Genome-Wide Identification of the Invertase Gene Family in Populus.
Identifieur interne : 001D40 ( Main/Exploration ); précédent : 001D39; suivant : 001D41Genome-Wide Identification of the Invertase Gene Family in Populus.
Auteurs : Zhong Chen [République populaire de Chine] ; Kai Gao [République populaire de Chine] ; Xiaoxing Su [République populaire de Chine] ; Pian Rao [République populaire de Chine] ; Xinmin An [République populaire de Chine]Source :
- PloS one [ 1932-6203 ] ; 2015.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Ascomycota (physiologie), Basse température (MeSH), Cartographie chromosomique (MeSH), Chlorure de sodium (pharmacologie), Chromosomes de plante (génétique), Données de séquences moléculaires (MeSH), Famille multigénique (MeSH), Feuilles de plante (enzymologie), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Génome végétal (génétique), Interactions hôte-pathogène (MeSH), Isoenzymes (génétique), Phylogenèse (MeSH), Populus (enzymologie), Populus (génétique), Populus (microbiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Racines de plante (enzymologie), Racines de plante (génétique), Racines de plante (microbiologie), Régulation de l'expression des gènes codant pour des enzymes (effets des médicaments et des substances chimiques), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Similitude de séquences d'acides aminés (MeSH), Séquence d'acides aminés (MeSH), beta-Fructofuranosidase (classification), beta-Fructofuranosidase (génétique), beta-Fructofuranosidase (métabolisme).
- MESH :
- classification : beta-Fructofuranosidase.
- effets des médicaments et des substances chimiques : Régulation de l'expression des gènes codant pour des enzymes, Régulation de l'expression des gènes végétaux.
- enzymologie : Feuilles de plante, Populus, Racines de plante.
- génétique : Chromosomes de plante, Feuilles de plante, Génome végétal, Isoenzymes, Populus, Protéines végétales, Racines de plante, beta-Fructofuranosidase.
- microbiologie : Feuilles de plante, Populus, Racines de plante.
- métabolisme : Protéines végétales, beta-Fructofuranosidase.
- pharmacologie : Chlorure de sodium.
- physiologie : Ascomycota.
- Analyse de profil d'expression de gènes, Basse température, Cartographie chromosomique, Données de séquences moléculaires, Famille multigénique, Interactions hôte-pathogène, Phylogenèse, Similitude de séquences d'acides aminés, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Ascomycota (physiology), Chromosome Mapping (MeSH), Chromosomes, Plant (genetics), Cold Temperature (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Enzymologic (drug effects), Gene Expression Regulation, Plant (drug effects), Genome, Plant (genetics), Host-Pathogen Interactions (MeSH), Isoenzymes (genetics), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Leaves (enzymology), Plant Leaves (genetics), Plant Leaves (microbiology), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Roots (enzymology), Plant Roots (genetics), Plant Roots (microbiology), Populus (enzymology), Populus (genetics), Populus (microbiology), Sequence Homology, Amino Acid (MeSH), Sodium Chloride (pharmacology), beta-Fructofuranosidase (classification), beta-Fructofuranosidase (genetics), beta-Fructofuranosidase (metabolism).
- MESH :
- chemical , classification : beta-Fructofuranosidase.
- chemical , genetics : Isoenzymes, Plant Proteins, beta-Fructofuranosidase.
- drug effects : Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Plant.
- enzymology : Plant Leaves, Plant Roots, Populus.
- genetics : Chromosomes, Plant, Genome, Plant, Plant Leaves, Plant Roots, Populus.
- chemical , metabolism : Plant Proteins, beta-Fructofuranosidase.
- microbiology : Plant Leaves, Plant Roots, Populus.
- chemical , pharmacology : Sodium Chloride.
- physiology : Ascomycota.
- Amino Acid Sequence, Chromosome Mapping, Cold Temperature, Gene Expression Profiling, Host-Pathogen Interactions, Molecular Sequence Data, Multigene Family, Phylogeny, Sequence Homology, Amino Acid.
Abstract
Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (PtCWINV1-5), 3 vacuolar invertase genes (PtVINV1-3) and 16 neutral/alkaline invertase genes (PtNINV1-16) were identified in the Populus genome and found to be distributed on 14 chromosomes. A comprehensive analysis of poplar invertase genes was performed, including structures, chromosome location, phylogeny, evolutionary pattern and expression profiles. Phylogenetic analysis indicated that the two sub-families were both divided into two clades. Segmental duplication is contributed to neutral/alkaline sub-family expansion. Furthermore, the Populus invertase genes displayed differential expression in roots, stems, leaves, leaf buds and in response to salt/cold stress and pathogen infection. In addition, the analysis of enzyme activity and sugar content revealed that invertase genes play key roles in the sucrose metabolism of various tissues and organs in poplar. This work lays the foundation for future functional analysis of the invertase genes in Populus and other woody perennials.
