Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing.
Identifieur interne : 000113 ( Main/Exploration ); précédent : 000112; suivant : 000114Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing.
Auteurs : Diana P. Garnica [Australie] ; Narayana M. Upadhyaya ; Peter N. Dodds ; John P. RathjenSource :
- PloS one [ 1932-6203 ] ; 2013.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Basidiomycota (cytologie), Basidiomycota (génétique), Basidiomycota (métabolisme), Basidiomycota (pathogénicité), Cycle cellulaire (génétique), Maladies des plantes (microbiologie), Protéines de transport membranaire (génétique), Réplication de l'ADN (génétique), Triticum (microbiologie), Virulence (génétique).
- MESH :
- cytologie : Basidiomycota.
- génétique : Basidiomycota, Cycle cellulaire, Protéines de transport membranaire, Réplication de l'ADN, Virulence.
- microbiologie : Maladies des plantes, Triticum.
- métabolisme : Basidiomycota.
- pathogénicité : Basidiomycota.
- Analyse de profil d'expression de gènes.
English descriptors
- KwdEn :
- Basidiomycota (cytology), Basidiomycota (genetics), Basidiomycota (metabolism), Basidiomycota (pathogenicity), Cell Cycle (genetics), DNA Replication (genetics), Gene Expression Profiling (MeSH), Membrane Transport Proteins (genetics), Plant Diseases (microbiology), Triticum (microbiology), Virulence (genetics).
- MESH :
- chemical , genetics : Membrane Transport Proteins.
- cytology : Basidiomycota.
- genetics : Basidiomycota, Cell Cycle, DNA Replication, Virulence.
- metabolism : Basidiomycota.
- microbiology : Plant Diseases, Triticum.
- pathogenicity : Basidiomycota.
- Gene Expression Profiling.
Abstract
Stripe rust caused by the fungus Puccinia striiformis f.sp. tritici (Pst) is a major constraint to wheat production worldwide. The molecular events that underlie Pst pathogenicity are largely unknown. Like all rusts, Pst creates a specialized cellular structure within host cells called the haustorium to obtain nutrients from wheat, and to secrete pathogenicity factors called effector proteins. We purified Pst haustoria and used next-generation sequencing platforms to assemble the haustorial transcriptome as well as the transcriptome of germinated spores. 12,282 transcripts were assembled from 454-pyrosequencing data and used as reference for digital gene expression analysis to compare the germinated uredinospores and haustoria transcriptomes based on Illumina RNAseq data. More than 400 genes encoding secreted proteins which constitute candidate effectors were identified from the haustorial transcriptome, with two thirds of these up-regulated in this tissue compared to germinated spores. RT-PCR analysis confirmed the expression patterns of 94 effector candidates. The analysis also revealed that spores rely mainly on stored energy reserves for growth and development, while haustoria take up host nutrients for massive energy production for biosynthetic pathways and the ultimate production of spores. Together, these studies substantially increase our knowledge of potential Pst effectors and provide new insights into the pathogenic strategies of this important organism.
DOI: 10.1371/journal.pone.0067150
PubMed: 23840606
PubMed Central: PMC3694141
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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The molecular events that underlie Pst pathogenicity are largely unknown. Like all rusts, Pst creates a specialized cellular structure within host cells called the haustorium to obtain nutrients from wheat, and to secrete pathogenicity factors called effector proteins. We purified Pst haustoria and used next-generation sequencing platforms to assemble the haustorial transcriptome as well as the transcriptome of germinated spores. 12,282 transcripts were assembled from 454-pyrosequencing data and used as reference for digital gene expression analysis to compare the germinated uredinospores and haustoria transcriptomes based on Illumina RNAseq data. More than 400 genes encoding secreted proteins which constitute candidate effectors were identified from the haustorial transcriptome, with two thirds of these up-regulated in this tissue compared to germinated spores. RT-PCR analysis confirmed the expression patterns of 94 effector candidates. The analysis also revealed that spores rely mainly on stored energy reserves for growth and development, while haustoria take up host nutrients for massive energy production for biosynthetic pathways and the ultimate production of spores. Together, these studies substantially increase our knowledge of potential Pst effectors and provide new insights into the pathogenic strategies of this important organism.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23840606</PMID><DateCompleted><Year>2017</Year><Month>10</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-Print"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>6</Issue><PubDate><Year>2013</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing.</ArticleTitle><Pagination><MedlinePgn>e67150</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0067150</ELocationID><Abstract><AbstractText>Stripe rust caused by the fungus Puccinia striiformis f.sp. tritici (Pst) is a major constraint to wheat production worldwide. The molecular events that underlie Pst pathogenicity are largely unknown. Like all rusts, Pst creates a specialized cellular structure within host cells called the haustorium to obtain nutrients from wheat, and to secrete pathogenicity factors called effector proteins. We purified Pst haustoria and used next-generation sequencing platforms to assemble the haustorial transcriptome as well as the transcriptome of germinated spores. 12,282 transcripts were assembled from 454-pyrosequencing data and used as reference for digital gene expression analysis to compare the germinated uredinospores and haustoria transcriptomes based on Illumina RNAseq data. More than 400 genes encoding secreted proteins which constitute candidate effectors were identified from the haustorial transcriptome, with two thirds of these up-regulated in this tissue compared to germinated spores. RT-PCR analysis confirmed the expression patterns of 94 effector candidates. The analysis also revealed that spores rely mainly on stored energy reserves for growth and development, while haustoria take up host nutrients for massive energy production for biosynthetic pathways and the ultimate production of spores. Together, these studies substantially increase our knowledge of potential Pst effectors and provide new insights into the pathogenic strategies of this important organism.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Garnica</LastName><ForeName>Diana P</ForeName><Initials>DP</Initials><AffiliationInfo><Affiliation>Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Upadhyaya</LastName><ForeName>Narayana M</ForeName><Initials>NM</Initials></Author><Author ValidYN="Y"><LastName>Dodds</LastName><ForeName>Peter N</ForeName><Initials>PN</Initials></Author><Author ValidYN="Y"><LastName>Rathjen</LastName><ForeName>John P</ForeName><Initials>JP</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, 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sortKey="Dodds, Peter N" sort="Dodds, Peter N" uniqKey="Dodds P" first="Peter N" last="Dodds">Peter N. 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