PoplarV1, Main, Exploration, bibRecord, 002A64

Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula.

Identifieur interne : 002A64 ( Main/Exploration ); précédent : 002A63; suivant : 002A65

Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula.

Auteurs : Fangming Wang [République populaire de Chine] ; Qing Dong ; Haiyang Jiang ; Suwen Zhu ; Beijiu Chen ; Yan Xiang

Source :

Molecular biology reports [ 1573-4978 ] ; 2012.

RBID : pubmed:21625849

Descripteurs français

English descriptors

KwdEn :
- Chromosome Mapping (MeSH), Cluster Analysis (MeSH), Computational Biology (MeSH), Conserved Sequence (genetics), DNA-Binding Proteins (genetics), DNA-Binding Proteins (metabolism), Heat Shock Transcription Factors (MeSH), Medicago truncatula (genetics), Phylogeny (MeSH), Populus (genetics), Protein Structure, Tertiary (MeSH), Real-Time Polymerase Chain Reaction (MeSH), Species Specificity (MeSH), Transcription Factors (genetics), Transcription Factors (metabolism).
MESH :
- chemical , genetics : DNA-Binding Proteins, Transcription Factors.
- genetics : Conserved Sequence, Medicago truncatula, Populus.
- chemical , metabolism : DNA-Binding Proteins, Transcription Factors.
- Chromosome Mapping, Cluster Analysis, Computational Biology, Heat Shock Transcription Factors, Phylogeny, Protein Structure, Tertiary, Real-Time Polymerase Chain Reaction, Species Specificity.

Abstract

Research has provided substantial evidences that heat shock proteins (HSPs) play essential roles in extreme physiological conditions. Heat shock transcription factors (HSFs) are important HSPs regulators, but their functions are poorly understood, particularly in Populus and Medicago. In this study, a comprehensive bioinformatics analysis of the HSFs was performed in Populus trichocarpa and Medicago truncatula. Twenty-eight Populus HSFs and 16 Medicago HSFs were identified, and comparative analyzes of the two plants were carried out subsequently. HSFs were divided into three different classes and they were diverse and complicated transcription factors. The results of semi-quantitative RT-PCR in Populus suggested six genes (PtHSF-03, PtHSF-13, PtHSF-15, PtHSF-21, PtHSF-22 and PtHSF-23) were markedly increased by heat stress. The results presented here provide an important clue for cloning, expression and functional studies of the HSFs in Populus and Medicago.

DOI: 10.1007/s11033-011-0933-9
PubMed: 21625849

Affiliations:

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<term>Heat Shock Transcription Factors (MeSH)</term>
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<term>Protein Structure, Tertiary (MeSH)</term>
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<term>Facteurs de transcription (métabolisme)</term>
<term>Facteurs de transcription de choc thermique (MeSH)</term>
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<term>Protéines de liaison à l'ADN (génétique)</term>
<term>Protéines de liaison à l'ADN (métabolisme)</term>
<term>Réaction de polymérisation en chaine en temps réel (MeSH)</term>
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<front><div type="abstract" xml:lang="en">Research has provided substantial evidences that heat shock proteins (HSPs) play essential roles in extreme physiological conditions. Heat shock transcription factors (HSFs) are important HSPs regulators, but their functions are poorly understood, particularly in Populus and Medicago. In this study, a comprehensive bioinformatics analysis of the HSFs was performed in Populus trichocarpa and Medicago truncatula. Twenty-eight Populus HSFs and 16 Medicago HSFs were identified, and comparative analyzes of the two plants were carried out subsequently. HSFs were divided into three different classes and they were diverse and complicated transcription factors. The results of semi-quantitative RT-PCR in Populus suggested six genes (PtHSF-03, PtHSF-13, PtHSF-15, PtHSF-21, PtHSF-22 and PtHSF-23) were markedly increased by heat stress. The results presented here provide an important clue for cloning, expression and functional studies of the HSFs in Populus and Medicago.</div>
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<ArticleIdList><ArticleId IdType="pubmed">7984417</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genes Dev. 1991 Oct;5(10):1902-11</Citation>
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<affiliations><list><country><li>République populaire de Chine</li>
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<name sortKey="Dong, Qing" sort="Dong, Qing" uniqKey="Dong Q" first="Qing" last="Dong">Qing Dong</name>
<name sortKey="Jiang, Haiyang" sort="Jiang, Haiyang" uniqKey="Jiang H" first="Haiyang" last="Jiang">Haiyang Jiang</name>
<name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name>
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<country name="République populaire de Chine"><region name="Anhui"><name sortKey="Wang, Fangming" sort="Wang, Fangming" uniqKey="Wang F" first="Fangming" last="Wang">Fangming Wang</name>
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   |texte=   Genome-wide analysis of the heat shock transcription factors in Populus                      trichocarpa and Medicago                      truncatula.
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Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula.

Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula.

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