The evolution of nuclear auxin signalling.
Identifieur interne : 003456 ( Main/Exploration ); précédent : 003455; suivant : 003457The evolution of nuclear auxin signalling.
Auteurs : Ivan A. Paponov [Allemagne] ; William Teale ; Daniel Lang ; Martina Paponov ; Ralf Reski ; Stefan A. Rensing ; Klaus PalmeSource :
- BMC evolutionary biology [ 1471-2148 ] ; 2009.
Descripteurs français
- KwdFr :
- ADN des plantes (génétique), Acides indolacétiques (métabolisme), Alignement de séquences (MeSH), Analyse de séquence d'ADN (MeSH), Arabidopsis (génétique), Bryopsida (génétique), Facteur de croissance végétal (métabolisme), Gènes de plante (MeSH), Génome végétal (MeSH), Hybridation génomique comparative (MeSH), Phylogenèse (MeSH), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (MeSH), Selaginellaceae (génétique), Transactivateurs (génétique), Évolution moléculaire (MeSH).
- MESH :
- génétique : ADN des plantes, Arabidopsis, Bryopsida, Protéines végétales, Selaginellaceae, Transactivateurs.
- métabolisme : Acides indolacétiques, Facteur de croissance végétal.
- Alignement de séquences, Analyse de séquence d'ADN, Gènes de plante, Génome végétal, Hybridation génomique comparative, Phylogenèse, Régulation de l'expression des gènes végétaux, Évolution moléculaire.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Bryopsida (genetics), Comparative Genomic Hybridization (MeSH), DNA, Plant (genetics), Evolution, Molecular (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genome, Plant (MeSH), Indoleacetic Acids (metabolism), Phylogeny (MeSH), Plant Growth Regulators (metabolism), Plant Proteins (genetics), Selaginellaceae (genetics), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Trans-Activators (genetics).
- MESH :
- chemical , genetics : DNA, Plant, Plant Proteins, Trans-Activators.
- genetics : Arabidopsis, Bryopsida, Selaginellaceae.
- chemical , metabolism : Indoleacetic Acids, Plant Growth Regulators.
- Comparative Genomic Hybridization, Evolution, Molecular, Gene Expression Regulation, Plant, Genes, Plant, Genome, Plant, Phylogeny, Sequence Alignment, Sequence Analysis, DNA.
Abstract
BACKGROUND
The plant hormone auxin directs many aspects of plant growth and development. To understand the evolution of auxin signalling, we compared the genes encoding two families of crucial transcriptional regulators, AUXIN RESPONSE FACTOR (ARF) and AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA), among flowering plants and two non-seed plants, Physcomitrella patens and Selaginella moellendorffii.
RESULTS
Comparative analysis of the P. patens, S. moellendorffii and Arabidopsis thaliana genomes suggests that the well-established rapid transcriptional response to auxin of flowering plants, evolved in vascular plants after their divergence from the last common ancestor shared with mosses. An N-terminally truncated ARF transcriptional activator is encoded by the genomes of P. patens and S. moellendorffii, and suggests a supplementary mechanism of nuclear auxin signalling, absent in flowering plants. Site-specific analyses of positive Darwinian selection revealed relatively high rates of synonymous substitution in the A. thaliana ARFs of classes IIa (and their closest orthologous genes in poplar) and Ib, suggesting that neofunctionalization in important functional regions has driven the evolution of auxin signalling in flowering plants. Primary auxin responsive gene families (GH3, SAUR, LBD) show different phylogenetic profiles in P. patens, S. moellendorffii and flowering plants, highlighting genes for further study.
CONCLUSION
The genome of P. patens encodes all of the basic components necessary for a rapid auxin response. The spatial separation of the Q-rich activator domain and DNA-binding domain suggests an alternative mechanism of transcriptional control in P. patens distinct from the mechanism seen in flowering plants. Significantly, the genome of S. moellendorffii is predicted to encode proteins suitable for both methods of regulation.
