Genome-wide analysis of miRNAs in Carya cathayensis.
Identifieur interne : 001369 ( Main/Exploration ); précédent : 001368; suivant : 001370Genome-wide analysis of miRNAs in Carya cathayensis.
Auteurs : Zhi-Chao Sun [République populaire de Chine] ; Liang-Sheng Zhang [République populaire de Chine] ; Zheng-Jia Wang [République populaire de Chine]Source :
- BMC plant biology [ 1471-2229 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Carya.
- génétique : ARN des plantes, Carya, microARN.
- Gènes de plante, Phylogenèse, Transcriptome, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : MicroRNAs, RNA, Plant.
- genetics : Carya.
- growth & development : Carya.
- Evolution, Molecular, Genes, Plant, Phylogeny, Transcriptome.
Abstract
BACKGROUND
MicroRNA (miRNA) plays an important role in plant development regulation. Hickory is an economically important plant in which the amount of flowering determines its production.
RESULTS
Here, 51 conserved miRNAs, which belong to 16 families and 195 novel miRNAs were identified in hickory genome. For each conserved miRNA family, we used sequences from hickory and other plants to construct a phylogenetic tree, which shows that each family has members in hickory. Some of the conserved miRNA families (i.e., miR167 and miR397) have more members in hickory than in other plants because of gene expansion. MiR166 exhibited tandem duplication with three copies being observed. Many members of these conserved miRNA families were detected in hickory flowers, and the expression patterns of target genes were opposite to those of the related miRNAs, indicating that miRNAs may have important functions in floral regulation of hickory.
CONCLUSIONS
Taken together, a comprehensive analysis was conducted to identify miRNAs produced in hickory flower organs, demonstrating functional conservation and diversity of miRNA families among hickory, Arabidopsis, grape, and poplar.
DOI: 10.1186/s12870-017-1180-6
PubMed: 29187147
PubMed Central: PMC5708078
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; Ministry of Education Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. fafuzhang@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Genomics and Biotechnology; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; Ministry of Education Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002</wicri:regionArea><wicri:noRegion>350002</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Zheng Jia" sort="Wang, Zheng Jia" uniqKey="Wang Z" first="Zheng-Jia" last="Wang">Zheng-Jia Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China. wzhj21@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Hangzhou, 311300</wicri:regionArea><wicri:noRegion>311300</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>School of Forestry and Biotechnology, Zhejiang A and F University, Dong Hu Campus, 88 Northern Circle Road, Linan, 311300, China. wzhj21@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Forestry and Biotechnology, Zhejiang A and F University, Dong Hu Campus, 88 Northern Circle Road, Linan, 311300</wicri:regionArea><wicri:noRegion>311300</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Carya (genetics)</term><term>Carya (growth & development)</term><term>Evolution, Molecular (MeSH)</term><term>Genes, Plant (MeSH)</term><term>MicroRNAs (genetics)</term><term>Phylogeny (MeSH)</term><term>RNA, Plant (genetics)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN des plantes (génétique)</term><term>Carya (croissance et développement)</term><term>Carya (génétique)</term><term>Gènes de plante (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Transcriptome (MeSH)</term><term>microARN (génétique)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>MicroRNAs</term><term>RNA, Plant</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Carya</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Carya</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Carya</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN des plantes</term><term>Carya</term><term>microARN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Evolution, Molecular</term><term>Genes, Plant</term><term>Phylogeny</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Gènes de plante</term><term>Phylogenèse</term><term>Transcriptome</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>MicroRNA (miRNA) plays an important role in plant development regulation. Hickory is an economically important plant in which the amount of flowering determines its production.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Here, 51 conserved miRNAs, which belong to 16 families and 195 novel miRNAs were identified in hickory genome. For each conserved miRNA family, we used sequences from hickory and other plants to construct a phylogenetic tree, which shows that each family has members in hickory. Some of the conserved miRNA families (i.e., miR167 and miR397) have more members in hickory than in other plants because of gene expansion. MiR166 exhibited tandem duplication with three copies being observed. Many members of these conserved miRNA families were detected in hickory flowers, and the expression patterns of target genes were opposite to those of the related miRNAs, indicating that miRNAs may have important functions in floral regulation of hickory.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>Taken together, a comprehensive analysis was conducted to identify miRNAs produced in hickory flower organs, demonstrating functional conservation and diversity of miRNA families among hickory, Arabidopsis, grape, and poplar.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29187147</PMID><DateCompleted><Year>2018</Year><Month>05</Month><Day>22</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>Nov</Month><Day>29</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Genome-wide analysis of miRNAs in Carya cathayensis.</ArticleTitle><Pagination><MedlinePgn>228</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12870-017-1180-6</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">MicroRNA (miRNA) plays an important role in plant development regulation. Hickory is an economically important plant in which the amount of flowering determines its production.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Here, 51 conserved miRNAs, which belong to 16 families and 195 novel miRNAs were identified in hickory genome. For each conserved miRNA family, we used sequences from hickory and other plants to construct a phylogenetic tree, which shows that each family has members in hickory. Some of the conserved miRNA families (i.e., miR167 and miR397) have more members in hickory than in other plants because of gene expansion. MiR166 exhibited tandem duplication with three copies being observed. Many members of these conserved miRNA families were detected in hickory flowers, and the expression patterns of target genes were opposite to those of the related miRNAs, indicating that miRNAs may have important functions in floral regulation of hickory.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Taken together, a comprehensive analysis was conducted to identify miRNAs produced in hickory flower organs, demonstrating functional conservation and diversity of miRNA families among hickory, Arabidopsis, grape, and poplar.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Zhi-Chao</ForeName><Initials>ZC</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Liang-Sheng</ForeName><Initials>LS</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China. fafuzhang@163.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Center for Genomics and Biotechnology; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; Ministry of Education Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. fafuzhang@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Zheng-Jia</ForeName><Initials>ZJ</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China. wzhj21@163.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Forestry and Biotechnology, Zhejiang A and F University, Dong Hu Campus, 88 Northern Circle Road, Linan, 311300, China. wzhj21@163.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>LR14C160002</GrantID><Agency>Zhejiang Provincial Natural Science Foundation for Distinguished Young Scholars</Agency><Country></Country></Grant><Grant><GrantID>2013AA102605</GrantID><Agency>National High-Tech Research and Development Program of China</Agency><Country></Country></Grant><Grant><GrantID>31170637</GrantID><Agency>National Natural Science Foundation of China</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>11</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018749">RNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D031325" MajorTopicYN="N">Carya</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="Y">MicroRNAs</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018749" MajorTopicYN="Y">RNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Female flower</Keyword><Keyword MajorTopicYN="N">Hickory</Keyword><Keyword MajorTopicYN="N">Phylogenetic</Keyword><Keyword MajorTopicYN="N">Quantitative real-time PCR</Keyword><Keyword MajorTopicYN="N">miRNA</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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Zheng Jia" sort="Wang, Zheng Jia" uniqKey="Wang Z" first="Zheng-Jia" last="Wang">Zheng-Jia Wang</name><name sortKey="Zhang, Liang Sheng" sort="Zhang, Liang Sheng" uniqKey="Zhang L" first="Liang-Sheng" last="Zhang">Liang-Sheng Zhang</name><name sortKey="Zhang, Liang Sheng" sort="Zhang, Liang Sheng" uniqKey="Zhang L" first="Liang-Sheng" last="Zhang">Liang-Sheng Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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