The genome sequence of Condylorrhiza vestigialis NPV, a novel baculovirus for the control of the Alamo moth on Populus spp. in Brazil.
Identifieur interne : 001156 ( Main/Exploration ); précédent : 001155; suivant : 001157The genome sequence of Condylorrhiza vestigialis NPV, a novel baculovirus for the control of the Alamo moth on Populus spp. in Brazil.
Auteurs : Maria Elita B. Castro [Brésil] ; Fernando L. Melo [Brésil] ; Marina Tagliari [Brésil] ; Peter W. Inglis [Brésil] ; Saluana R. Craveiro [Brésil] ; Zilda Maria A. Ribeiro [Brésil] ; Bergmann M. Ribeiro [Brésil] ; Sônia N. Báo [Brésil]Source :
- Journal of invertebrate pathology [ 1096-0805 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Baculoviridae, Gènes viraux.
- microbiologie : Populus.
- méthodes : Lutte biologique contre les nuisibles.
- virologie : Papillons de nuit.
- Animaux, Brésil.
English descriptors
- KwdEn :
- MESH :
- genetics : Baculoviridae, Genes, Viral.
- methods : Pest Control, Biological.
- microbiology : Populus.
- virology : Moths.
- Animals, Brazil.
Abstract
Condylorrhiza vestigialis (Lepidoptera: Cambridae), commonly known as the Brazilian poplar moth or Alamo moth, is a serious defoliating pest of poplar, a crop of great economic importance for the production of wood, fiber, biofuel and other biomaterials as well as its significant ecological and environmental value. The complete genome sequence of a new alphabaculovirus isolated from C. vestigialis was determined and analyzed. Condylorrhiza vestigialis nucleopolyhedrovirus (CoveNPV) has a circular double-stranded DNA genome of 125,767bp with a GC content of 42.9%. One hundred and thirty-eight putative open reading frames were identified and annotated in the CoveNPV genome, including 38 core genes and 9 bros. Four homologous regions (hrs), a feature common to most baculoviruses, and 19 perfect and imperfect direct repeats (drs) were found. Phylogenetic analysis confirmed that CoveNPV is a Group I Alphabaculovirus and is most closely related to Anticarsia gemmatalis multiple nucleopolyhedrovirus (AgMNPV) and Choristoneura fumiferana DEF multiple nucleopolyhedrovirus CfDEFMNPV. The gp37 gene was not detected in the CoveNPV genome, although this gene is found in many NPVs. Two other common NPV genes, chitinase (v-chiA) and cathepsin (v-cath), that are responsible for host insect liquefaction and melanization, were also absent, where phylogenetic analysis suggests that the loss these genes occurred in the common ancestor of AgMNPV, CfDEFMNPV and CoveNPV, with subsequent reacquisition of these genes by CfDEFMNPV. The molecular biology and genetics of CoveNPV was formerly very little known and our expectation is that the findings presented here should accelerate research on this baculovirus, which will facilitate the use of CoveNPV in integrated pest management programs in Poplar crops.
DOI: 10.1016/j.jip.2017.06.013
PubMed: 28669710
Affiliations:
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Melo</name><affiliation wicri:level="2"><nlm:affiliation>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF</wicri:regionArea><placeName><region type="state">District fédéral (Brésil)</region></placeName></affiliation></author><author><name sortKey="Tagliari, Marina" sort="Tagliari, Marina" uniqKey="Tagliari M" first="Marina" last="Tagliari">Marina Tagliari</name><affiliation wicri:level="2"><nlm:affiliation>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil; Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil; Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF</wicri:regionArea><placeName><region type="state">District fédéral (Brésil)</region></placeName></affiliation></author><author><name sortKey="Inglis, Peter W" sort="Inglis, Peter W" uniqKey="Inglis P" first="Peter W" last="Inglis">Peter W. 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Ribeiro</name><affiliation wicri:level="2"><nlm:affiliation>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF</wicri:regionArea><placeName><region type="state">District fédéral (Brésil)</region></placeName></affiliation></author><author><name sortKey="Bao, Sonia N" sort="Bao, Sonia N" uniqKey="Bao S" first="Sônia N" last="Báo">Sônia N. Báo</name><affiliation wicri:level="2"><nlm:affiliation>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF</wicri:regionArea><placeName><region type="state">District fédéral (Brésil)</region></placeName></affiliation></author></analytic><series><title level="j">Journal of invertebrate pathology</title><idno type="eISSN">1096-0805</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Baculoviridae (genetics)</term><term>Brazil (MeSH)</term><term>Genes, Viral (genetics)</term><term>Moths (virology)</term><term>Pest Control, Biological (methods)</term><term>Populus (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term><term>Baculoviridae (génétique)</term><term>Brésil (MeSH)</term><term>Gènes viraux (génétique)</term><term>Lutte biologique contre