DOI: 10.1371/journal.pone.0138540
PubMed: 26393355
PubMed Central: PMC4579127
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Ascomycota (physiology)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Plant (genetics)</term>
<term>Cold Temperature (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Enzymologic (drug effects)</term>
<term>Gene Expression Regulation, Plant (drug effects)</term>
<term>Genome, Plant (genetics)</term>
<term>Host-Pathogen Interactions (MeSH)</term>
<term>Isoenzymes (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Multigene Family (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Leaves (enzymology)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (microbiology)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plant Roots (enzymology)</term>
<term>Plant Roots (genetics)</term>
<term>Plant Roots (microbiology)</term>
<term>Populus (enzymology)</term>
<term>Populus (genetics)</term>
<term>Populus (microbiology)</term>
<term>Sequence Homology, Amino Acid (MeSH)</term>
<term>Sodium Chloride (pharmacology)</term>
<term>beta-Fructofuranosidase (classification)</term>
<term>beta-Fructofuranosidase (genetics)</term>
<term>beta-Fructofuranosidase (metabolism)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Ascomycota (physiologie)</term>
<term>Basse température (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chlorure de sodium (pharmacologie)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Feuilles de plante (enzymologie)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (microbiologie)</term>
<term>Génome végétal (génétique)</term>
<term>Interactions hôte-pathogène (MeSH)</term>
<term>Isoenzymes (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (enzymologie)</term>
<term>Populus (génétique)</term>
<term>Populus (microbiologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Racines de plante (enzymologie)</term>
<term>Racines de plante (génétique)</term>
<term>Racines de plante (microbiologie)</term>
<term>Régulation de l'expression des gènes codant pour des enzymes (effets des médicaments et des substances chimiques)</term>
<term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term>
<term>Similitude de séquences d'acides aminés (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>beta-Fructofuranosidase (classification)</term>
<term>beta-Fructofuranosidase (génétique)</term>
<term>beta-Fructofuranosidase (métabolisme)</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Isoenzymes</term>
<term>Plant Proteins</term>
<term>beta-Fructofuranosidase</term>
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<keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>beta-Fructofuranosidase</term>
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<term>Gene Expression Regulation, Plant</term>
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<term>Régulation de l'expression des gènes végétaux</term>
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<term>Racines de plante</term>
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<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Populus</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term>
<term>Genome, Plant</term>
<term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Populus</term>
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<term>Feuilles de plante</term>
<term>Génome végétal</term>
<term>Isoenzymes</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Racines de plante</term>
<term>beta-Fructofuranosidase</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term>
<term>beta-Fructofuranosidase</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term>
<term>Populus</term>
<term>Racines de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Populus</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines végétales</term>
<term>beta-Fructofuranosidase</term>
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<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Chlorure de sodium</term>
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<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Sodium Chloride</term>
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</keywords>
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<term>Chromosome Mapping</term>
<term>Cold Temperature</term>
<term>Gene Expression Profiling</term>
<term>Host-Pathogen Interactions</term>
<term>Molecular Sequence Data</term>
<term>Multigene Family</term>
<term>Phylogeny</term>
<term>Sequence Homology, Amino Acid</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
<term>Basse température</term>
<term>Cartographie chromosomique</term>
<term>Données de séquences moléculaires</term>
<term>Famille multigénique</term>
<term>Interactions hôte-pathogène</term>
<term>Phylogenèse</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Séquence d'acides aminés</term>
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<front><div type="abstract" xml:lang="en">Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (PtCWINV1-5), 3 vacuolar invertase genes (PtVINV1-3) and 16 neutral/alkaline invertase genes (PtNINV1-16) were identified in the Populus genome and found to be distributed on 14 chromosomes. A comprehensive analysis of poplar invertase genes was performed, including structures, chromosome location, phylogeny, evolutionary pattern and expression profiles. Phylogenetic analysis indicated that the two sub-families were both divided into two clades. Segmental duplication is contributed to neutral/alkaline sub-family expansion. Furthermore, the Populus invertase genes displayed differential expression in roots, stems, leaves, leaf buds and in response to salt/cold stress and pathogen infection. In addition, the analysis of enzyme activity and sugar content revealed that invertase genes play key roles in the sucrose metabolism of various tissues and organs in poplar. This work lays the foundation for future functional analysis of the invertase genes in Populus and other woody perennials. </div>
</front>
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<ArticleTitle>Genome-Wide Identification of the Invertase Gene Family in Populus.</ArticleTitle>
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<Abstract><AbstractText>Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (PtCWINV1-5), 3 vacuolar invertase genes (PtVINV1-3) and 16 neutral/alkaline invertase genes (PtNINV1-16) were identified in the Populus genome and found to be distributed on 14 chromosomes. A comprehensive analysis of poplar invertase genes was performed, including structures, chromosome location, phylogeny, evolutionary pattern and expression profiles. Phylogenetic analysis indicated that the two sub-families were both divided into two clades. Segmental duplication is contributed to neutral/alkaline sub-family expansion. Furthermore, the Populus invertase genes displayed differential expression in roots, stems, leaves, leaf buds and in response to salt/cold stress and pathogen infection. In addition, the analysis of enzyme activity and sugar content revealed that invertase genes play key roles in the sucrose metabolism of various tissues and organs in poplar. This work lays the foundation for future functional analysis of the invertase genes in Populus and other woody perennials. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Zhong</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China; Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gao</LastName>
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