PoplarV1, Main, Exploration, bibRecord, 001B19

The Lipoxygenase Gene Family in Poplar: Identification, Classification, and Expression in Response to MeJA Treatment.

Identifieur interne : 001B19 ( Main/Exploration ); précédent : 001B18; suivant : 001B20

The Lipoxygenase Gene Family in Poplar: Identification, Classification, and Expression in Response to MeJA Treatment.

Auteurs : Zhu Chen [République populaire de Chine] ; Xue Chen [République populaire de Chine] ; Hanwei Yan [République populaire de Chine] ; Weiwei Li [République populaire de Chine] ; Yuan Li [République populaire de Chine] ; Ronghao Cai [République populaire de Chine] ; Yan Xiang [République populaire de Chine]

Source :

PloS one [ 1932-6203 ] ; 2015.

RBID : pubmed:25928711

Descripteurs français

KwdFr :
- Acétates (pharmacologie), Cyclopentanes (pharmacologie), Lipoxygenase (classification), Lipoxygenase (génétique), Oxylipines (pharmacologie), Phylogenèse (MeSH), Populus (effets des médicaments et des substances chimiques), Populus (enzymologie), Protéines végétales (classification), Protéines végétales (génétique), RT-PCR (MeSH), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Régulation de l'expression des gènes végétaux (génétique).
MESH :
- classification : Lipoxygenase, Protéines végétales.
- effets des médicaments et des substances chimiques : Populus, Régulation de l'expression des gènes végétaux.
- enzymologie : Populus.
- génétique : Lipoxygenase, Protéines végétales, Régulation de l'expression des gènes végétaux.
- pharmacologie : Acétates, Cyclopentanes, Oxylipines.
- Phylogenèse, RT-PCR.

English descriptors

KwdEn :
- Acetates (pharmacology), Cyclopentanes (pharmacology), Gene Expression Regulation, Plant (drug effects), Gene Expression Regulation, Plant (genetics), Lipoxygenase (classification), Lipoxygenase (genetics), Oxylipins (pharmacology), Phylogeny (MeSH), Plant Proteins (classification), Plant Proteins (genetics), Populus (drug effects), Populus (enzymology), Reverse Transcriptase Polymerase Chain Reaction (MeSH).
MESH :
- chemical , classification : Lipoxygenase, Plant Proteins.
- chemical , genetics : Lipoxygenase, Plant Proteins.
- chemical , pharmacology : Acetates, Cyclopentanes, Oxylipins.
- drug effects : Gene Expression Regulation, Plant, Populus.
- enzymology : Populus.
- genetics : Gene Expression Regulation, Plant.
- Phylogeny, Reverse Transcriptase Polymerase Chain Reaction.

Abstract

BACKGROUND

Lipoxygenases (LOXs) are important dioxygenases in cellular organisms. LOXs contribute to plant developmental processes and environmental responses. However, a systematic and comprehensive analysis has not been focused on the LOX gene family in poplar. Therefore, in the present study, we performed a comprehensive analysis of the LOX gene family in poplar.

RESULTS

Using bioinformatics methods, we identified a total of 20 LOX genes. These LOX genes were clustered into two subfamilies. The gene structure and motif composition of each subfamily were relatively conserved. These genes are distributed unevenly across nine chromosomes. The PtLOX gene family appears to have expanded due to high tandem and low segmental duplication events. Microarray analysis showed that a number of PtLOX genes have different expression pattern across disparate tissues and under various stress treatments. Quantitative real-time PCR (qRT-PCR) analysis was further performed to confirm the responses to MeJA treatment of the 20 poplar LOX genes. The results show that the PtLOX genes are regulated by MeJA (Methyl jasmonate) treatment.

CONCLUSIONS

This study provides a systematic analysis of LOX genes in poplar. The gene family analysis reported here will be useful for conducting future functional genomics studies to uncover the roles of LOX genes in poplar growth and development.

DOI: 10.1371/journal.pone.0125526
PubMed: 25928711
PubMed Central: PMC4415952

Affiliations:

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Le document en format XML

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<term>Lipoxygenase (genetics)</term>
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<term>Régulation de l'expression des gènes végétaux</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
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<p>Lipoxygenases (LOXs) are important dioxygenases in cellular organisms. LOXs contribute to plant developmental processes and environmental responses. However, a systematic and comprehensive analysis has not been focused on the LOX gene family in poplar. Therefore, in the present study, we performed a comprehensive analysis of the LOX gene family in poplar.</p>
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<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>Using bioinformatics methods, we identified a total of 20 LOX genes. These LOX genes were clustered into two subfamilies. The gene structure and motif composition of each subfamily were relatively conserved. These genes are distributed unevenly across nine chromosomes. The PtLOX gene family appears to have expanded due to high tandem and low segmental duplication events. Microarray analysis showed that a number of PtLOX genes have different expression pattern across disparate tissues and under various stress treatments. Quantitative real-time PCR (qRT-PCR) analysis was further performed to confirm the responses to MeJA treatment of the 20 poplar LOX genes. The results show that the PtLOX genes are regulated by MeJA (Methyl jasmonate) treatment.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>This study provides a systematic analysis of LOX genes in poplar. The gene family analysis reported here will be useful for conducting future functional genomics studies to uncover the roles of LOX genes in poplar growth and development.</p>
</div>
</front>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Lipoxygenases (LOXs) are important dioxygenases in cellular organisms. LOXs contribute to plant developmental processes and environmental responses. However, a systematic and comprehensive analysis has not been focused on the LOX gene family in poplar. Therefore, in the present study, we performed a comprehensive analysis of the LOX gene family in poplar.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">Using bioinformatics methods, we identified a total of 20 LOX genes. These LOX genes were clustered into two subfamilies. The gene structure and motif composition of each subfamily were relatively conserved. These genes are distributed unevenly across nine chromosomes. The PtLOX gene family appears to have expanded due to high tandem and low segmental duplication events. Microarray analysis showed that a number of PtLOX genes have different expression pattern across disparate tissues and under various stress treatments. Quantitative real-time PCR (qRT-PCR) analysis was further performed to confirm the responses to MeJA treatment of the 20 poplar LOX genes. The results show that the PtLOX genes are regulated by MeJA (Methyl jasmonate) treatment.</AbstractText>
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The Lipoxygenase Gene Family in Poplar: Identification, Classification, and Expression in Response to MeJA Treatment.

The Lipoxygenase Gene Family in Poplar: Identification, Classification, and Expression in Response to MeJA Treatment.

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