A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers.
Identifieur interne : 000282 ( Main/Exploration ); précédent : 000281; suivant : 000283A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers.
Auteurs : V. Acheré [France] ; P. Faivre-Rampant ; S. Jeandroz ; G. Besnard ; T. Markussen ; A. Aragones ; M. Fladung ; E. Ritter ; J-M FavreSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 0040-5752 ] ; 2004.
Descripteurs français
- KwdFr :
- ADN ribosomique (génétique), ARN ribosomique 5S (génétique), Cartographie chromosomique (MeSH), Caryotypage (MeSH), Chromosomes de plante (génétique), Génome végétal (MeSH), Génomique (MeSH), Marqueurs génétiques (génétique), Phénotype (MeSH), Picea (génétique), Picea (physiologie), Polymorphisme génétique (génétique), Répétitions microsatellites (génétique), Étiquettes de séquences exprimées (MeSH).
- MESH :
English descriptors
- KwdEn :
- Chromosome Mapping (MeSH), Chromosomes, Plant (genetics), DNA, Ribosomal (genetics), Expressed Sequence Tags (MeSH), Genetic Markers (genetics), Genome, Plant (MeSH), Genomics (MeSH), Karyotyping (MeSH), Microsatellite Repeats (genetics), Phenotype (MeSH), Picea (genetics), Picea (physiology), Polymorphism, Genetic (genetics), RNA, Ribosomal, 5S (genetics).
- MESH :
- chemical , genetics : DNA, Ribosomal, Genetic Markers, RNA, Ribosomal, 5S.
- genetics : Chromosomes, Plant, Microsatellite Repeats, Picea, Polymorphism, Genetic.
- physiology : Picea.
- Chromosome Mapping, Expressed Sequence Tags, Genome, Plant, Genomics, Karyotyping, Phenotype.
Abstract
Based on an F(1) progeny of 73 individuals, two parental maps were constructed according to the double pseudo-test cross strategy. The paternal map contained 16 linkage groups for a total genetic length of 1,792 cM. The maternal map covered 1,920 cM, and consisted of 12 linkage groups. These parental maps were then integrated using 66 intercross markers. The resulting consensus map covered 2,035 cM and included 755 markers (661 AFLPs, 74 SSRs, 18 ESTPs, the 5S rDNA and the early cone formation trait) on 12 linkage groups, reflecting the haploid number of chromosomes of Picea abies. The average spacing between two adjacent markers was 2.6 cM. The presence of 39 of the SSR and/or ESTP markers from this consensus map on other published maps of different Picea and Pinus species allowed us to establish partial linkage group homologies across three P. abies maps (up to five common markers per linkage group). This first saturated linkage map of P. abies could be therefore used as a support for developing comparative genome mapping in conifers.
DOI: 10.1007/s00122-004-1587-y
PubMed: 14991106
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Theoretische und angewandte Genetik</title><idno type="ISSN">0040-5752</idno><imprint><date when="2004" type="published">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Plant (genetics)</term><term>DNA, Ribosomal (genetics)</term><term>Expressed Sequence Tags (MeSH)</term><term>Genetic Markers (genetics)</term><term>Genome, Plant (MeSH)</term><term>Genomics (MeSH)</term><term>Karyotyping (MeSH)</term><term>Microsatellite Repeats (genetics)</term><term>Phenotype (MeSH)</term><term>Picea (genetics)</term><term>Picea (physiology)</term><term>Polymorphism, Genetic (genetics)</term><term>RNA, Ribosomal, 5S (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN ribosomique (génétique)</term><term>ARN ribosomique 5S (génétique)</term><term>Cartographie chromosomique (MeSH)</term><term>Caryotypage (MeSH)</term><term>Chromosomes de plante (génétique)</term><term>Génome végétal (MeSH)</term><term>Génomique (MeSH)</term><term>Marqueurs génétiques (génétique)</term><term>Phénotype (MeSH)</term><term>Picea (génétique)</term><term>Picea (physiologie)</term><term>Polymorphisme génétique (génétique)</term><term>Répétitions microsatellites (génétique)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Ribosomal</term><term>Genetic Markers</term><term>RNA, Ribosomal, 5S</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Microsatellite Repeats</term><term>Picea</term><term>Polymorphism, Genetic</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN ribosomique</term><term>ARN ribosomique 5S</term><term>Chromosomes de plante</term><term>Marqueurs génétiques</term><term>Picea</term><term>Polymorphisme génétique</term><term>Répétitions microsatellites</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Picea</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Picea</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Expressed Sequence Tags</term><term>Genome, Plant</term><term>Genomics</term><term>Karyotyping</term><term>Phenotype</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Caryotypage</term><term>Génome végétal</term><term>Génomique</term><term>Phénotype</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Based on an F(1) progeny of 73 individuals, two parental maps were constructed according to the double pseudo-test cross strategy. The paternal map contained 16 linkage groups for a total genetic length of 1,792 cM. The maternal map covered 1,920 cM, and consisted of 12 linkage groups. These parental maps were then integrated using 66 intercross markers. The resulting consensus map covered 2,035 cM and included 755 markers (661 AFLPs, 74 SSRs, 18 ESTPs, the 5S rDNA and the early cone formation trait) on 12 linkage groups, reflecting the haploid number of chromosomes of Picea abies. The average spacing between two adjacent markers was 2.6 cM. The presence of 39 of the SSR and/or ESTP markers from this consensus map on other published maps of different Picea and Pinus species allowed us to establish partial linkage group homologies across three P. abies maps (up to five common markers per linkage group). This first saturated linkage map of P. abies could be therefore used as a support for developing comparative genome mapping in conifers.