PoplarV1, Main, Exploration, bibRecord, 000E81

Gene network analysis of poplar root transcriptome in response to drought stress identifies a PtaJAZ3PtaRAP2.6-centered hierarchical network.

Identifieur interne : 000E81 ( Main/Exploration ); précédent : 000E80; suivant : 000E82

Gene network analysis of poplar root transcriptome in response to drought stress identifies a PtaJAZ3PtaRAP2.6-centered hierarchical network.

Auteurs : Madhumita Dash [États-Unis] ; Yordan S. Yordanov [États-Unis] ; Tatyana Georgieva [États-Unis] ; Hairong Wei [États-Unis] ; Victor Busov [États-Unis]

Source :

PloS one [ 1932-6203 ] ; 2018.

RBID : pubmed:30540849

Descripteurs français

KwdFr :
- Acétates (pharmacologie), Algorithmes (MeSH), Cyclopentanes (pharmacologie), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Inhibiteurs du protéasome (pharmacologie), Oxylipines (pharmacologie), Polyéthylène glycols (pharmacologie), Populus (génétique), Populus (métabolisme), Protéines végétales (génétique), Protéines végétales (métabolisme), Racines de plante (croissance et développement), Racines de plante (génétique), Racines de plante (métabolisme), Régulation positive (effets des médicaments et des substances chimiques), Réseaux de régulation génique (effets des médicaments et des substances chimiques), Sécheresses (MeSH), Séquençage par oligonucléotides en batterie (MeSH), Transcriptome (effets des médicaments et des substances chimiques), Végétaux génétiquement modifiés (génétique), Végétaux génétiquement modifiés (métabolisme).
MESH :
- croissance et développement : Racines de plante.
- effets des médicaments et des substances chimiques : Régulation positive, Réseaux de régulation génique, Transcriptome.
- génétique : Facteurs de transcription, Populus, Protéines végétales, Racines de plante, Végétaux génétiquement modifiés.
- métabolisme : Facteurs de transcription, Populus, Protéines végétales, Racines de plante, Végétaux génétiquement modifiés.
- pharmacologie : Acétates, Cyclopentanes, Inhibiteurs du protéasome, Oxylipines, Polyéthylène glycols.
- Algorithmes, Sécheresses, Séquençage par oligonucléotides en batterie.

English descriptors

KwdEn :
- Acetates (pharmacology), Algorithms (MeSH), Cyclopentanes (pharmacology), Droughts (MeSH), Gene Regulatory Networks (drug effects), Oligonucleotide Array Sequence Analysis (MeSH), Oxylipins (pharmacology), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Roots (genetics), Plant Roots (growth & development), Plant Roots (metabolism), Plants, Genetically Modified (genetics), Plants, Genetically Modified (metabolism), Polyethylene Glycols (pharmacology), Populus (genetics), Populus (metabolism), Proteasome Inhibitors (pharmacology), Transcription Factors (genetics), Transcription Factors (metabolism), Transcriptome (drug effects), Up-Regulation (drug effects).
MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- chemical , metabolism : Plant Proteins, Transcription Factors.
- chemical , pharmacology : Acetates, Cyclopentanes, Oxylipins, Polyethylene Glycols, Proteasome Inhibitors.
- drug effects : Gene Regulatory Networks, Transcriptome, Up-Regulation.
- genetics : Plant Roots, Plants, Genetically Modified, Populus.
- growth & development : Plant Roots.
- metabolism : Plant Roots, Plants, Genetically Modified, Populus.
- Algorithms, Droughts, Oligonucleotide Array Sequence Analysis.