les nuisibles (méthodes)</term><term>Papillons de nuit (virologie)</term><term>Populus (microbiologie)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Baculoviridae</term><term>Genes, Viral</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Baculoviridae</term><term>Gènes viraux</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Pest Control, Biological</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Lutte biologique contre les nuisibles</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Papillons de nuit</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Moths</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Brazil</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Brésil</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Condylorrhiza vestigialis (Lepidoptera: Cambridae), commonly known as the Brazilian poplar moth or Alamo moth, is a serious defoliating pest of poplar, a crop of great economic importance for the production of wood, fiber, biofuel and other biomaterials as well as its significant ecological and environmental value. The complete genome sequence of a new alphabaculovirus isolated from C. vestigialis was determined and analyzed. Condylorrhiza vestigialis nucleopolyhedrovirus (CoveNPV) has a circular double-stranded DNA genome of 125,767bp with a GC content of 42.9%. One hundred and thirty-eight putative open reading frames were identified and annotated in the CoveNPV genome, including 38 core genes and 9 bros. Four homologous regions (hrs), a feature common to most baculoviruses, and 19 perfect and imperfect direct repeats (drs) were found. Phylogenetic analysis confirmed that CoveNPV is a Group I Alphabaculovirus and is most closely related to Anticarsia gemmatalis multiple nucleopolyhedrovirus (AgMNPV) and Choristoneura fumiferana DEF multiple nucleopolyhedrovirus CfDEFMNPV. The gp37 gene was not detected in the CoveNPV genome, although this gene is found in many NPVs. Two other common NPV genes, chitinase (v-chiA) and cathepsin (v-cath), that are responsible for host insect liquefaction and melanization, were also absent, where phylogenetic analysis suggests that the loss these genes occurred in the common ancestor of AgMNPV, CfDEFMNPV and CoveNPV, with subsequent reacquisition of these genes by CfDEFMNPV. The molecular biology and genetics of CoveNPV was formerly very little known and our expectation is that the findings presented here should accelerate research on this baculovirus, which will facilitate the use of CoveNPV in integrated pest management programs in Poplar crops.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28669710</PMID><DateCompleted><Year>2018</Year><Month>05</Month><Day>15</Day></DateCompleted><DateRevised><Year>2018</Year><Month>05</Month><Day>31</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1096-0805</ISSN><JournalIssue CitedMedium="Internet"><Volume>148</Volume><PubDate><Year>2017</Year><Month>09</Month></PubDate></JournalIssue><Title>Journal of invertebrate pathology</Title><ISOAbbreviation>J Invertebr Pathol</ISOAbbreviation></Journal><ArticleTitle>The genome sequence of Condylorrhiza vestigialis NPV, a novel baculovirus for the control of the Alamo moth on Populus spp. in Brazil.</ArticleTitle><Pagination><MedlinePgn>152-161</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0022-2011(17)30127-1</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.jip.2017.06.013</ELocationID><Abstract><AbstractText>Condylorrhiza vestigialis (Lepidoptera: Cambridae), commonly known as the Brazilian poplar moth or Alamo moth, is a serious defoliating pest of poplar, a crop of great economic importance for the production of wood, fiber, biofuel and other biomaterials as well as its significant ecological and environmental value. The complete genome sequence of a new alphabaculovirus isolated from C. vestigialis was determined and analyzed. Condylorrhiza vestigialis nucleopolyhedrovirus (CoveNPV) has a circular double-stranded DNA genome of 125,767bp with a GC content of 42.9%. One hundred and thirty-eight putative open reading frames were identified and annotated in the CoveNPV genome, including 38 core genes and 9 bros. Four homologous regions (hrs), a feature common to most baculoviruses, and 19 perfect and imperfect direct repeats (drs) were found. Phylogenetic analysis confirmed that CoveNPV is a Group I Alphabaculovirus and is most closely related to Anticarsia gemmatalis multiple nucleopolyhedrovirus (AgMNPV) and Choristoneura fumiferana DEF multiple nucleopolyhedrovirus CfDEFMNPV. The gp37 gene was not detected in the CoveNPV genome, although this gene is found in many NPVs. Two other common NPV genes, chitinase (v-chiA) and cathepsin (v-cath), that are responsible for host insect liquefaction and melanization, were also absent, where phylogenetic analysis suggests that the loss these genes occurred in the common ancestor of AgMNPV, CfDEFMNPV and CoveNPV, with subsequent reacquisition of these genes by CfDEFMNPV. The molecular biology and genetics of CoveNPV was formerly very little known and our expectation is that the findings presented here should accelerate research on this baculovirus, which will facilitate the use of CoveNPV in integrated pest management programs in Poplar crops.