[Illumina Miseq sequencing-based fungal community of rhizosphere soils along root orders of poplar plantation].
Identifieur interne : 000124 ( Main/Exploration ); précédent : 000123; suivant : 000125[Illumina Miseq sequencing-based fungal community of rhizosphere soils along root orders of poplar plantation].
Auteurs : Qi Tong Wang [République populaire de Chine] ; Ming Yu Gao [République populaire de Chine] ; Meng Ling Liu [République populaire de Chine] ; Hua Tian Wang [République populaire de Chine] ; Yu Feng Dong [République populaire de Chine] ; Yan Ping Wang [République populaire de Chine]Source :
- Ying yong sheng tai xue bao = The journal of applied ecology [ 1001-9332 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Soil.
- Fungi, Plant Roots, Populus, Rhizosphere, Soil Microbiology.
Abstract
The study on microbial community composition in rhizosphere soils surrounding different order roots is of great significance for understanding the interactions between roots and microbes. Using Illumina Miseq sequencing technology, this study analyzed the differences of fungal community structure in bulk soils and rhizosphere soils surrounding different root orders of poplar (Populus × euramericana 'Neva') tree. The microbial species annotation showed that 128, 124, 130 and 101 fungal genera were classified in the rhizosphere soils around 1-2 order roots (R1), 3 order roots (R2), 4-5 order roots (R3) and in the bulk soils (NR), respectively. The differences of present fungal genera indicated a selectivity mechanism driving fungal community assembly in poplar rhizosphere soils. There were seven fungal genera with more than 1% of relative abundance in rhizosphere soils. Trichoderma was the dominant fungal genus in R1. Trichosporon and Aspergillus were the dominant fungal genera in R2 and R3, respectively. Alpha (α) diversity indices showed that the fungal diversity was significantly different among root orders. Specifically, the diversity of soil fungal community in the rhizosphere soils around lower order roots was significantly higher than that of higher order roots (P＜0.05). Beta (β) diversity indices showed that the dissimilarity of fungal community composition increased along with the root orders. All these results implied the different composition and structure of fungal community are closely related with the function of fine root orders.
DOI: 10.13287/j.1001-9332.201704.004
PubMed: 29741314
Affiliations:
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Agricultural University, Tai'an 271018, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Gao, Ming Yu" sort="Gao, Ming Yu" uniqKey="Gao M" first="Ming Yu" last="Gao">Ming Yu Gao</name><affiliation wicri:level="1"><nlm:affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Meng Ling" sort="Liu, Meng Ling" uniqKey="Liu M" first="Meng Ling" last="Liu">Meng Ling Liu</name><affiliation wicri:level="1"><nlm:affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Hua Tian" sort="Wang, Hua Tian" uniqKey="Wang H" first="Hua Tian" last="Wang">Hua Tian Wang</name><affiliation wicri:level="1"><nlm:affiliation>1Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China 2Taishan Forest Ecosystem Research Station of State Forestry Administration, Tai'an 271018, Shandong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China 2Taishan Forest Ecosystem Research Station of State Forestry Administration, Tai'an 271018, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Dong, Yu Feng" sort="Dong, Yu Feng" uniqKey="Dong Y" first="Yu Feng" last="Dong">Yu Feng Dong</name><affiliation wicri:level="1"><nlm:affiliation>Shandong Academy of Forestry, Ji'nan 250014, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shandong Academy of Forestry, Ji'nan 250014</wicri:regionArea><wicri:noRegion>Ji'nan 250014</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yan Ping" sort="Wang, Yan Ping" uniqKey="Wang Y" first="Yan Ping" last="Wang">Yan Ping Wang</name><affiliation wicri:level="1"><nlm:affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Taishan Forest Ecosystem Research Station of State Forestry Administration, Tai'an 271018, Shandong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Taishan Forest Ecosystem Research Station of State Forestry Administration, Tai'an 271018, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author></analytic><series><title level="j">Ying yong sheng tai xue bao = The journal of applied ecology</title><idno type="ISSN">1001-9332</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Fungi (MeSH)</term><term>Plant Roots (MeSH)</term><term>Populus (MeSH)</term><term>Rhizosphere (MeSH)</term><term>Soil (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Champignons (MeSH)</term><term>Microbiologie du sol (MeSH)</term><term>Populus (MeSH)</term><term>Racines de plante (MeSH)</term><term>Rhizosphère (MeSH)</term><term>Sol (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Fungi</term><term>Plant Roots</term><term>Populus</term><term>Rhizosphere</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Champignons</term><term>Microbiologie du sol</term><term>Populus</term><term>Racines de plante</term><term>Rhizosphère</term><term>Sol</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The study on microbial community composition in rhizosphere soils surrounding different order roots is of great significance for understanding the interactions between roots and microbes. Using Illumina Miseq sequencing technology, this study analyzed the differences of fungal community structure in bulk soils and rhizosphere soils surrounding different root orders of poplar (Populus × euramericana 'Neva') tree. The microbial species annotation showed that 128, 124, 130 and 101 fungal genera were classified in the rhizosphere soils around 1-2 order roots (R1), 3 order roots (R2), 4-5 order roots (R3) and in the bulk soils (NR), respectively. The differences of present fungal genera indicated a selectivity mechanism driving fungal community assembly in poplar rhizosphere soils. There were seven fungal genera with more than 1% of relative abundance in rhizosphere soils. Trichoderma was the dominant fungal genus in R1. Trichosporon and Aspergillus were the dominant fungal genera in R2 and R3, respectively. Alpha (α) diversity indices showed that the fungal diversity was significantly different among root orders. Specifically, the diversity of soil fungal community in the rhizosphere soils around lower order roots was significantly higher than that of higher order roots (P＜0.05). Beta (β) diversity indices showed that the dissimilarity of fungal community composition increased along with the root orders. All these results implied the different composition and structure of fungal community are closely related with the function of fine root orders.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">29741314</PMID><DateCompleted><Year>2018</Year><Month>06</Month><Day>15</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">1001-9332</ISSN><JournalIssue CitedMedium="Print"><Volume>28</Volume><Issue>4</Issue><PubDate><Year>2017</Year><Month>Apr</Month><Day>18</Day></PubDate></JournalIssue><Title>Ying yong sheng tai xue bao = The journal of applied ecology</Title><ISOAbbreviation>Ying Yong Sheng Tai Xue Bao</ISOAbbreviation></Journal><ArticleTitle>[Illumina Miseq sequencing-based fungal community of rhizosphere soils along root orders of poplar plantation].</ArticleTitle><Pagination><MedlinePgn>1177-1183</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.13287/j.1001-9332.201704.004</ELocationID><Abstract><AbstractText>The study on microbial community composition in rhizosphere soils surrounding different order roots is of great significance for understanding the interactions between roots and microbes. Using Illumina Miseq sequencing technology, this study analyzed the differences of fungal community structure in bulk soils and rhizosphere soils surrounding different root orders of poplar (Populus × euramericana 'Neva') tree. The microbial species annotation showed that 128, 124, 130 and 101 fungal genera were classified in the rhizosphere soils around 1-2 order roots (R1), 3 order roots (R2), 4-5 order roots (R3) and in the bulk soils (NR), respectively. The differences of present fungal genera indicated a selectivity mechanism driving fungal community assembly in poplar rhizosphere soils. There were seven fungal genera with more than 1% of relative abundance in rhizosphere soils. Trichoderma was the dominant fungal genus in R1. Trichosporon and Aspergillus were the dominant fungal genera in R2 and R3, respectively. Alpha (α) diversity indices showed that the fungal diversity was significantly different among root orders. Specifically, the diversity of soil fungal community in the rhizosphere soils around lower order roots was significantly higher than that of higher order roots (P＜0.05). Beta (β) diversity indices showed that the dissimilarity of fungal community composition increased along with the root orders. All these results implied the different composition and structure of fungal community are closely related with the function of fine root orders.