RustFungiGenomicsV1, Main, Exploration, bibRecord, 000570

Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.

Identifieur interne : 000570 ( Main/Exploration ); précédent : 000569; suivant : 000571

Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.

Auteurs : Marta Bencke-Malato ; Caroline Cabreira ; Beatriz Wiebke-Strohm ; Lauro Bücker-Neto ; Estefania Mancini ; Marina B. Osorio ; Milena S. Homrich ; Andreia Carina Turchetto-Zolet ; Mayra C C G. De Carvalho ; Renata Stolf ; Ricardo L M. Weber ; Gast N Westergaard ; Atílio P. Castagnaro ; Ricardo V. Abdelnoor ; Francismar C. Marcelino-Guimarães ; Márcia Margis-Pinheiro ; Maria Helena Bodanese-Zanettini

Source :

BMC plant biology [ 1471-2229 ] ; 2014.

RBID : pubmed:25201117

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Basidiomycota (physiology), Consensus Sequence (MeSH), Disease Susceptibility (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Gene Silencing (MeSH), Genome, Plant (genetics), Host-Pathogen Interactions (MeSH), Molecular Sequence Annotation (MeSH), Molecular Sequence Data (MeSH), Plant Diseases (immunology), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (immunology), Plant Leaves (microbiology), Plant Leaves (physiology), Plant Proteins (genetics), Plant Proteins (metabolism), Plants, Genetically Modified (MeSH), Regeneration (MeSH), Sequence Alignment (MeSH), Soybeans (genetics), Soybeans (immunology), Soybeans (microbiology), Soybeans (physiology), Transcription Factors (genetics), Transcription Factors (metabolism), Transformation, Genetic (MeSH).
MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Genome, Plant, Plant Leaves, Soybeans.
- immunology : Plant Diseases, Plant Leaves, Soybeans.
- chemical , metabolism : Plant Proteins, Transcription Factors.
- microbiology : Plant Diseases, Plant Leaves, Soybeans.
- physiology : Basidiomycota, Plant Leaves, Soybeans.
- Amino Acid Sequence, Consensus Sequence, Disease Susceptibility, Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Silencing, Host-Pathogen Interactions, Molecular Sequence Annotation, Molecular Sequence Data, Plants, Genetically Modified, Regeneration, Sequence Alignment, Transformation, Genetic.

Abstract

BACKGROUND

Many previous studies have shown that soybean WRKY transcription factors are involved in the plant response to biotic and abiotic stresses. Phakopsora pachyrhizi is the causal agent of Asian Soybean Rust, one of the most important soybean diseases. There are evidences that WRKYs are involved in the resistance of some soybean genotypes against that fungus. The number of WRKY genes already annotated in soybean genome was underrepresented. In the present study, a genome-wide annotation of the soybean WRKY family was carried out and members involved in the response to P. pachyrhizi were identified.

RESULTS

As a result of a soybean genomic databases search, 182 WRKY-encoding genes were annotated and 33 putative pseudogenes identified. Genes involved in the response to P. pachyrhizi infection were identified using superSAGE, RNA-Seq of microdissected lesions and microarray experiments. Seventy-five genes were differentially expressed during fungal infection. The expression of eight WRKY genes was validated by RT-qPCR. The expression of these genes in a resistant genotype was earlier and/or stronger compared with a susceptible genotype in response to P. pachyrhizi infection. Soybean somatic embryos were transformed in order to overexpress or silence WRKY genes. Embryos overexpressing a WRKY gene were obtained, but they were unable to convert into plants. When infected with P. pachyrhizi, the leaves of the silenced transgenic line showed a higher number of lesions than the wild-type plants.

CONCLUSIONS

The present study reports a genome-wide annotation of soybean WRKY family. The participation of some members in response to P. pachyrhizi infection was demonstrated. The results contribute to the elucidation of gene function and suggest the manipulation of WRKYs as a strategy to increase fungal resistance in soybean plants.

DOI: 10.1186/s12870-014-0236-0
PubMed: 25201117
PubMed Central: PMC4172953

Affiliations:

