Genome-wide analysis of SINA family in plants and their phylogenetic relationships.
Identifieur interne : 003909 ( Main/Exploration ); précédent : 003908; suivant : 003910Genome-wide analysis of SINA family in plants and their phylogenetic relationships.
Auteurs : Meng Wang [République populaire de Chine] ; Ying Jin ; Junjie Fu ; Yun Zhu ; Jun Zheng ; Jian Hu ; Guoying WangSource :
- DNA sequence : the journal of DNA sequencing and mapping [ 1042-5179 ] ; 2008.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Analyse de profil d'expression de gènes (MeSH), Chromosomes de plante (génétique), Données de séquences moléculaires (MeSH), Gènes de plante (génétique), Génome végétal (génétique), Magnoliopsida (génétique), Motifs d'acides aminés (génétique), Ordre des gènes (MeSH), Phylogenèse (MeSH), Protéines végétales (composition chimique), Protéines végétales (génétique), RT-PCR (MeSH), Structure tertiaire des protéines (génétique), Séquence conservée (génétique), Séquence d'acides aminés (MeSH).
- MESH :
- composition chimique : Protéines végétales.
- génétique : Chromosomes de plante, Gènes de plante, Génome végétal, Magnoliopsida, Motifs d'acides aminés, Protéines végétales, Structure tertiaire des protéines, Séquence conservée.
- Alignement de séquences, Analyse de profil d'expression de gènes, Données de séquences moléculaires, Ordre des gènes, Phylogenèse, RT-PCR, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Motifs (genetics), Amino Acid Sequence (MeSH), Chromosomes, Plant (genetics), Conserved Sequence (genetics), Gene Expression Profiling (MeSH), Gene Order (MeSH), Genes, Plant (genetics), Genome, Plant (genetics), Magnoliopsida (genetics), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Protein Structure, Tertiary (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Sequence Alignment (MeSH).
- MESH :
- chemical , chemistry : Plant Proteins.
- genetics : Amino Acid Motifs, Chromosomes, Plant, Conserved Sequence, Genes, Plant, Genome, Plant, Magnoliopsida, Plant Proteins, Protein Structure, Tertiary.
- Amino Acid Sequence, Gene Expression Profiling, Gene Order, Molecular Sequence Data, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment.
Abstract
SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.
DOI: 10.1080/10425170701517317
PubMed: 17852340
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<author><name sortKey="Zheng, Jun" sort="Zheng, Jun" uniqKey="Zheng J" first="Jun" last="Zheng">Jun Zheng</name>
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<term>Conserved Sequence (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Order (MeSH)</term>
<term>Genes, Plant (genetics)</term>
<term>Genome, Plant (genetics)</term>
<term>Magnoliopsida (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Protein Structure, Tertiary (genetics)</term>
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<term>Sequence Alignment (MeSH)</term>
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<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes de plante (génétique)</term>
<term>Génome végétal (génétique)</term>
<term>Magnoliopsida (génétique)</term>
<term>Motifs d'acides aminés (génétique)</term>
<term>Ordre des gènes (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>RT-PCR (MeSH)</term>
<term>Structure tertiaire des protéines (génétique)</term>
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<term>Séquence d'acides aminés (MeSH)</term>
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<term>Sequence Alignment</term>
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<term>Analyse de profil d'expression de gènes</term>
<term>Données de séquences moléculaires</term>
<term>Ordre des gènes</term>
<term>Phylogenèse</term>
<term>RT-PCR</term>
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<front><div type="abstract" xml:lang="en">SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.</div>
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<Abstract><AbstractText>SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.</AbstractText>
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