The Plant Genome Integrative Explorer Resource: PlantGenIE.org.
Identifieur interne : 001B16 ( Main/Exploration ); précédent : 001B15; suivant : 001B17The Plant Genome Integrative Explorer Resource: PlantGenIE.org.
Auteurs : David Sundell [Suède] ; Chanaka Mannapperuma [Suède] ; Sergiu Netotea [Suède] ; Nicolas Delhomme [Suède] ; Yao-Cheng Lin [Belgique] ; Andreas Sjödin [Suède] ; Yves Van De Peer [Belgique, Afrique du Sud] ; Stefan Jansson [Suède] ; Torgeir R. Hvidsten [Suède, Norvège] ; Nathaniel R. Street [Suède]Source :
- The New phytologist [ 1469-8137 ] ; 2015.
Descripteurs français
- KwdFr :
- ARN des plantes (MeSH), Analyse de séquence d'ADN (MeSH), Arabidopsis (génétique), Arbres (génétique), Bases de données factuelles (MeSH), Biologie informatique (MeSH), Expression des gènes (MeSH), Forêts (MeSH), Gènes de plante (MeSH), Génome végétal (MeSH), Génomique (méthodes), Internet (MeSH), Modèles biologiques (MeSH), Populus (génétique), Tracheobionta (génétique).
- MESH :
English descriptors
- KwdEn :
- Arabidopsis (genetics), Computational Biology (MeSH), Databases, Factual (MeSH), Forests (MeSH), Gene Expression (MeSH), Genes, Plant (MeSH), Genome, Plant (MeSH), Genomics (methods), Internet (MeSH), Models, Biological (MeSH), Populus (genetics), RNA, Plant (MeSH), Sequence Analysis, DNA (MeSH), Tracheophyta (genetics), Trees (genetics).
- MESH :
- chemical : RNA, Plant.
- genetics : Arabidopsis, Populus, Tracheophyta, Trees.
- methods : Genomics.
- Computational Biology, Databases, Factual, Forests, Gene Expression, Genes, Plant, Genome, Plant, Internet, Models, Biological, Sequence Analysis, DNA.
Abstract
Accessing and exploring large-scale genomics data sets remains a significant challenge to researchers without specialist bioinformatics training. We present the integrated PlantGenIE.org platform for exploration of Populus, conifer and Arabidopsis genomics data, which includes expression networks and associated visualization tools. Standard features of a model organism database are provided, including genome browsers, gene list annotation, Blast homology searches and gene information pages. Community annotation updating is supported via integration of WebApollo. We have produced an RNA-sequencing (RNA-Seq) expression atlas for Populus tremula and have integrated these data within the expression tools. An updated version of the ComPlEx resource for performing comparative plant expression analyses of gene coexpression network conservation between species has also been integrated. The PlantGenIE.org platform provides intuitive access to large-scale and genome-wide genomics data from model forest tree species, facilitating both community contributions to annotation improvement and tools supporting use of the included data resources to inform biological insight.
DOI: 10.1111/nph.13557
PubMed: 26192091
Affiliations:
- Afrique du Sud, Belgique, Norvège, Suède
- Province de Flandre-Orientale, Région flamande
- Gand
- Université de Gand
Links toward previous steps (curation, corpus...)
Le document en format XML
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Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Mannapperuma, Chanaka" sort="Mannapperuma, Chanaka" uniqKey="Mannapperuma C" first="Chanaka" last="Mannapperuma">Chanaka Mannapperuma</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Netotea, Sergiu" sort="Netotea, Sergiu" uniqKey="Netotea S" first="Sergiu" last="Netotea">Sergiu Netotea</name><affiliation wicri:level="1"><nlm:affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Delhomme, Nicolas" sort="Delhomme, Nicolas" uniqKey="Delhomme N" first="Nicolas" last="Delhomme">Nicolas Delhomme</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Lin, Yao Cheng" sort="Lin, Yao Cheng" uniqKey="Lin Y" first="Yao-Cheng" last="Lin">Yao-Cheng Lin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Systems Biology, VIB, Ghent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Systems Biology, VIB, Ghent</wicri:regionArea><wicri:noRegion>Ghent</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name><affiliation wicri:level="1"><nlm:affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Van De Peer, Yves" sort="Van De Peer, Yves" uniqKey="Van De Peer Y" first="Yves" last="Van De Peer">Yves Van De Peer</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Systems Biology, VIB, Ghent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Systems Biology, VIB, Ghent</wicri:regionArea><wicri:noRegion>Ghent</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Genomics Research Institute, University of Pretoria, Hatfield Campus, 0028, Pretoria, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Genomics Research Institute, University of Pretoria, Hatfield Campus, 0028, Pretoria</wicri:regionArea><wicri:noRegion>Pretoria</wicri:noRegion></affiliation></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Hvidsten, Torgeir R" sort="Hvidsten, Torgeir R" uniqKey="Hvidsten T" first="Torgeir R" last="Hvidsten">Torgeir R. Hvidsten</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1432, Ås, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1432, Ås</wicri:regionArea><wicri:noRegion>Ås</wicri:noRegion></affiliation></author><author><name sortKey="Street, Nathaniel R" sort="Street, Nathaniel R" uniqKey="Street N" first="Nathaniel R" last="Street">Nathaniel R. Street</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Computational Biology (MeSH)</term><term>Databases, Factual (MeSH)</term><term>Forests (MeSH)</term><term>Gene Expression (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Genomics (methods)</term><term>Internet (MeSH)</term><term>Models, Biological (MeSH)</term><term>Populus (genetics)</term><term>RNA, Plant (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Tracheophyta (genetics)</term><term>Trees (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN des plantes (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Arabidopsis (génétique)</term><term>Arbres (génétique)</term><term>Bases de données factuelles (MeSH)</term><term>Biologie informatique (MeSH)</term><term>Expression des gènes (MeSH)</term><term>Forêts (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Génome végétal (MeSH)</term><term>Génomique (méthodes)</term><term>Internet (MeSH)</term><term>Modèles biologiques (MeSH)</term><term>Populus (génétique)</term><term>Tracheobionta (génétique)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>RNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Populus</term><term>Tracheophyta</term><term>Trees</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Arbres</term><term>Populus</term><term>Tracheobionta</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genomics</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Génomique</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Computational