Genome-wide analysis of plant metal transporters, with an emphasis on poplar.
Identifieur interne : 000245 ( Main/Exploration ); précédent : 000244; suivant : 000246Genome-wide analysis of plant metal transporters, with an emphasis on poplar.
Auteurs : Aude Migeon [France] ; Damien Blaudez ; Olivia Wilkins ; Barbara Montanini ; Malcolm M. Campbell ; Pierre Richaud ; Sébastien Thomine ; Michel ChalotSource :
- Cellular and molecular life sciences : CMLS [ 1420-9071 ] ; 2010.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Plantes, Populus, Protéines de transport, Protéines fongiques, Saccharomyces cerevisiae.
- métabolisme : Métaux.
- Génome végétal, Phylogenèse.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Carrier Proteins, Fungal Proteins.
- chemical , metabolism : Metals.
- genetics : Plants, Populus, Saccharomyces cerevisiae.
- Genome, Plant, Phylogeny.
Abstract
The specific transport of metal ions, mediated by membrane-localized metal transporters, is of fundamental importance in all eukaryotes. Genome-wide analysis of metal transporters was undertaken, making use of whole genome sequences of the green alga Chlamydomonas reinhardtii, the moss Physcomitrella patens, the lycophyte Selaginella moellendorffii, the monocots rice and sorghum, and the dicots Arabidopsis thaliana, poplar, grapevine, as well as of the yeast Saccharomyces cerevisiae. A repertoire of 430 metal transporters was found in total across eight photosynthetic plants, as well as in S. cerevisiae. Seventy-two full-length metal transporter genes were identified in the Populus genome alone, which is the largest number of metal transporters genes identified in any single species to date. Diversification of some transporter family gene clusters appears to have occurred in a lineage-specific manner. Expression analysis of Populus metal transporters indicates that some family members show tissue-specific transcript abundance. Taken together, the data provide a picture into the diversification of these important gene families.
DOI: 10.1007/s00018-010-0445-0
PubMed: 20623158
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Genome-wide analysis of metal transporters was undertaken, making use of whole genome sequences of the green alga Chlamydomonas reinhardtii, the moss Physcomitrella patens, the lycophyte Selaginella moellendorffii, the monocots rice and sorghum, and the dicots Arabidopsis thaliana, poplar, grapevine, as well as of the yeast Saccharomyces cerevisiae. A repertoire of 430 metal transporters was found in total across eight photosynthetic plants, as well as in S. cerevisiae. Seventy-two full-length metal transporter genes were identified in the Populus genome alone, which is the largest number of metal transporters genes identified in any single species to date. Diversification of some transporter family gene clusters appears to have occurred in a lineage-specific manner. Expression analysis of Populus metal transporters indicates that some family members show tissue-specific transcript abundance. Taken together, the data provide a picture into the diversification of these important gene families.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20623158</PMID><DateCompleted><Year>2010</Year><Month>11</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1420-9071</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>22</Issue><PubDate><Year>2010</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Cellular and molecular life sciences : CMLS</Title><ISOAbbreviation>Cell Mol Life Sci</ISOAbbreviation></Journal><ArticleTitle>Genome-wide analysis of plant metal transporters, with an emphasis on poplar.</ArticleTitle><Pagination><MedlinePgn>3763-84</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00018-010-0445-0</ELocationID><Abstract><AbstractText>The specific transport of metal ions, mediated by membrane-localized metal transporters, is of fundamental importance in all eukaryotes. Genome-wide analysis of metal transporters was undertaken, making use of whole genome sequences of the green alga Chlamydomonas reinhardtii, the moss Physcomitrella patens, the lycophyte Selaginella moellendorffii, the monocots rice and sorghum, and the dicots Arabidopsis thaliana, poplar, grapevine, as well as of the yeast Saccharomyces cerevisiae. A repertoire of 430 metal transporters was found in total across eight photosynthetic plants, as well as in S. cerevisiae. Seventy-two full-length metal transporter genes were identified in the Populus genome alone, which is the largest number of metal transporters genes identified in any single species to date. Diversification of some transporter family gene clusters appears to have occurred in a lineage-specific manner. Expression analysis of Populus metal transporters indicates that some family members show tissue-specific transcript abundance. 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ValidYN="Y"><LastName>Thomine</LastName><ForeName>Sébastien</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Chalot</LastName><ForeName>Michel</ForeName><Initials>M</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>07</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Cell Mol Life Sci</MedlineTA><NlmUniqueID>9705402</NlmUniqueID><ISSNLinking>1420-682X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D002352">Carrier Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal 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Campbell</name><name sortKey="Chalot, Michel" sort="Chalot, Michel" uniqKey="Chalot M" first="Michel" last="Chalot">Michel Chalot</name><name sortKey="Montanini, Barbara" sort="Montanini, Barbara" uniqKey="Montanini B" first="Barbara" last="Montanini">Barbara Montanini</name><name sortKey="Richaud, Pierre" sort="Richaud, Pierre" uniqKey="Richaud P" first="Pierre" last="Richaud">Pierre Richaud</name><name sortKey="Thomine, Sebastien" sort="Thomine, Sebastien" uniqKey="Thomine S" first="Sébastien" last="Thomine">Sébastien Thomine</name><name sortKey="Wilkins, Olivia" sort="Wilkins, Olivia" uniqKey="Wilkins O" first="Olivia" last="Wilkins">Olivia Wilkins</name></noCountry><country name="France"><region name="Grand Est"><name sortKey="Migeon, Aude" sort="Migeon, Aude" uniqKey="Migeon A" first="Aude" last="Migeon">Aude Migeon</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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