PoplarV1, Main, Exploration, bibRecord, 002A36

Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress.

Identifieur interne : 002A36 ( Main/Exploration ); précédent : 002A35; suivant : 002A37

Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress.

Auteurs : Yuanyuan Ren [République populaire de Chine] ; Lei Chen ; Yiyun Zhang ; Xiangyang Kang ; Zhiyi Zhang ; Yanwei Wang

Source :

Functional & integrative genomics [ 1438-7948 ] ; 2012.

RBID : pubmed:22415631

Descripteurs français

KwdFr :
- ARN des plantes (génétique), ARN des plantes (métabolisme), Analyse de séquence d'ARN (MeSH), Eau (physiologie), Expression des gènes (MeSH), Gènes de plante (MeSH), Inondations (MeSH), Interférence par ARN (MeSH), Populus (génétique), Populus (physiologie), Régulation de l'expression des gènes végétaux (MeSH), Stress physiologique (MeSH), Sécheresses (MeSH), Séquence conservée (MeSH), Séquence nucléotidique (MeSH), Séquençage nucléotidique à haut débit (MeSH), microARN (génétique), microARN (métabolisme).
MESH :
- génétique : ARN des plantes, Populus, microARN.
- métabolisme : ARN des plantes, microARN.
- physiologie : Eau, Populus.
- Analyse de séquence d'ARN, Expression des gènes, Gènes de plante, Inondations, Interférence par ARN, Régulation de l'expression des gènes végétaux, Stress physiologique, Sécheresses, Séquence conservée, Séquence nucléotidique, Séquençage nucléotidique à haut débit.

English descriptors

KwdEn :
- Base Sequence (MeSH), Conserved Sequence (MeSH), Droughts (MeSH), Floods (MeSH), Gene Expression (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), High-Throughput Nucleotide Sequencing (MeSH), MicroRNAs (genetics), MicroRNAs (metabolism), Populus (genetics), Populus (physiology), RNA Interference (MeSH), RNA, Plant (genetics), RNA, Plant (metabolism), Sequence Analysis, RNA (MeSH), Stress, Physiological (MeSH), Water (physiology).
MESH :
- chemical , genetics : MicroRNAs, RNA, Plant.
- chemical , metabolism : MicroRNAs, RNA, Plant.
- genetics : Populus.
- physiology : Populus, Water.
- Base Sequence, Conserved Sequence, Droughts, Floods, Gene Expression, Gene Expression Regulation, Plant, Genes, Plant, High-Throughput Nucleotide Sequencing, RNA Interference, Sequence Analysis, RNA, Stress, Physiological.

Abstract

MicroRNAs (miRNAs) are a class of small, non-coding RNAs that play important downregulation roles in plants growth, development, and stress responses. To better identify Populus tomentosa miRNAs and understand the functions of miRNAs in response to water stress (drought and flooding), 152 conserved miRNAs belonging to 36 miRNA families, 8 known but non-conserved miRNAs and 64 candidate novel miRNAs belonging to 54 miRNA families were identified and analyzed from three small RNA (sRNA) libraries (drought treatment, flooding treatment, and control) by high-throughput sequencing combined with qRT-PCR. Significant changes in the expression of 17 conserved miRNA families and nine novel miRNAs were observed in response to drought stress, and in seven conserved miRNA families and five novel miRNAs in response to flooding stress. Both miRNA and miRNA*s were involved in the regulation of plant stress responses. The annotation of the potential targets of miRNAs with differential expression indicate that many types of genes encoding transcription factors, enzymes, and signal transduction components are implicated in the abiotic stress response..

DOI: 10.1007/s10142-012-0271-6
PubMed: 22415631

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<front><div type="abstract" xml:lang="en">MicroRNAs (miRNAs) are a class of small, non-coding RNAs that play important downregulation roles in plants growth, development, and stress responses. To better identify Populus tomentosa miRNAs and understand the functions of miRNAs in response to water stress (drought and flooding), 152 conserved miRNAs belonging to 36 miRNA families, 8 known but non-conserved miRNAs and 64 candidate novel miRNAs belonging to 54 miRNA families were identified and analyzed from three small RNA (sRNA) libraries (drought treatment, flooding treatment, and control) by high-throughput sequencing combined with qRT-PCR. Significant changes in the expression of 17 conserved miRNA families and nine novel miRNAs were observed in response to drought stress, and in seven conserved miRNA families and five novel miRNAs in response to flooding stress. Both miRNA and miRNA*s were involved in the regulation of plant stress responses. The annotation of the potential targets of miRNAs with differential expression indicate that many types of genes encoding transcription factors, enzymes, and signal transduction components are implicated in the abiotic stress response..</div>
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Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress.

Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress.

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