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Qi Tong</ForeName><Initials>QT</Initials><AffiliationInfo><Affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Ming Yu</ForeName><Initials>MY</Initials><AffiliationInfo><Affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Meng Ling</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Hua Tian</ForeName><Initials>HT</Initials><AffiliationInfo><Affiliation>1Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China 2Taishan Forest Ecosystem Research Station of State Forestry Administration, Tai'an 271018, Shandong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dong</LastName><ForeName>Yu Feng</ForeName><Initials>YF</Initials><AffiliationInfo><Affiliation>Shandong Academy of Forestry, Ji'nan 250014, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yan Ping</ForeName><Initials>YP</Initials><AffiliationInfo><Affiliation>Forestry College of Shandong Agricultural University, Tai'an 271018, Shandong, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Taishan Forest Ecosystem Research Station of State Forestry Administration, Tai'an 271018, Shandong, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>chi</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><VernacularTitle>基于高通量测序的杨树人工林根际土壤真菌群落结构.</VernacularTitle></Article><MedlineJournalInfo><Country>China</Country><MedlineTA>Ying Yong Sheng Tai Xue Bao</MedlineTA><NlmUniqueID>9425159</NlmUniqueID><ISSNLinking>1001-9332</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="Y">Fungi</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList><OtherAbstract Type="Publisher" Language="chi"><AbstractText>研究不同根序细根根际土壤微生物群落组成结构对深入了解根系-微生物互作关系具有重要意义.本研究采用Illumina MiSeq测序平台,对杨树人工林非根际土壤和不同根序细根根际土壤的真菌群落结构进行分析.物种注释结果显示: 杨树1～2级根(R1)、3级根(R2)和4～5级(R3)根际及非根际土壤(NR)中分别包含128、124、130和101个真菌属,表明杨树根际存在对真菌群落构建的选择性机制.不同根序根际土壤中相对丰度>1%的真菌属有7个,木霉属在1～2级根根际土壤中丰度较高,毛孢子菌属和曲霉属分别是3级根和4～5级根根际土壤中丰度最高的真菌属.<i>α</i>多样性指数表明: 根际土壤真菌的多样性在不同根序间存在显著差异,低级根显著高于高级根(<i>P</i>＜0.05).<i>β</i>多样性指数表明: 真菌群落随着序级的升高差异性不断上升,相似性不断降低.不同根序细根根际真菌群落的趋异化组成和结构与细根功能具有密切关系.</AbstractText></OtherAbstract><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">fungal community</Keyword><Keyword MajorTopicYN="N">high-throughput sequencing</Keyword><Keyword MajorTopicYN="N">poplar plantation</Keyword><Keyword MajorTopicYN="N">rhizosphere soil</Keyword><Keyword MajorTopicYN="N">root orders</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>5</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>5</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>6</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29741314</ArticleId><ArticleId IdType="doi">10.13287/j.1001-9332.201704.004</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Qi Tong" sort="Wang, Qi Tong" uniqKey="Wang Q" first="Qi Tong" last="Wang">Qi Tong Wang</name></noRegion><name sortKey="Dong, Yu Feng" sort="Dong, Yu Feng" uniqKey="Dong Y" first="Yu Feng" last="Dong">Yu Feng Dong</name><name sortKey="Gao, Ming Yu" sort="Gao, Ming Yu" uniqKey="Gao M" first="Ming Yu" last="Gao">Ming Yu Gao</name><name sortKey="Liu, Meng Ling" sort="Liu, Meng Ling" uniqKey="Liu M" first="Meng Ling" last="Liu">Meng Ling Liu</name><name sortKey="Wang, Hua Tian" sort="Wang, Hua Tian" uniqKey="Wang H" first="Hua Tian" last="Wang">Hua Tian Wang</name><name sortKey="Wang, Yan Ping" sort="Wang, Yan Ping" uniqKey="Wang Y" first="Yan Ping" last="Wang">Yan Ping Wang</name><name sortKey="Wang, Yan Ping" sort="Wang, Yan Ping" uniqKey="Wang Y" first="Yan Ping" last="Wang">Yan Ping Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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