Identification and molecular characterization of a trans-acting small interfering RNA producing locus regulating leaf rust responsive gene expression in wheat (Triticum aestivum L.).
Identifieur interne : 000066 ( Main/Exploration ); précédent : 000065; suivant : 000067Identification and molecular characterization of a trans-acting small interfering RNA producing locus regulating leaf rust responsive gene expression in wheat (Triticum aestivum L.).
Auteurs : Summi Dutta [Inde] ; Dhananjay Kumar [Inde] ; Shailendra Jha [Inde] ; Kumble Vinod Prabhu [Inde] ; Manish Kumar [Inde] ; Kunal Mukhopadhyay [Inde]Source :
- Planta [ 1432-2048 ] ; 2017.
Descripteurs français
- KwdFr :
- ARN des plantes (génétique), Banque de gènes (MeSH), Basidiomycota (physiologie), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Interactions hôte-pathogène (MeSH), Maladies des plantes (microbiologie), Petit ARN interférent (génétique), Régulation de l'expression des gènes végétaux (MeSH), Triticum (génétique), Triticum (microbiologie), microARN (génétique).
- MESH :
- génétique : ARN des plantes, Feuilles de plante, Petit ARN interférent, Triticum, microARN.
- microbiologie : Feuilles de plante, Maladies des plantes, Triticum.
- physiologie : Basidiomycota.
- Banque de gènes, Interactions hôte-pathogène, Régulation de l'expression des gènes végétaux.
English descriptors
- KwdEn :
- Basidiomycota (physiology), Gene Expression Regulation, Plant (MeSH), Gene Library (MeSH), Host-Pathogen Interactions (MeSH), MicroRNAs (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (microbiology), RNA, Plant (genetics), RNA, Small Interfering (genetics), Triticum (genetics), Triticum (microbiology).
- MESH :
- chemical , genetics : MicroRNAs, RNA, Plant, RNA, Small Interfering.
- genetics : Plant Leaves, Triticum.
- microbiology : Plant Diseases, Plant Leaves, Triticum.
- physiology : Basidiomycota.
- Gene Expression Regulation, Plant, Gene Library, Host-Pathogen Interactions.
Abstract
MAIN CONCLUSION
A novel leaf rust responsive ta-siRNA-producing locus was identified in wheat showing similarity to 28S rRNA and generated four differentially expressing ta-siRNAs by phasing which targeted stress responsive genes. Trans-acting-small interfering RNAs (Ta-siRNAs) are plant specific molecules generally involved in development and are also stress responsive. Ta-siRNAs identified in wheat till date are all responsive to abiotic stress only. Wheat cultivation is severely affected by rusts and leaf rust particularly affects grain filling. This study reports a novel ta-siRNA producing locus (TAS) in wheat which is a segment of 28S ribosomal RNA but shows differential expression during leaf rust infestation. Four small RNA libraries prepared from wheat Near Isogenic Lines were treated with leaf rust pathogen and compared with untreated controls. A TAS with the ability to generate four ta-siRNAs by phasing events was identified along with the microRNA TamiR16 as the phase initiator. The targets of the ta-siRNAs included α-gliadin, leucine rich repeat, trans-membrane proteins, glutathione-S-transferase, and fatty acid desaturase among others, which are either stress responsive genes or are essential for normal growth and development of plants. Expression of the TAS, its generated ta-siRNAs, and their target genes were profiled at five different time points after pathogen inoculation of susceptible and resistant wheat isolines and compared with mock-inoculated controls. Comparative analysis of expression unveiled differential and reciprocal relationship as well as discrete patterns between susceptible and resistant isolines. The expression profiles of the target genes of the identified ta-siRNAs advocate more towards effector triggered susceptibility favouring pathogenesis. The study helps in discerning the functions of wheat genes regulated by ta-siRNAs in response to leaf rust.