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Le document en format XML

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<author><name sortKey="Bencke Malato, Marta" sort="Bencke Malato, Marta" uniqKey="Bencke Malato M" first="Marta" last="Bencke-Malato">Marta Bencke-Malato</name>
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<author><name sortKey="Cabreira, Caroline" sort="Cabreira, Caroline" uniqKey="Cabreira C" first="Caroline" last="Cabreira">Caroline Cabreira</name>
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<author><name sortKey="Margis Pinheiro, Marcia" sort="Margis Pinheiro, Marcia" uniqKey="Margis Pinheiro M" first="Márcia" last="Margis-Pinheiro">Márcia Margis-Pinheiro</name>
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<term>Basidiomycota (physiology)</term>
<term>Consensus Sequence (MeSH)</term>
<term>Disease Susceptibility (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Gene Silencing (MeSH)</term>
<term>Genome, Plant (genetics)</term>
<term>Host-Pathogen Interactions (MeSH)</term>
<term>Molecular Sequence Annotation (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Plant Diseases (immunology)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (immunology)</term>
<term>Plant Leaves (microbiology)</term>
<term>Plant Leaves (physiology)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plants, Genetically Modified (MeSH)</term>
<term>Regeneration (MeSH)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Soybeans (genetics)</term>
<term>Soybeans (immunology)</term>
<term>Soybeans (microbiology)</term>
<term>Soybeans (physiology)</term>
<term>Transcription Factors (genetics)</term>
<term>Transcription Factors (metabolism)</term>
<term>Transformation, Genetic (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences (MeSH)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Annotation de séquence moléculaire (MeSH)</term>
<term>Basidiomycota (physiologie)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Extinction de l'expression des gènes (MeSH)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (immunologie)</term>
<term>Feuilles de plante (microbiologie)</term>
<term>Feuilles de plante (physiologie)</term>
<term>Génome végétal (génétique)</term>
<term>Interactions hôte-pathogène (MeSH)</term>
<term>Maladies des plantes (immunologie)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Prédisposition aux maladies (MeSH)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Régénération (MeSH)</term>
<term>Soja (génétique)</term>
<term>Soja (immunologie)</term>
<term>Soja (microbiologie)</term>
<term>Soja (physiologie)</term>
<term>Séquence consensus (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Transformation génétique (MeSH)</term>
<term>Végétaux génétiquement modifiés (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term>
<term>Transcription Factors</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Plant</term>
<term>Plant Leaves</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Facteurs de transcription</term>
<term>Feuilles de plante</term>
<term>Génome végétal</term>
<term>Protéines végétales</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Feuilles de plante</term>
<term>Maladies des plantes</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Plant Diseases</term>
<term>Plant Leaves</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term>
<term>Transcription Factors</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term>
<term>Maladies des plantes</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Plant Leaves</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Facteurs de transcription</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Basidiomycota</term>
<term>Feuilles de plante</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Basidiomycota</term>
<term>Plant Leaves</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Consensus Sequence</term>
<term>Disease Susceptibility</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Silencing</term>
<term>Host-Pathogen Interactions</term>
<term>Molecular Sequence Annotation</term>
<term>Molecular Sequence Data</term>
<term>Plants, Genetically Modified</term>
<term>Regeneration</term>
<term>Sequence Alignment</term>
<term>Transformation, Genetic</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Analyse de profil d'expression de gènes</term>
<term>Annotation de séquence moléculaire</term>
<term>Données de séquences moléculaires</term>
<term>Extinction de l'expression des gènes</term>
<term>Interactions hôte-pathogène</term>
<term>Prédisposition aux maladies</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Régénération</term>
<term>Séquence consensus</term>
<term>Séquence d'acides aminés</term>
<term>Transformation génétique</term>
<term>Végétaux génétiquement modifiés</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Many previous studies have shown that soybean WRKY transcription factors are involved in the plant response to biotic and abiotic stresses. Phakopsora pachyrhizi is the causal agent of Asian Soybean Rust, one of the most important soybean diseases. There are evidences that WRKYs are involved in the resistance of some soybean genotypes against that fungus. The number of WRKY genes already annotated in soybean genome was underrepresented. In the present study, a genome-wide annotation of the soybean WRKY family was carried out and members involved in the response to P. pachyrhizi were identified.