DOI: 10.1186/1471-2148-9-126
PubMed: 19493348
PubMed Central: PMC2708152
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Paponov</name><affiliation wicri:level="3"><nlm:affiliation>Botany, Faculty of Biology, University of Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany. ivan.paponov@biologie.uni-freiburg.de</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Botany, Faculty of Biology, University of Freiburg, Schänzlestrasse 1, 79104 Freiburg</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Fribourg-en-Brisgau</region><settlement type="city">Fribourg-en-Brisgau</settlement></placeName></affiliation></author><author><name sortKey="Teale, William" sort="Teale, William" uniqKey="Teale W" first="William" last="Teale">William Teale</name></author><author><name sortKey="Lang, Daniel" sort="Lang, Daniel" uniqKey="Lang D" first="Daniel" last="Lang">Daniel Lang</name></author><author><name sortKey="Paponov, Martina" sort="Paponov, Martina" uniqKey="Paponov M" first="Martina" last="Paponov">Martina Paponov</name></author><author><name sortKey="Reski, Ralf" sort="Reski, Ralf" uniqKey="Reski R" first="Ralf" last="Reski">Ralf Reski</name></author><author><name sortKey="Rensing, Stefan A" sort="Rensing, Stefan A" uniqKey="Rensing S" first="Stefan A" last="Rensing">Stefan A. 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To understand the evolution of auxin signalling, we compared the genes encoding two families of crucial transcriptional regulators, AUXIN RESPONSE FACTOR (ARF) and AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA), among flowering plants and two non-seed plants, Physcomitrella patens and Selaginella moellendorffii.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Comparative analysis of the P. patens, S. moellendorffii and Arabidopsis thaliana genomes suggests that the well-established rapid transcriptional response to auxin of flowering plants, evolved in vascular plants after their divergence from the last common ancestor shared with mosses. An N-terminally truncated ARF transcriptional activator is encoded by the genomes of P. patens and S. moellendorffii, and suggests a supplementary mechanism of nuclear auxin signalling, absent in flowering plants. Site-specific analyses of positive Darwinian selection revealed relatively high rates of synonymous substitution in the A. thaliana ARFs of classes IIa (and their closest orthologous genes in poplar) and Ib, suggesting that neofunctionalization in important functional regions has driven the evolution of auxin signalling in flowering plants. Primary auxin responsive gene families (GH3, SAUR, LBD) show different phylogenetic profiles in P. patens, S. moellendorffii and flowering plants, highlighting genes for further study.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>The genome of P. patens encodes all of the basic components necessary for a rapid auxin response. The spatial separation of the Q-rich activator domain and DNA-binding domain suggests an alternative mechanism of transcriptional control in P. patens distinct from the mechanism seen in flowering plants. Significantly, the genome of S. moellendorffii is predicted to encode proteins suitable for both methods of regulation.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19493348</PMID><DateCompleted><Year>2009</Year><Month>07</Month><Day>27</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2148</ISSN><JournalIssue CitedMedium="Internet"><Volume>9</Volume><PubDate><Year>2009</Year><Month>Jun</Month><Day>03</Day></PubDate></JournalIssue><Title>BMC evolutionary biology</Title><ISOAbbreviation>BMC Evol Biol</ISOAbbreviation></Journal><ArticleTitle>The evolution of nuclear auxin signalling.</ArticleTitle><Pagination><MedlinePgn>126</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2148-9-126</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The plant hormone auxin directs many aspects of plant growth and development. To understand the evolution of auxin signalling, we compared the genes encoding two families of crucial transcriptional regulators, AUXIN RESPONSE FACTOR (ARF) and AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA), among flowering plants and two non-seed plants, Physcomitrella patens and Selaginella moellendorffii.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Comparative analysis of the P. patens, S. moellendorffii and Arabidopsis thaliana genomes suggests that the well-established rapid transcriptional response to auxin of flowering plants, evolved in vascular plants after their divergence from the last common ancestor shared with mosses. An N-terminally truncated ARF transcriptional activator is encoded by the genomes of P. patens and S. moellendorffii, and suggests a supplementary mechanism of nuclear auxin signalling, absent in flowering plants. Site-specific analyses of positive Darwinian selection revealed relatively high rates of synonymous substitution in the A. thaliana ARFs of classes IIa (and their closest orthologous genes in poplar) and Ib, suggesting that neofunctionalization in important functional regions has driven the evolution of auxin signalling in flowering plants. Primary auxin responsive gene families (GH3, SAUR, LBD) show different phylogenetic profiles in P. patens, S. moellendorffii and flowering plants, highlighting genes for further study.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">The genome of P. patens encodes all of the basic components necessary for a rapid auxin response. The spatial separation of the Q-rich activator domain and DNA-binding domain suggests an alternative mechanism of transcriptional control in P. patens distinct from the mechanism seen in flowering plants. Significantly, the genome of S. moellendorffii is predicted to encode proteins suitable for both methods of regulation.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Paponov</LastName><ForeName>Ivan A</ForeName><Initials>IA</Initials><AffiliationInfo><Affiliation>Botany, Faculty of Biology, University of Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany. ivan.paponov@biologie.uni-freiburg.de</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Teale</LastName><ForeName>William</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Lang</LastName><ForeName>Daniel</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Paponov</LastName><ForeName>Martina</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Reski</LastName><ForeName>Ralf</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Rensing</LastName><ForeName>Stefan 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Fribourg-en-Brisgau</li></region><settlement><li>Fribourg-en-Brisgau</li></settlement></list><tree><noCountry><name sortKey="Lang, Daniel" sort="Lang, Daniel" uniqKey="Lang D" first="Daniel" last="Lang">Daniel Lang</name><name sortKey="Palme, Klaus" sort="Palme, Klaus" uniqKey="Palme K" first="Klaus" last="Palme">Klaus Palme</name><name sortKey="Paponov, Martina" sort="Paponov, Martina" uniqKey="Paponov M" first="Martina" last="Paponov">Martina Paponov</name><name sortKey="Rensing, Stefan A" sort="Rensing, Stefan A" uniqKey="Rensing S" first="Stefan A" last="Rensing">Stefan A. Rensing</name><name sortKey="Reski, Ralf" sort="Reski, Ralf" uniqKey="Reski R" first="Ralf" last="Reski">Ralf Reski</name><name sortKey="Teale, William" sort="Teale, William" uniqKey="Teale W" first="William" last="Teale">William Teale</name></noCountry><country name="Allemagne"><region name="Bade-Wurtemberg"><name sortKey="Paponov, Ivan A" sort="Paponov, Ivan A" uniqKey="Paponov I" first="Ivan A" last="Paponov">Ivan A. Paponov</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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