Genomic organization of molecular differentiation in Norway spruce (Picea abies).
Identifieur interne : 000277 ( Main/Exploration ); précédent : 000276; suivant : 000278Genomic organization of molecular differentiation in Norway spruce (Picea abies).
Auteurs : V. Acheré [France] ; J M Favre ; G. Besnard ; S. JeandrozSource :
- Molecular ecology [ 0962-1083 ] ; 2005.
Descripteurs français
- KwdFr :
- ADN des plantes (composition chimique), ADN des plantes (génétique), Cartographie chromosomique (MeSH), France (MeSH), Génome végétal (MeSH), Phylogenèse (MeSH), Picea (génétique), Polymorphisme de restriction (MeSH), Polymorphisme génétique (MeSH), Répétitions microsatellites (MeSH), Technique RAPD (MeSH), Variation génétique (MeSH), Écosystème (MeSH), Étiquettes de séquences exprimées (MeSH), Évolution moléculaire (MeSH).
- MESH :
- composition chimique : ADN des plantes.
- génétique : ADN des plantes, Picea.
- Cartographie chromosomique, France, Génome végétal, Phylogenèse, Polymorphisme de restriction, Polymorphisme génétique, Répétitions microsatellites, Technique RAPD, Variation génétique, Écosystème, Étiquettes de séquences exprimées, Évolution moléculaire.
- Wicri :
- geographic : France.
English descriptors
- KwdEn :
- Chromosome Mapping (MeSH), DNA, Plant (chemistry), DNA, Plant (genetics), Ecosystem (MeSH), Evolution, Molecular (MeSH), Expressed Sequence Tags (MeSH), France (MeSH), Genetic Variation (MeSH), Genome, Plant (MeSH), Microsatellite Repeats (MeSH), Phylogeny (MeSH), Picea (genetics), Polymorphism, Genetic (MeSH), Polymorphism, Restriction Fragment Length (MeSH), Random Amplified Polymorphic DNA Technique (MeSH).
- MESH :
- chemical , chemistry : DNA, Plant.
- chemical , genetics : DNA, Plant.
- geographic : France.
- genetics : Picea.
- Chromosome Mapping, Ecosystem, Evolution, Molecular, Expressed Sequence Tags, Genetic Variation, Genome, Plant, Microsatellite Repeats, Phylogeny, Polymorphism, Genetic, Polymorphism, Restriction Fragment Length, Random Amplified Polymorphic DNA Technique.
Abstract
Diversity and differentiation among three populations representing the geographical domains commonly recognized within the natural distribution area of Picea abies were analysed by using a set of 292 AFLP (amplified fragment length polymorphism), SSR (single sequence repeat) and ESTP (expressed sequence tags polymorphism) markers. As usually observed in forest trees, results showed high within-population diversity (H(S) reaching 0.79) and low among-population differentiation (G(ST) approximately 2%). The genomic organization of differentiation was then investigated on the basis of a subsample of 150 AFLP, SSR and ESTP mapped markers. The number of the loci differentiating the Baltico-Nordic from the central European populations (25 loci) and, within the central European populations, the Alpine from the Hercyno-Carpathian populations (12 loci), were different. These 37 differentiated loci, with individual G(ST) values ranging from 0.008 to 0.20, were evenly distributed on all linkage groups and mostly followed the neutral expectations, suggesting genome-wide effects on differentiation. Nine of them however behave as 'outlier' loci indicating possible locus-specific selective effects. Contribution of ongoing evolutionary forces and historical effects to the geographical differentiation of the species are discussed.
