="N">Long Interspersed Nucleotide Elements</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008322" MajorTopicYN="N">Mammals</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D051379" MajorTopicYN="N">Mice</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000066450" MajorTopicYN="N">Mouse Embryonic Stem Cells</DescriptorName>
<QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D015854" MajorTopicYN="N">Up-Regulation</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014960" MajorTopicYN="N">X Chromosome</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2015</Year>
<Month>08</Month>
<Day>16</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2016</Year>
<Month>03</Month>
<Day>07</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2016</Year>
<Month>3</Month>
<Day>31</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2016</Year>
<Month>3</Month>
<Day>31</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2016</Year>
<Month>5</Month>
<Day>11</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">27027282</ArticleId>
<ArticleId IdType="pii">nature17640</ArticleId>
<ArticleId IdType="doi">10.1038/nature17640</ArticleId>
<ArticleId IdType="pmc">PMC4977844</ArticleId>
<ArticleId IdType="mid">NIHMS805688</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Stem Cells. 2012 Dec;30(12 ):2672-82</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22961808</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2015 May 7;161(4):893-906</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25936838</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2015 May 7;161(4):710-3</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25936836</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2015 May 7;161(4):879-92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25936837</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2004 Sep 2;431(7004):96-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15318244</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2016 Jan 15;351(6270):282-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26816380</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Biochem. 2014;83:585-614</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24905787</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Methods Mol Biol. 2013;977:273-87</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23436370</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2011 Mar 15;27(6):870-1</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21325299</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genes Dev. 2007 Jun 15;21(12):1519-29</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17575053</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Toxicol Sci. 2010 Aug;116(2):441-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20176625</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6634-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10841562</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Mol Cell Biol. 2004 Feb;5(2):148-57</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15040447</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2009 May 1;25(9):1105-11</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19289445</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Genet. 2013 Mar;14(3):204-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23400093</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>FEBS Lett. 1983 Jul 25;158(2):353-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6409666</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cytogenet Cell Genet. 1998;80(1-4):133-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9678347</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Struct Mol Biol. 2013 Mar;20(3):332-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23353788</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2011 Dec;85(23):12315-23</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21957310</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Opin Microbiol. 2013 Apr;16(2):192-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23434113</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Dev Cell. 2010 Nov 16;19(5):662-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21074717</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2013 Nov;41(20):e195</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24030711</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2010 Jun 11;141(6):956-69</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20550932</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2001 Oct;11(10):1677-85</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11591644</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Methods. 2010 Jun;7(6):461-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20453866</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2009;10(3):R25</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19261174</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Proteome Res. 2005 Sep-Oct;4(5):1752-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16212429</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genes Dev. 2014 Jul 1;28(13):1397-409</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24939876</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2009 Aug 1;25(15):1952-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19505939</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Stem Cell. 2014 Sep 4;15(3):281-94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25192463</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>FEBS Lett. 2006 May 29;580(13):3179-84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16684535</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Struct Mol Biol. 2016 Jan;23(1):24-30</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26689968</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2015 May 7;161(4):868-78</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25936839</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Dev Biol. 2011;55(10-12):909-16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22252487</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2010 Nov 03;5(11):e13827</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21072209</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Protoc. 2012 Mar 01;7(3):562-78</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22383036</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013 Jun 25;8(6):e67403</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23825659</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2012 Dec;30(12):1232-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23138224</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Genet. 2008 Aug 29;4(8):e1000172</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18769724</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2008 Oct 3;135(1):23-35</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18854152</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2015 Jan 15;517(7534):321-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25592537</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WillowV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000C58 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 000C58 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    WillowV1
   |flux=    Main
   |étape=   Corpus
   |type=    RBID
   |clé=     pubmed:27027282
   |texte=   DNA methylation on N(6)-adenine in mammalian embryonic stem cells.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i   -Sk "pubmed:27027282" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd   \
       | NlmPubMed2Wicri -a WillowV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Tue Nov 17 16:35:40 2020. Site generation: Tue Nov 17 16:39:32 2020