PoplarV1, Main, Exploration, bibRecord, 001953

Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa.

Identifieur interne : 001953 ( Main/Exploration ); précédent : 001952; suivant : 001954

Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa.

Auteurs : Zhanchao Wang [République populaire de Chine] ; Quangang Liu [République populaire de Chine] ; Hanzeng Wang [République populaire de Chine] ; Haizhen Zhang [République populaire de Chine] ; Xuemei Xu [République populaire de Chine] ; Chenghao Li [République populaire de Chine] ; Chuanping Yang [République populaire de Chine]

Source :

Scientific reports [ 2045-2322 ] ; 2016.

RBID : pubmed:27782188

Descripteurs français

English descriptors

KwdEn :
- Chromosomes, Plant (genetics), Gene Duplication (MeSH), Gene Expression Profiling (MeSH), Gene Ontology (MeSH), Genes, Plant (MeSH), MicroRNAs (genetics), Molecular Sequence Annotation (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Plants, Genetically Modified (MeSH), Populus (genetics), Promoter Regions, Genetic (MeSH), RNA, Plant (genetics), Stress, Physiological (genetics), Transcription Factors (genetics).
MESH :
- chemical , genetics : MicroRNAs, Plant Proteins, RNA, Plant, Transcription Factors.
- genetics : Chromosomes, Plant, Populus, Stress, Physiological.
- Gene Duplication, Gene Expression Profiling, Gene Ontology, Genes, Plant, Molecular Sequence Annotation, Multigene Family, Phylogeny, Plants, Genetically Modified, Promoter Regions, Genetic.

Abstract

Trihelix genes play important roles in plant growth and development and responses to biotic and abiotic stresses. Here, we identified 56 full-length trihelix genes in Populus trichocarpa and classified them into five groups. Most genes within a given group had similar gene structures and conserved motifs. The trihelix genes were unequally distributed across 19 different linkage groups. Fifteen paralogous pairs were identified, 14 of which have undergone segmental duplication events. Promoter cis-element analysis indicated that most trihelix genes contain stress- or phytohormone-related cis-elements. The expression profiles of the trihelix genes suggest that they are primarily expressed in leaves and roots. Quantitative real-time reverse transcription polymerase chain reaction analysis indicated that members of the trihelix gene family are significantly induced in response to osmotic, abscisic acid, salicylic acid, methyl jasmonate and pathogen infection. PtrGT10 was identified as a target gene of miR172d, which is involved in the osmotic response. Repression of PtrGT10 could increase reactive oxygen species scavenging ability and decrease cell death. This study provides novel insights into the phylogenetic relationships and functions of the P. trichocarpa trihelix genes, which will aid future functional studies investigating the divergent roles of trihelix genes belonging to other species.

DOI: 10.1038/srep36274
PubMed: 27782188
PubMed Central: PMC5080644

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Genes, Plant (MeSH)</term>
<term>MicroRNAs (genetics)</term>
<term>Molecular Sequence Annotation (MeSH)</term>
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<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Annotation de séquence moléculaire (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Duplication de gène (MeSH)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Famille multigénique (MeSH)</term>
<term>Gene Ontology (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (génétique)</term>
<term>Protéines végétales (génétique)</term>
<term>Régions promotrices (génétique) (MeSH)</term>
<term>Stress physiologique (génétique)</term>
<term>Végétaux génétiquement modifiés (MeSH)</term>
<term>microARN (génétique)</term>
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<term>Plant Proteins</term>
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<term>Facteurs de transcription</term>
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<term>Protéines végétales</term>
<term>Stress physiologique</term>
<term>microARN</term>
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<term>Gene Ontology</term>
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<front><div type="abstract" xml:lang="en">Trihelix genes play important roles in plant growth and development and responses to biotic and abiotic stresses. Here, we identified 56 full-length trihelix genes in Populus trichocarpa and classified them into five groups. Most genes within a given group had similar gene structures and conserved motifs. The trihelix genes were unequally distributed across 19 different linkage groups. Fifteen paralogous pairs were identified, 14 of which have undergone segmental duplication events. Promoter cis-element analysis indicated that most trihelix genes contain stress- or phytohormone-related cis-elements. The expression profiles of the trihelix genes suggest that they are primarily expressed in leaves and roots. Quantitative real-time reverse transcription polymerase chain reaction analysis indicated that members of the trihelix gene family are significantly induced in response to osmotic, abscisic acid, salicylic acid, methyl jasmonate and pathogen infection. PtrGT10 was identified as a target gene of miR172d, which is involved in the osmotic response. Repression of PtrGT10 could increase reactive oxygen species scavenging ability and decrease cell death. This study provides novel insights into the phylogenetic relationships and functions of the P. trichocarpa trihelix genes, which will aid future functional studies investigating the divergent roles of trihelix genes belonging to other species.</div>
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<Abstract><AbstractText>Trihelix genes play important roles in plant growth and development and responses to biotic and abiotic stresses. Here, we identified 56 full-length trihelix genes in Populus trichocarpa and classified them into five groups. Most genes within a given group had similar gene structures and conserved motifs. The trihelix genes were unequally distributed across 19 different linkage groups. Fifteen paralogous pairs were identified, 14 of which have undergone segmental duplication events. Promoter cis-element analysis indicated that most trihelix genes contain stress- or phytohormone-related cis-elements. The expression profiles of the trihelix genes suggest that they are primarily expressed in leaves and roots. Quantitative real-time reverse transcription polymerase chain reaction analysis indicated that members of the trihelix gene family are significantly induced in response to osmotic, abscisic acid, salicylic acid, methyl jasmonate and pathogen infection. PtrGT10 was identified as a target gene of miR172d, which is involved in the osmotic response. Repression of PtrGT10 could increase reactive oxygen species scavenging ability and decrease cell death. This study provides novel insights into the phylogenetic relationships and functions of the P. trichocarpa trihelix genes, which will aid future functional studies investigating the divergent roles of trihelix genes belonging to other species.</AbstractText>
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<name sortKey="Wang, Hanzeng" sort="Wang, Hanzeng" uniqKey="Wang H" first="Hanzeng" last="Wang">Hanzeng Wang</name>
<name sortKey="Xu, Xuemei" sort="Xu, Xuemei" uniqKey="Xu X" first="Xuemei" last="Xu">Xuemei Xu</name>
<name sortKey="Yang, Chuanping" sort="Yang, Chuanping" uniqKey="Yang C" first="Chuanping" last="Yang">Chuanping Yang</name>
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Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa.

Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa.

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