DOI: 10.1111/j.1365-294X.2005.02646.x
PubMed: 16101784
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genomic organization of molecular differentiation in Norway spruce (Picea abies).</title><author><name sortKey="Achere, V" sort="Achere, V" uniqKey="Achere V" first="V" last="Acheré">V. Acheré</name><affiliation wicri:level="3"><nlm:affiliation>UMR INRA/UHP 1136: Tree-microbe Interactions, Faculté des Sciences, Université Henri Poincaré-Nancy 1 BP 239, F-54506 Vandoeuvre-lès-Nancy, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR INRA/UHP 1136: Tree-microbe Interactions, Faculté des Sciences, Université Henri Poincaré-Nancy 1 BP 239, F-54506 Vandoeuvre-lès-Nancy</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Vandœuvre-lès-Nancy</settlement></placeName></affiliation></author><author><name sortKey="Favre, J M" sort="Favre, J M" uniqKey="Favre J" first="J M" last="Favre">J M Favre</name></author><author><name sortKey="Besnard, G" sort="Besnard, G" uniqKey="Besnard G" first="G" last="Besnard">G. Besnard</name></author><author><name sortKey="Jeandroz, S" sort="Jeandroz, S" uniqKey="Jeandroz S" first="S" last="Jeandroz">S. Jeandroz</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2005">2005</date><idno type="RBID">pubmed:16101784</idno><idno type="pmid">16101784</idno><idno type="doi">10.1111/j.1365-294X.2005.02646.x</idno><idno type="wicri:Area/Main/Corpus">000278</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000278</idno><idno type="wicri:Area/Main/Curation">000278</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000278</idno><idno type="wicri:Area/Main/Exploration">000278</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genomic organization of molecular differentiation in Norway spruce (Picea abies).</title><author><name sortKey="Achere, V" sort="Achere, V" uniqKey="Achere V" first="V" last="Acheré">V. Acheré</name><affiliation wicri:level="3"><nlm:affiliation>UMR INRA/UHP 1136: Tree-microbe Interactions, Faculté des Sciences, Université Henri Poincaré-Nancy 1 BP 239, F-54506 Vandoeuvre-lès-Nancy, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR INRA/UHP 1136: Tree-microbe Interactions, Faculté des Sciences, Université Henri Poincaré-Nancy 1 BP 239, F-54506 Vandoeuvre-lès-Nancy</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Vandœuvre-lès-Nancy</settlement></placeName></affiliation></author><author><name sortKey="Favre, J M" sort="Favre, J M" uniqKey="Favre J" first="J M" last="Favre">J M Favre</name></author><author><name sortKey="Besnard, G" sort="Besnard, G" uniqKey="Besnard G" first="G" last="Besnard">G. Besnard</name></author><author><name sortKey="Jeandroz, S" sort="Jeandroz, S" uniqKey="Jeandroz S" first="S" last="Jeandroz">S. Jeandroz</name></author></analytic><series><title level="j">Molecular ecology</title><idno type="ISSN">0962-1083</idno><imprint><date when="2005" type="published">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>DNA, Plant (chemistry)</term><term>DNA, Plant (genetics)</term><term>Ecosystem (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Expressed Sequence Tags (MeSH)</term><term>France (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>Phylogeny (MeSH)</term><term>Picea (genetics)</term><term>Polymorphism, Genetic (MeSH)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Random Amplified Polymorphic DNA Technique (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (composition chimique)</term><term>ADN des plantes (génétique)</term><term>Cartographie chromosomique (MeSH)</term><term>France (MeSH)</term><term>Génome végétal (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Picea (génétique)</term><term>Polymorphisme de restriction (MeSH)</term><term>Polymorphisme génétique (MeSH)</term><term>Répétitions microsatellites (MeSH)</term><term>Technique RAPD (MeSH)</term><term>Variation génétique (MeSH)</term><term>Écosystème (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>France</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN des plantes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Picea</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term><term>Picea</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Ecosystem</term><term>Evolution, Molecular</term><term>Expressed Sequence Tags</term><term>Genetic Variation</term><term>Genome, Plant</term><term>Microsatellite Repeats</term><term>Phylogeny</term><term>Polymorphism, Genetic</term><term>Polymorphism, Restriction Fragment Length</term><term>Random Amplified Polymorphic DNA Technique</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>France</term><term>Génome végétal</term><term>Phylogenèse</term><term>Polymorphisme de restriction</term><term>Polymorphisme génétique</term><term>Répétitions microsatellites</term><term>Technique RAPD</term><term>Variation génétique</term><term>Écosystème</term><term>Étiquettes de séquences exprimées</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>France</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Diversity and differentiation among three populations representing the geographical domains commonly recognized within the natural distribution area of Picea abies were analysed by using a set of 292 AFLP (amplified fragment length polymorphism), SSR (single sequence repeat) and ESTP (expressed sequence tags polymorphism) markers. As usually observed in forest trees, results showed high within-population diversity (H(S) reaching 0.79) and low among-population differentiation (G(ST) approximately 2%). The genomic organization of differentiation was then investigated on the basis of a subsample of 150 AFLP, SSR and ESTP mapped