Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus.
Identifieur interne : 002307 ( Main/Exploration ); précédent : 002306; suivant : 002308Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus.
Auteurs : Peng Xu ; Yimeng Kong ; Dongliang Song ; Cheng Huang ; Xuan Li ; Laigeng Li [République populaire de Chine]Source :
- BMC genomics [ 1471-2164 ] ; 2014.
Descripteurs français
- KwdFr :
- ARN des plantes (analyse), ARN messager (analyse), Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ARN (MeSH), Bois (génétique), Bois (métabolisme), Eucalyptus (génétique), Populus (génétique), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (MeSH), Épissage alternatif (MeSH), Évolution moléculaire (MeSH).
- MESH :
- analyse : ARN des plantes, ARN messager.
- génétique : Bois, Eucalyptus, Populus, Protéines végétales.
- métabolisme : Bois.
- Analyse de profil d'expression de gènes, Analyse de séquence d'ARN, Régulation de l'expression des gènes végétaux, Épissage alternatif, Évolution moléculaire.
English descriptors
- KwdEn :
- Alternative Splicing (MeSH), Eucalyptus (genetics), Evolution, Molecular (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Plant Proteins (genetics), Populus (genetics), RNA, Messenger (analysis), RNA, Plant (analysis), Sequence Analysis, RNA (MeSH), Wood (genetics), Wood (metabolism).
- MESH :
- chemical , analysis : RNA, Messenger, RNA, Plant.
- chemical , genetics : Plant Proteins.
- genetics : Eucalyptus, Populus, Wood.
- metabolism : Wood.
- Alternative Splicing, Evolution, Molecular, Gene Expression Profiling, Gene Expression Regulation, Plant, Sequence Analysis, RNA.
Abstract
BACKGROUND
Wood formation in tree species is regulated by multiple factors at various layers. Alternative splicing (AS) occurs within a large number of genes in wood formation. However, the functional implications and conservation of the AS occurrence are not well understood.
RESULTS
In this study, we profiled AS events in wood-forming tissues of Populus and Eucalyptus, and analyzed their functional implications as well as inter-species conservation. 28.3% and 20.7% of highly expressed transcripts in the developing xylem of Populus and Eucalyptus respectively were affected by AS events. Around 42% of the AS events resulted in changes to the original reading frame. 25.0% (in Populus) and 26.8% (in Eucalyptus) of the AS events may cause protein domain modification. In the process of wood formation, about 28% of AS-occurring genes were putative orthologs and 71 conserved AS events were identified in the two species.
CONCLUSION
Through analysis of AS events in developing xylem of two tree species, this study reveals an array of new information regarding AS occurrence and function in tree development.
DOI: 10.1186/1471-2164-15-780
PubMed: 25209012
PubMed Central: PMC4287496
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Wood formation in tree species is regulated by multiple factors at various layers. Alternative splicing (AS) occurs within a large number of genes in wood formation. However, the functional implications and conservation of the AS occurrence are not well understood.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>In this study, we profiled AS events in wood-forming tissues of Populus and Eucalyptus, and analyzed their functional implications as well as inter-species conservation. 28.3% and 20.7% of highly expressed transcripts in the developing xylem of Populus and Eucalyptus respectively were affected by AS events. Around 42% of the AS events resulted in changes to the original reading frame. 25.0% (in Populus) and 26.8% (in Eucalyptus) of the AS events may cause protein domain modification. In the process of wood formation, about 28% of AS-occurring genes were putative orthologs and 71 conserved AS events were identified in the two species.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSION</b>
</p>
<p>Through analysis of AS events in developing xylem of two tree species, this study reveals an array of new information regarding AS occurrence and function in tree development.</p>
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<AbstractText Label="RESULTS" NlmCategory="RESULTS">In this study, we profiled AS events in wood-forming tissues of Populus and Eucalyptus, and analyzed their functional implications as well as inter-species conservation. 28.3% and 20.7% of highly expressed transcripts in the developing xylem of Populus and Eucalyptus respectively were affected by AS events. Around 42% of the AS events resulted in changes to the original reading frame. 25.0% (in Populus) and 26.8% (in Eucalyptus) of the AS events may cause protein domain modification. In the process of wood formation, about 28% of AS-occurring genes were putative orthologs and 71 conserved AS events were identified in the two species.</AbstractText>
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