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">14991106</PMID><DateCompleted><Year>2004</Year><Month>07</Month><Day>29</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0040-5752</ISSN><JournalIssue CitedMedium="Print"><Volume>108</Volume><Issue>8</Issue><PubDate><Year>2004</Year><Month>May</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers.</ArticleTitle><Pagination><MedlinePgn>1602-13</MedlinePgn></Pagination><Abstract><AbstractText>Based on an F(1) progeny of 73 individuals, two parental maps were constructed according to the double pseudo-test cross strategy. The paternal map contained 16 linkage groups for a total genetic length of 1,792 cM. The maternal map covered 1,920 cM, and consisted of 12 linkage groups. These parental maps were then integrated using 66 intercross markers. The resulting consensus map covered 2,035 cM and included 755 markers (661 AFLPs, 74 SSRs, 18 ESTPs, the 5S rDNA and the early cone formation trait) on 12 linkage groups, reflecting the haploid number of chromosomes of Picea abies. The average spacing between two adjacent markers was 2.6 cM. The presence of 39 of the SSR and/or ESTP markers from this consensus map on other published maps of different Picea and Pinus species allowed us to establish partial linkage group homologies across three P. abies maps (up to five common markers per linkage group). This first saturated linkage map of P. abies could be therefore used as a support for developing comparative genome mapping in conifers.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Acheré</LastName><ForeName>V</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>UMR INRA/UHP 1136, Tree-Microbe Interactions, Faculté des Sciences, Université Nancy I, BP 239, 54506 Vandoeuvre-lès-Nancy, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Faivre-Rampant</LastName><ForeName>P</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Jeandroz</LastName><ForeName>S</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Besnard</LastName><ForeName>G</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Markussen</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Aragones</LastName><ForeName>A</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Fladung</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Ritter</LastName><ForeName>E</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Favre</LastName><ForeName>J-M</ForeName><Initials>JM</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2004</Year><Month>02</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012341">RNA, Ribosomal, 5S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="Y">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="Y">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007621" MajorTopicYN="N">Karyotyping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D028222" MajorTopicYN="N">Picea</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="N">Polymorphism, Genetic</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012341" MajorTopicYN="N">RNA, Ribosomal, 5S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2003</Year><Month>06</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2003</Year><Month>12</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2004</Year><Month>3</Month><Day>3</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2004</Year><Month>7</Month><Day>30</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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Aragones</name><name sortKey="Besnard, G" sort="Besnard, G" uniqKey="Besnard G" first="G" last="Besnard">G. Besnard</name><name sortKey="Faivre Rampant, P" sort="Faivre Rampant, P" uniqKey="Faivre Rampant P" first="P" last="Faivre-Rampant">P. Faivre-Rampant</name><name sortKey="Favre, J M" sort="Favre, J M" uniqKey="Favre J" first="J-M" last="Favre">J-M Favre</name><name sortKey="Fladung, M" sort="Fladung, M" uniqKey="Fladung M" first="M" last="Fladung">M. Fladung</name><name sortKey="Jeandroz, S" sort="Jeandroz, S" uniqKey="Jeandroz S" first="S" last="Jeandroz">S. Jeandroz</name><name sortKey="Markussen, T" sort="Markussen, T" uniqKey="Markussen T" first="T" last="Markussen">T. Markussen</name><name sortKey="Ritter, E" sort="Ritter, E" uniqKey="Ritter E" first="E" last="Ritter">E. Ritter</name></noCountry><country name="France"><region name="Grand Est"><name sortKey="Achere, V" sort="Achere, V" uniqKey="Achere V" first="V" last="Acheré">V. 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