markers. The number of the loci differentiating the Baltico-Nordic from the central European populations (25 loci) and, within the central European populations, the Alpine from the Hercyno-Carpathian populations (12 loci), were different. These 37 differentiated loci, with individual G(ST) values ranging from 0.008 to 0.20, were evenly distributed on all linkage groups and mostly followed the neutral expectations, suggesting genome-wide effects on differentiation. Nine of them however behave as 'outlier' loci indicating possible locus-specific selective effects. Contribution of ongoing evolutionary forces and historical effects to the geographical differentiation of the species are discussed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16101784</PMID><DateCompleted><Year>2005</Year><Month>10</Month><Day>18</Day></DateCompleted><DateRevised><Year>2008</Year><Month>11</Month><Day>21</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0962-1083</ISSN><JournalIssue CitedMedium="Print"><Volume>14</Volume><Issue>10</Issue><PubDate><Year>2005</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Molecular ecology</Title><ISOAbbreviation>Mol Ecol</ISOAbbreviation></Journal><ArticleTitle>Genomic organization of molecular differentiation in Norway spruce (Picea abies).</ArticleTitle><Pagination><MedlinePgn>3191-201</MedlinePgn></Pagination><Abstract><AbstractText>Diversity and differentiation among three populations representing the geographical domains commonly recognized within the natural distribution area of Picea abies were analysed by using a set of 292 AFLP (amplified fragment length polymorphism), SSR (single sequence repeat) and ESTP (expressed sequence tags polymorphism) markers. As usually observed in forest trees, results showed high within-population diversity (H(S) reaching 0.79) and low among-population differentiation (G(ST) approximately 2%). The genomic organization of differentiation was then investigated on the basis of a subsample of 150 AFLP, SSR and ESTP mapped markers. The number of the loci differentiating the Baltico-Nordic from the central European populations (25 loci) and, within the central European populations, the Alpine from the Hercyno-Carpathian populations (12 loci), were different. These 37 differentiated loci, with individual G(ST) values ranging from 0.008 to 0.20, were evenly distributed on all linkage groups and mostly followed the neutral expectations, suggesting genome-wide effects on differentiation. Nine of them however behave as 'outlier' loci indicating possible locus-specific selective effects. Contribution of ongoing evolutionary forces and historical effects to the geographical differentiation of the species are discussed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Acheré</LastName><ForeName>V</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>UMR INRA/UHP 1136: Tree-microbe Interactions, Faculté des Sciences, Université Henri Poincaré-Nancy 1 BP 239, F-54506 Vandoeuvre-lès-Nancy, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Favre</LastName><ForeName>J M</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Besnard</LastName><ForeName>G</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Jeandroz</LastName><ForeName>S</ForeName><Initials>S</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Ecol</MedlineTA><NlmUniqueID>9214478</NlmUniqueID><ISSNLinking>0962-1083</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="N">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005602" MajorTopicYN="N" Type="Geographic">France</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D028222" MajorTopicYN="N">Picea</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="N">Polymorphism, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012150" MajorTopicYN="N">Polymorphism, Restriction Fragment Length</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019105" MajorTopicYN="N">Random Amplified Polymorphic DNA Technique</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2005</Year><Month>8</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>10</Month><Day>19</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2005</Year><Month>8</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">16101784</ArticleId><ArticleId IdType="pii">MEC2646</ArticleId><ArticleId IdType="doi">10.1111/j.1365-294X.2005.02646.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>France</li></country><region><li>Grand Est</li><li>Lorraine (région)</li></region><settlement><li>Vandœuvre-lès-Nancy</li></settlement></list><tree><noCountry><name sortKey="Besnard, G" sort="Besnard, G" uniqKey="Besnard G" first="G" last="Besnard">G. Besnard</name><name sortKey="Favre, J M" sort="Favre, J M" uniqKey="Favre J" first="J M" last="Favre">J M Favre</name><name sortKey="Jeandroz, S" sort="Jeandroz, S" uniqKey="Jeandroz S" first="S" last="Jeandroz">S. Jeandroz</name></noCountry><country name="France"><region name="Grand Est"><name sortKey="Achere, V" sort="Achere, V" uniqKey="Achere V" first="V" last="Acheré">V. Acheré</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/TreeMicInterV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000277 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000277 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= TreeMicInterV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:16101784
|texte= Genomic organization of molecular differentiation in Norway spruce (Picea abies).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:16101784" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a TreeMicInterV1
| This area was generated with Dilib version V0.6.37. |  |