Biology</term><term>Databases, Factual</term><term>Forests</term><term>Gene Expression</term><term>Genes, Plant</term><term>Genome, Plant</term><term>Internet</term><term>Models, Biological</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ARN des plantes</term><term>Analyse de séquence d'ADN</term><term>Bases de données factuelles</term><term>Biologie informatique</term><term>Expression des gènes</term><term>Forêts</term><term>Gènes de plante</term><term>Génome végétal</term><term>Internet</term><term>Modèles biologiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Accessing and exploring large-scale genomics data sets remains a significant challenge to researchers without specialist bioinformatics training. We present the integrated PlantGenIE.org platform for exploration of Populus, conifer and Arabidopsis genomics data, which includes expression networks and associated visualization tools. Standard features of a model organism database are provided, including genome browsers, gene list annotation, Blast homology searches and gene information pages. Community annotation updating is supported via integration of WebApollo. We have produced an RNA-sequencing (RNA-Seq) expression atlas for Populus tremula and have integrated these data within the expression tools. An updated version of the ComPlEx resource for performing comparative plant expression analyses of gene coexpression network conservation between species has also been integrated. The PlantGenIE.org platform provides intuitive access to large-scale and genome-wide genomics data from model forest tree species, facilitating both community contributions to annotation improvement and tools supporting use of the included data resources to inform biological insight. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26192091</PMID><DateCompleted><Year>2016</Year><Month>09</Month><Day>06</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>208</Volume><Issue>4</Issue><PubDate><Year>2015</Year><Month>Dec</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>The Plant Genome Integrative Explorer Resource: PlantGenIE.org.</ArticleTitle><Pagination><MedlinePgn>1149-56</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.13557</ELocationID><Abstract><AbstractText>Accessing and exploring large-scale genomics data sets remains a significant challenge to researchers without specialist bioinformatics training. We present the integrated PlantGenIE.org platform for exploration of Populus, conifer and Arabidopsis genomics data, which includes expression networks and associated visualization tools. Standard features of a model organism database are provided, including genome browsers, gene list annotation, Blast homology searches and gene information pages. Community annotation updating is supported via integration of WebApollo. We have produced an RNA-sequencing (RNA-Seq) expression atlas for Populus tremula and have integrated these data within the expression tools. An updated version of the ComPlEx resource for performing comparative plant expression analyses of gene coexpression network conservation between species has also been integrated. The PlantGenIE.org platform provides intuitive access to large-scale and genome-wide genomics data from model forest tree species, facilitating both community contributions to annotation improvement and tools supporting use of the included data resources to inform biological insight. </AbstractText><CopyrightInformation>© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sundell</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mannapperuma</LastName><ForeName>Chanaka</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Netotea</LastName><ForeName>Sergiu</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Delhomme</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Yao-Cheng</ForeName><Initials>YC</Initials><AffiliationInfo><Affiliation>Department of Plant Systems Biology, VIB, Ghent, Belgium.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sjödin</LastName><ForeName>Andreas</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Chemistry, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Van de Peer</LastName><ForeName>Yves</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Department of Plant Systems Biology, VIB, Ghent, Belgium.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Genomics Research Institute, University of Pretoria, Hatfield Campus, 0028, Pretoria, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jansson</LastName><ForeName>Stefan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hvidsten</LastName><ForeName>Torgeir R</ForeName><Initials>TR</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1432, Ås, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Street</LastName><ForeName>Nathaniel R</ForeName><Initials>NR</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Computational Life Science Cluster (CLiC), Umeå University, SE-907 81, Umeå, Sweden.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>07</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018749">RNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019295" MajorTopicYN="N">Computational Biology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016208" MajorTopicYN="Y">Databases, Factual</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D065928" MajorTopicYN="N">Forests</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015870" MajorTopicYN="N">Gene Expression</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020407" MajorTopicYN="N">Internet</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008954" MajorTopicYN="N">Models, Biological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018749" MajorTopicYN="N">RNA, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D064028" MajorTopicYN="N">Tracheophyta</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus</Keyword><Keyword MajorTopicYN="N">annotation</Keyword><Keyword MajorTopicYN="N">coexpression</Keyword><Keyword MajorTopicYN="N">conifer</Keyword><Keyword MajorTopicYN="N">database</Keyword><Keyword MajorTopicYN="N">genome browser</Keyword><Keyword MajorTopicYN="N">transcriptomics</Keyword><Keyword MajorTopicYN="N">web resource</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>03</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>06</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>7</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>7</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>9</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26192091</ArticleId><ArticleId IdType="doi">10.1111/nph.13557</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Afrique du Sud</li><li>Belgique</li><li>Norvège</li><li>Suède</li></country><region><li>Province de Flandre-Orientale</li><li>Région 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