A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f.sp. fusiforme.
Identifieur interne : 000798 ( Main/Curation ); précédent : 000797; suivant : 000799A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f.sp. fusiforme.
Auteurs : Thomas L. Kubisiak [États-Unis] ; Claire L. Anderson ; Henry V. Amerson ; Jason A. Smith ; John M. Davis ; C Dana NelsonSource :
- Fungal genetics and biology : FG & B [ 1096-0937 ] ; 2011.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Basidiomycota.
- isolement et purification : Basidiomycota.
- microbiologie : Pinus taeda.
- pathogénicité : Basidiomycota.
- Cartographie chromosomique, Croisements génétiques, Gènes fongiques, Génome fongique, Virulence.
English descriptors
- KwdEn :
- MESH :
- genetics : Basidiomycota.
- isolation & purification : Basidiomycota.
- microbiology : Pinus taeda.
- pathogenicity : Basidiomycota.
- Chromosome Mapping, Crosses, Genetic, Genes, Fungal, Genome, Fungal, Virulence.
Abstract
A novel approach is presented to map avirulence gene Avr1 in the basidiomycete Cronartium quercuum f.sp. fusiforme, the causal agent of fusiform rust disease in pines. DNA markers tightly linked to resistance gene Fr1 in loblolly pine tree 10-5 were used to classify 10-5 seedling progeny as either resistant or susceptible. A single dikaryotic isolate (P2) heterozygous at the corresponding Avr1 gene was developed by crossing Fr1 avirulent isolate SC20-21 with Fr1 virulent isolate NC2-40. Bulk basidiospore inoculum derived from isolate P2 was used to challenge the pine progeny. The ability to unambiguously marker classify 10-5 progeny as resistant (selecting for virulence) or susceptible (non-selecting) permitted the genetic mapping of the corresponding Avr1 gene by bulked segregant analysis. Using this approach, 14 genetic markers significantly linked to Avr1 were identified and placed within the context of a genome-wide linkage map produced for isolate P2 using samples from susceptible seedlings.
DOI: 10.1016/j.fgb.2010.09.008
PubMed: 20888926
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Anderson</name></author><author><name sortKey="Amerson, Henry V" sort="Amerson, Henry V" uniqKey="Amerson H" first="Henry V" last="Amerson">Henry V. Amerson</name></author><author><name sortKey="Smith, Jason A" sort="Smith, Jason A" uniqKey="Smith J" first="Jason A" last="Smith">Jason A. Smith</name></author><author><name sortKey="Davis, John M" sort="Davis, John M" uniqKey="Davis J" first="John M" last="Davis">John M. 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Kubisiak</name><affiliation wicri:level="1"><nlm:affiliation>USDA Forest Service, Southern Research Station, Southern Institute of Forest Genetics, U.S. Department of Agriculture, 23332 Success Road, Saucier, MS 39574, USA. tkubisiak@fs.fed.us</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA Forest Service, Southern Research Station, Southern Institute of Forest Genetics, U.S. Department of Agriculture, 23332 Success Road, Saucier, MS 39574</wicri:regionArea></affiliation></author><author><name sortKey="Anderson, Claire L" sort="Anderson, Claire L" uniqKey="Anderson C" first="Claire L" last="Anderson">Claire L. Anderson</name></author><author><name sortKey="Amerson, Henry V" sort="Amerson, Henry V" uniqKey="Amerson H" first="Henry V" last="Amerson">Henry V. Amerson</name></author><author><name sortKey="Smith, Jason A" sort="Smith, Jason A" uniqKey="Smith J" first="Jason A" last="Smith">Jason A. 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Davis</name></author><author><name sortKey="Nelson, C Dana" sort="Nelson, C Dana" uniqKey="Nelson C" first="C Dana" last="Nelson">C Dana Nelson</name></author></analytic><series><title level="j">Fungal genetics and biology : FG & B</title><idno type="eISSN">1096-0937</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (genetics)</term><term>Basidiomycota (isolation & purification)</term><term>Basidiomycota (pathogenicity)</term><term>Chromosome Mapping (MeSH)</term><term>Crosses, Genetic (MeSH)</term><term>Genes, Fungal (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Pinus taeda (microbiology)</term><term>Virulence (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Basidiomycota (génétique)</term><term>Basidiomycota (isolement et purification)</term><term>Basidiomycota (pathogénicité)</term><term>Cartographie chromosomique (MeSH)</term><term>Croisements génétiques (MeSH)</term><term>Gènes fongiques (MeSH)</term><term>Génome fongique (MeSH)</term><term>Pinus taeda (microbiologie)</term><term>Virulence (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Pinus taeda</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Pinus taeda</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Crosses, Genetic</term><term>Genes, Fungal</term><term>Genome, Fungal</term><term>Virulence</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Croisements génétiques</term><term>Gènes fongiques</term><term>Génome fongique</term><term>Virulence</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A