</AbstractText><CopyrightInformation>Copyright © 2017 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Castro</LastName><ForeName>Maria Elita B</ForeName><Initials>MEB</Initials><AffiliationInfo><Affiliation>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil. Electronic address: elita.castro@embrapa.br.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Melo</LastName><ForeName>Fernando L</ForeName><Initials>FL</Initials><AffiliationInfo><Affiliation>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tagliari</LastName><ForeName>Marina</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil; Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Inglis</LastName><ForeName>Peter W</ForeName><Initials>PW</Initials><AffiliationInfo><Affiliation>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Craveiro</LastName><ForeName>Saluana R</ForeName><Initials>SR</Initials><AffiliationInfo><Affiliation>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil; Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ribeiro</LastName><ForeName>Zilda Maria A</ForeName><Initials>ZMA</Initials><AffiliationInfo><Affiliation>Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ribeiro</LastName><ForeName>Bergmann M</ForeName><Initials>BM</Initials><AffiliationInfo><Affiliation>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Báo</LastName><ForeName>Sônia N</ForeName><Initials>SN</Initials><AffiliationInfo><Affiliation>Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, Brazil.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>06</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>J Invertebr Pathol</MedlineTA><NlmUniqueID>0014067</NlmUniqueID><ISSNLinking>0022-2011</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016367" MajorTopicYN="N">Baculoviridae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001938" MajorTopicYN="N">Brazil</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005814" MajorTopicYN="N">Genes, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009036" MajorTopicYN="N">Moths</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010572" MajorTopicYN="N">Pest Control, Biological</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Baculovirus</Keyword><Keyword MajorTopicYN="Y">Biological control</Keyword><Keyword MajorTopicYN="Y">Condylorrhiza vestigialis NPV</Keyword><Keyword MajorTopicYN="Y">Genome sequence</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>03</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2017</Year><Month>06</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>06</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>7</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>5</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>7</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28669710</ArticleId><ArticleId IdType="pii">S0022-2011(17)30127-1</ArticleId><ArticleId IdType="doi">10.1016/j.jip.2017.06.013</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Brésil</li></country><region><li>District fédéral (Brésil)</li></region></list><tree><country name="Brésil"><region name="District fédéral (Brésil)"><name sortKey="Castro, Maria Elita B" sort="Castro, Maria Elita B" uniqKey="Castro M" first="Maria Elita B" last="Castro">Maria Elita B. Castro</name></region><name sortKey="Bao, Sonia N" sort="Bao, Sonia N" uniqKey="Bao S" first="Sônia N" last="Báo">Sônia N. Báo</name><name sortKey="Craveiro, Saluana R" sort="Craveiro, Saluana R" uniqKey="Craveiro S" first="Saluana R" last="Craveiro">Saluana R. Craveiro</name><name sortKey="Inglis, Peter W" sort="Inglis, Peter W" uniqKey="Inglis P" first="Peter W" last="Inglis">Peter W. Inglis</name><name sortKey="Melo, Fernando L" sort="Melo, Fernando L" uniqKey="Melo F" first="Fernando L" last="Melo">Fernando L. Melo</name><name sortKey="Ribeiro, Bergmann M" sort="Ribeiro, Bergmann M" uniqKey="Ribeiro B" first="Bergmann M" last="Ribeiro">Bergmann M. Ribeiro</name><name sortKey="Ribeiro, Zilda Maria A" sort="Ribeiro, Zilda Maria A" uniqKey="Ribeiro Z" first="Zilda Maria A" last="Ribeiro">Zilda Maria A. Ribeiro</name><name sortKey="Tagliari, Marina" sort="Tagliari, Marina" uniqKey="Tagliari M" first="Marina" last="Tagliari">Marina Tagliari</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001156 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001156 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:28669710
|texte= The genome sequence of Condylorrhiza vestigialis NPV, a novel baculovirus for the control of the Alamo moth on Populus spp. in Brazil.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:28669710" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |