Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.
Identifieur interne : 001497 ( Main/Exploration ); précédent : 001496; suivant : 001498Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.
Auteurs : Sara E. Blumer-Schuette [États-Unis] ; Jeffrey V. Zurawski [États-Unis] ; Jonathan M. Conway [États-Unis] ; Piyum Khatibi [États-Unis] ; Derrick L. Lewis [États-Unis] ; Quanzi Li [États-Unis] ; Vincent L. Chiang [États-Unis] ; Robert M. Kelly [États-Unis]Source :
- Microbial biotechnology [ 1751-7915 ] ; 2017.
Descripteurs français
- KwdFr :
- Acides (composition chimique), Biotransformation (MeSH), Firmicutes (génétique), Firmicutes (métabolisme), Lignine (métabolisme), Populus (composition chimique), Populus (génétique), Populus (microbiologie), Populus (métabolisme), Protéines bactériennes (génétique), Protéines bactériennes (métabolisme), Transcriptome (MeSH).
- MESH :
- composition chimique : Acides, Populus.
- génétique : Firmicutes, Populus, Protéines bactériennes.
- microbiologie : Populus.
- métabolisme : Firmicutes, Lignine, Populus, Protéines bactériennes.
- Biotransformation, Transcriptome.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Acids.
- chemical , genetics : Bacterial Proteins.
- chemical , metabolism : Bacterial Proteins, Lignin.
- chemistry : Populus.
- genetics : Firmicutes, Populus.
- metabolism : Firmicutes, Populus.
- microbiology : Populus.
- Biotransformation, Transcriptome.
Abstract
Recalcitrance of plant biomass is a major barrier for commercially feasible cellulosic biofuel production. Chemical and enzymatic assays have been developed to measure recalcitrance and carbohydrate composition; however, none of these assays can directly report which polysaccharides a candidate microbe will sense during growth on these substrates. Here, we propose using the transcriptomic response of the plant biomass-deconstructing microbe, Caldicellulosiruptor saccharolyticus, as a direct measure of how suitable a sample of plant biomass may be for fermentation based on the bioavailability of polysaccharides. Key genes were identified using the global gene response of the microbe to model plant polysaccharides and various types of unpretreated, chemically pretreated and genetically modified plant biomass. While the majority of C. saccharolyticus genes responding were similar between plant biomasses; subtle differences were discernable, most importantly between chemically pretreated or genetically modified biomass that both exhibit similar levels of solubilization by the microbe. Furthermore, the results here present a new paradigm for assessing plant-microbe interactions that can be deployed as a biological assay to report on the complexity and recalcitrance of plant biomass.
DOI: 10.1111/1751-7915.12494
PubMed: 28322023
PubMed Central: PMC5658599
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<front><div type="abstract" xml:lang="en">Recalcitrance of plant biomass is a major barrier for commercially feasible cellulosic biofuel production. Chemical and enzymatic assays have been developed to measure recalcitrance and carbohydrate composition; however, none of these assays can directly report which polysaccharides a candidate microbe will sense during growth on these substrates. Here, we propose using the transcriptomic response of the plant biomass-deconstructing microbe, Caldicellulosiruptor saccharolyticus, as a direct measure of how suitable a sample of plant biomass may be for fermentation based on the bioavailability of polysaccharides. Key genes were identified using the global gene response of the microbe to model plant polysaccharides and various types of unpretreated, chemically pretreated and genetically modified plant biomass. While the majority of C. saccharolyticus genes responding were similar between plant biomasses; subtle differences were discernable, most importantly between chemically pretreated or genetically modified biomass that both exhibit similar levels of solubilization by the microbe. Furthermore, the results here present a new paradigm for assessing plant-microbe interactions that can be deployed as a biological assay to report on the complexity and recalcitrance of plant biomass.</div>
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