novel approach is presented to map avirulence gene Avr1 in the basidiomycete Cronartium quercuum f.sp. fusiforme, the causal agent of fusiform rust disease in pines. DNA markers tightly linked to resistance gene Fr1 in loblolly pine tree 10-5 were used to classify 10-5 seedling progeny as either resistant or susceptible. A single dikaryotic isolate (P2) heterozygous at the corresponding Avr1 gene was developed by crossing Fr1 avirulent isolate SC20-21 with Fr1 virulent isolate NC2-40. Bulk basidiospore inoculum derived from isolate P2 was used to challenge the pine progeny. The ability to unambiguously marker classify 10-5 progeny as resistant (selecting for virulence) or susceptible (non-selecting) permitted the genetic mapping of the corresponding Avr1 gene by bulked segregant analysis. Using this approach, 14 genetic markers significantly linked to Avr1 were identified and placed within the context of a genome-wide linkage map produced for isolate P2 using samples from susceptible seedlings.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20888926</PMID><DateCompleted><Year>2011</Year><Month>04</Month><Day>27</Day></DateCompleted><DateRevised><Year>2011</Year><Month>01</Month><Day>24</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1096-0937</ISSN><JournalIssue CitedMedium="Internet"><Volume>48</Volume><Issue>3</Issue><PubDate><Year>2011</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Fungal genetics and biology : FG & B</Title><ISOAbbreviation>Fungal Genet Biol</ISOAbbreviation></Journal><ArticleTitle>A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f.sp. fusiforme.</ArticleTitle><Pagination><MedlinePgn>266-74</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.fgb.2010.09.008</ELocationID><Abstract><AbstractText>A novel approach is presented to map avirulence gene Avr1 in the basidiomycete Cronartium quercuum f.sp. fusiforme, the causal agent of fusiform rust disease in pines. DNA markers tightly linked to resistance gene Fr1 in loblolly pine tree 10-5 were used to classify 10-5 seedling progeny as either resistant or susceptible. A single dikaryotic isolate (P2) heterozygous at the corresponding Avr1 gene was developed by crossing Fr1 avirulent isolate SC20-21 with Fr1 virulent isolate NC2-40. Bulk basidiospore inoculum derived from isolate P2 was used to challenge the pine progeny. The ability to unambiguously marker classify 10-5 progeny as resistant (selecting for virulence) or susceptible (non-selecting) permitted the genetic mapping of the corresponding Avr1 gene by bulked segregant analysis. Using this approach, 14 genetic markers significantly linked to Avr1 were identified and placed within the context of a genome-wide linkage map produced for isolate P2 using samples from susceptible seedlings.</AbstractText><CopyrightInformation>Published by Elsevier Inc.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kubisiak</LastName><ForeName>Thomas L</ForeName><Initials>TL</Initials><AffiliationInfo><Affiliation>USDA Forest Service, Southern Research Station, Southern Institute of Forest Genetics, U.S. Department of Agriculture, 23332 Success Road, Saucier, MS 39574, USA. tkubisiak@fs.fed.us</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Anderson</LastName><ForeName>Claire L</ForeName><Initials>CL</Initials></Author><Author ValidYN="Y"><LastName>Amerson</LastName><ForeName>Henry V</ForeName><Initials>HV</Initials></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>Jason A</ForeName><Initials>JA</Initials></Author><Author ValidYN="Y"><LastName>Davis</LastName><ForeName>John M</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Nelson</LastName><ForeName>C Dana</ForeName><Initials>CD</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>10</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Fungal Genet Biol</MedlineTA><NlmUniqueID>9607601</NlmUniqueID><ISSNLinking>1087-1845</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="Y">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003433" MajorTopicYN="N">Crosses, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005800" MajorTopicYN="Y">Genes, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="Y">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D041603" MajorTopicYN="N">Pinus taeda</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014774" MajorTopicYN="N">Virulence</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2010</Year><Month>06</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2010</Year><Month>09</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2010</Year><Month>09</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>10</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>10</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>4</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20888926</ArticleId><ArticleId IdType="pii">S1087-1845(10)00185-4</ArticleId><ArticleId IdType="doi">10.1016/j.fgb.2010.09.008</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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