DOI: 10.1007/s00425-017-2744-2
PubMed: 28710588
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<imprint><date when="2017" type="published">2017</date>
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<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Gene Library (MeSH)</term>
<term>Host-Pathogen Interactions (MeSH)</term>
<term>MicroRNAs (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (microbiology)</term>
<term>RNA, Plant (genetics)</term>
<term>RNA, Small Interfering (genetics)</term>
<term>Triticum (genetics)</term>
<term>Triticum (microbiology)</term>
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<term>Banque de gènes (MeSH)</term>
<term>Basidiomycota (physiologie)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (microbiologie)</term>
<term>Interactions hôte-pathogène (MeSH)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Petit ARN interférent (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Triticum (génétique)</term>
<term>Triticum (microbiologie)</term>
<term>microARN (génétique)</term>
</keywords>
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<term>RNA, Plant</term>
<term>RNA, Small Interfering</term>
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<front><div type="abstract" xml:lang="en"><p><b>MAIN CONCLUSION</b>
</p>
<p>A novel leaf rust responsive ta-siRNA-producing locus was identified in wheat showing similarity to 28S rRNA and generated four differentially expressing ta-siRNAs by phasing which targeted stress responsive genes. Trans-acting-small interfering RNAs (Ta-siRNAs) are plant specific molecules generally involved in development and are also stress responsive. Ta-siRNAs identified in wheat till date are all responsive to abiotic stress only. Wheat cultivation is severely affected by rusts and leaf rust particularly affects grain filling. This study reports a novel ta-siRNA producing locus (TAS) in wheat which is a segment of 28S ribosomal RNA but shows differential expression during leaf rust infestation. Four small RNA libraries prepared from wheat Near Isogenic Lines were treated with leaf rust pathogen and compared with untreated controls. A TAS with the ability to generate four ta-siRNAs by phasing events was identified along with the microRNA TamiR16 as the phase initiator. The targets of the ta-siRNAs included α-gliadin, leucine rich repeat, trans-membrane proteins, glutathione-S-transferase, and fatty acid desaturase among others, which are either stress responsive genes or are essential for normal growth and development of plants. Expression of the TAS, its generated ta-siRNAs, and their target genes were profiled at five different time points after pathogen inoculation of susceptible and resistant wheat isolines and compared with mock-inoculated controls. Comparative analysis of expression unveiled differential and reciprocal relationship as well as discrete patterns between susceptible and resistant isolines. The expression profiles of the target genes of the identified ta-siRNAs advocate more towards effector triggered susceptibility favouring pathogenesis. The study helps in discerning the functions of wheat genes regulated by ta-siRNAs in response to leaf rust.</p>
</div>
</front>
</TEI>
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<Month>06</Month>
<Day>04</Day>
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<Month>11</Month>
<Day>13</Day>
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<Issue>5</Issue>
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<Month>Nov</Month>
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<Title>Planta</Title>
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<ArticleTitle>Identification and molecular characterization of a trans-acting small interfering RNA producing locus regulating leaf rust responsive gene expression in wheat (Triticum aestivum L.).</ArticleTitle>
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<Abstract><AbstractText Label="MAIN CONCLUSION" NlmCategory="UNASSIGNED">A novel leaf rust responsive ta-siRNA-producing locus was identified in wheat showing similarity to 28S rRNA and generated four differentially expressing ta-siRNAs by phasing which targeted stress responsive genes. Trans-acting-small interfering RNAs (Ta-siRNAs) are plant specific molecules generally involved in development and are also stress responsive. Ta-siRNAs identified in wheat till date are all responsive to abiotic stress only. Wheat cultivation is severely affected by rusts and leaf rust particularly affects grain filling. This study reports a novel ta-siRNA producing locus (TAS) in wheat which is a segment of 28S ribosomal RNA but shows differential expression during leaf rust infestation. Four small RNA libraries prepared from wheat Near Isogenic Lines were treated with leaf rust pathogen and compared with untreated controls. A TAS with the ability to generate four ta-siRNAs by phasing events was identified along with the microRNA TamiR16 as the phase initiator. The targets of the ta-siRNAs included α-gliadin, leucine rich repeat, trans-membrane proteins, glutathione-S-transferase, and fatty acid desaturase among others, which are either stress responsive genes or are essential for normal growth and development of plants. Expression of the TAS, its generated ta-siRNAs, and their target genes were profiled at five different time points after pathogen inoculation of susceptible and resistant wheat isolines and compared with mock-inoculated controls. Comparative analysis of expression unveiled differential and reciprocal relationship as well as discrete patterns between susceptible and resistant isolines. The expression profiles of the target genes of the identified ta-siRNAs advocate more towards effector triggered susceptibility favouring pathogenesis. The study helps in discerning the functions of wheat genes regulated by ta-siRNAs in response to leaf rust.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Dutta</LastName>
<ForeName>Summi</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Department of Bio-Engineering, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, 835215, India.</Affiliation>
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<Author ValidYN="Y"><LastName>Kumar</LastName>
<ForeName>Dhananjay</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Department of Bio-Engineering, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, 835215, India.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Botany, PDM University, Bahadurgarh, Haryana, 124507, India.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Jha</LastName>
<ForeName>Shailendra</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Division of Genetics, Indian Agricultural Research Institute, New Delhi, 110012, India.</Affiliation>
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<AffiliationInfo><Affiliation>Department of Bio-Engineering, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, 835215, India. kmukhopadhyay@bitmesra.ac.in.</Affiliation>
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<Keyword MajorTopicYN="N">Leaf rust</Keyword>
<Keyword MajorTopicYN="N">Puccinia triticina</Keyword>
<Keyword MajorTopicYN="N">Stem-loop qRT-PCR</Keyword>
<Keyword MajorTopicYN="N">TAS</Keyword>
<Keyword MajorTopicYN="N">Ta-siRNA</Keyword>
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