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>As a result of a soybean genomic databases search, 182 WRKY-encoding genes were annotated and 33 putative pseudogenes identified. Genes involved in the response to P. pachyrhizi infection were identified using superSAGE, RNA-Seq of microdissected lesions and microarray experiments. Seventy-five genes were differentially expressed during fungal infection. The expression of eight WRKY genes was validated by RT-qPCR. The expression of these genes in a resistant genotype was earlier and/or stronger compared with a susceptible genotype in response to P. pachyrhizi infection. Soybean somatic embryos were transformed in order to overexpress or silence WRKY genes. Embryos overexpressing a WRKY gene were obtained, but they were unable to convert into plants. When infected with P. pachyrhizi, the leaves of the silenced transgenic line showed a higher number of lesions than the wild-type plants.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>The present study reports a genome-wide annotation of soybean WRKY family. The participation of some members in response to P. pachyrhizi infection was demonstrated. The results contribute to the elucidation of gene function and suggest the manipulation of WRKYs as a strategy to increase fungal resistance in soybean plants.</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25201117</PMID>
<DateCompleted><Year>2015</Year>
<Month>11</Month>
<Day>02</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>14</Volume>
<PubDate><Year>2014</Year>
<Month>Sep</Month>
<Day>10</Day>
</PubDate>
</JournalIssue>
<Title>BMC plant biology</Title>
<ISOAbbreviation>BMC Plant Biol</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.</ArticleTitle>
<Pagination><MedlinePgn>236</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/s12870-014-0236-0</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Many previous studies have shown that soybean WRKY transcription factors are involved in the plant response to biotic and abiotic stresses. Phakopsora pachyrhizi is the causal agent of Asian Soybean Rust, one of the most important soybean diseases. There are evidences that WRKYs are involved in the resistance of some soybean genotypes against that fungus. The number of WRKY genes already annotated in soybean genome was underrepresented. In the present study, a genome-wide annotation of the soybean WRKY family was carried out and members involved in the response to P. pachyrhizi were identified.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">As a result of a soybean genomic databases search, 182 WRKY-encoding genes were annotated and 33 putative pseudogenes identified. Genes involved in the response to P. pachyrhizi infection were identified using superSAGE, RNA-Seq of microdissected lesions and microarray experiments. Seventy-five genes were differentially expressed during fungal infection. The expression of eight WRKY genes was validated by RT-qPCR. The expression of these genes in a resistant genotype was earlier and/or stronger compared with a susceptible genotype in response to P. pachyrhizi infection. Soybean somatic embryos were transformed in order to overexpress or silence WRKY genes. Embryos overexpressing a WRKY gene were obtained, but they were unable to convert into plants. When infected with P. pachyrhizi, the leaves of the silenced transgenic line showed a higher number of lesions than the wild-type plants.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The present study reports a genome-wide annotation of soybean WRKY family. The participation of some members in response to P. pachyrhizi infection was demonstrated. The results contribute to the elucidation of gene function and suggest the manipulation of WRKYs as a strategy to increase fungal resistance in soybean plants.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bencke-Malato</LastName>
<ForeName>Marta</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Cabreira</LastName>
<ForeName>Caroline</ForeName>
<Initials>C</Initials>
</Author>
<Author ValidYN="Y"><LastName>Wiebke-Strohm</LastName>
<ForeName>Beatriz</ForeName>
<Initials>B</Initials>
</Author>
<Author ValidYN="Y"><LastName>Bücker-Neto</LastName>
<ForeName>Lauro</ForeName>
<Initials>L</Initials>
</Author>
<Author ValidYN="Y"><LastName>Mancini</LastName>
<ForeName>Estefania</ForeName>
<Initials>E</Initials>
</Author>
<Author ValidYN="Y"><LastName>Osorio</LastName>
<ForeName>Marina B</ForeName>
<Initials>MB</Initials>
</Author>
<Author ValidYN="Y"><LastName>Homrich</LastName>
<ForeName>Milena S</ForeName>
<Initials>MS</Initials>
</Author>
<Author ValidYN="Y"><LastName>Turchetto-Zolet</LastName>
<ForeName>Andreia Carina</ForeName>
<Initials>AC</Initials>
</Author>
<Author ValidYN="Y"><LastName>De Carvalho</LastName>
<ForeName>Mayra C C G</ForeName>
<Initials>MC</Initials>
</Author>
<Author ValidYN="Y"><LastName>Stolf</LastName>
<ForeName>Renata</ForeName>
<Initials>R</Initials>
</Author>
<Author ValidYN="Y"><LastName>Weber</LastName>
<ForeName>Ricardo L M</ForeName>
<Initials>RL</Initials>
</Author>
<Author ValidYN="Y"><LastName>Westergaard</LastName>
<ForeName>Gastón</ForeName>
<Initials>G</Initials>
</Author>
<Author ValidYN="Y"><LastName>Castagnaro</LastName>
<ForeName>Atílio P</ForeName>
<Initials>AP</Initials>
</Author>
<Author ValidYN="Y"><LastName>Abdelnoor</LastName>
<ForeName>Ricardo V</ForeName>
<Initials>RV</Initials>
</Author>
<Author ValidYN="Y"><LastName>Marcelino-Guimarães</LastName>
<ForeName>Francismar C</ForeName>
<Initials>FC</Initials>
</Author>
<Author ValidYN="Y"><LastName>Margis-Pinheiro</LastName>
<ForeName>Márcia</ForeName>
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   |texte=   Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.
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Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.

Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.

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