Abstract

Using time-series transcriptomic data from poplar roots undergoing polyethylene glycol (PEG)-induced drought stress, we built a genetic network model of the involved putative molecular responses. We found that the network resembled a hierarchical structure. The highest hierarchical level in this structure is occupied by 9 genes, which we called superhubs because they were primarily connected to 18 hub genes, which are then connected to 2,934 terminal genes. We were only able to regenerate transgenic plants overexpressing two of the superhubs, suggesting that the majority of the superhubs might interfere with the regeneration process and did not allow recovery of transgenic plants. The two superhubs encode proteins with closest homology to JAZ3 and RAP2.6 genes of Arabidopsis and were consequently named PtaJAZ3 and PtaRAP2.6. PtaJAZ3 and PtaRAP2.6 overexpressing transgenic lines showed a significant increase in both root elongation and lateral root proliferation and these responses were specific for the drought stress conditions and were highly correlated with the levels of overexpression of the transgenes. Several lines of evidence suggest of regulatory interactions between the two superhubs. Both superhubs were significantly induced by methyl jasmonate (MeJA). Because jasmonate signaling involves ubiquitin-mediated proteasome degradation, treatment with proteasome inhibitor abolished the MeJA induction for both genes. PtaRAP2.6 was upregulated in PtaJAZ3 transgenics but PtaJAZ3 expression was not affected in the PtaRAP2.6 overexpressors. The discovery of the two genes and further future insights into the associated mechanisms can lead to improved understanding and novel approaches to regulate root architecture in relation to drought stress.

DOI: 10.1371/journal.pone.0208560
PubMed: 30540849
PubMed Central: PMC6291141

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000B33
to stream Main, to step Curation: 000B33

Le document en format XML

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<term>Droughts (MeSH)</term>
<term>Gene Regulatory Networks (drug effects)</term>
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<term>Oxylipins (pharmacology)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
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<term>Plant Roots (growth & development)</term>
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<term>Facteurs de transcription (métabolisme)</term>
<term>Inhibiteurs du protéasome (pharmacologie)</term>
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<term>Polyéthylène glycols (pharmacologie)</term>
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<term>Réseaux de régulation génique (effets des médicaments et des substances chimiques)</term>
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<term>Séquençage par oligonucléotides en batterie (MeSH)</term>
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<term>Oxylipins</term>
<term>Polyethylene Glycols</term>
<term>Proteasome Inhibitors</term>
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<front><div type="abstract" xml:lang="en">Using time-series transcriptomic data from poplar roots undergoing polyethylene glycol (PEG)-induced drought stress, we built a genetic network model of the involved putative molecular responses. We found that the network resembled a hierarchical structure. The highest hierarchical level in this structure is occupied by 9 genes, which we called superhubs because they were primarily connected to 18 hub genes, which are then connected to 2,934 terminal genes. We were only able to regenerate transgenic plants overexpressing two of the superhubs, suggesting that the majority of the superhubs might interfere with the regeneration process and did not allow recovery of transgenic plants. The two superhubs encode proteins with closest homology to JAZ3 and RAP2.6 genes of Arabidopsis and were consequently named PtaJAZ3 and PtaRAP2.6. PtaJAZ3 and PtaRAP2.6 overexpressing transgenic lines showed a significant increase in both root elongation and lateral root proliferation and these responses were specific for the drought stress conditions and were highly correlated with the levels of overexpression of the transgenes. Several lines of evidence suggest of regulatory interactions between the two superhubs. Both superhubs were significantly induced by methyl jasmonate (MeJA). Because jasmonate signaling involves ubiquitin-mediated proteasome degradation, treatment with proteasome inhibitor abolished the MeJA induction for both genes. PtaRAP2.6 was upregulated in PtaJAZ3 transgenics but PtaJAZ3 expression was not affected in the PtaRAP2.6 overexpressors. The discovery of the two genes and further future insights into the associated mechanisms can lead to improved understanding and novel approaches to regulate root architecture in relation to drought stress.</div>
</front>
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<Abstract><AbstractText>Using time-series transcriptomic data from poplar roots undergoing polyethylene glycol (PEG)-induced drought stress, we built a genetic network model of the involved putative molecular responses. We found that the network resembled a hierarchical structure. The highest hierarchical level in this structure is occupied by 9 genes, which we called superhubs because they were primarily connected to 18 hub genes, which are then connected to 2,934 terminal genes. We were only able to regenerate transgenic plants overexpressing two of the superhubs, suggesting that the majority of the superhubs might interfere with the regeneration process and did not allow recovery of transgenic plants. The two superhubs encode proteins with closest homology to JAZ3 and RAP2.6 genes of Arabidopsis and were consequently named PtaJAZ3 and PtaRAP2.6. PtaJAZ3 and PtaRAP2.6 overexpressing transgenic lines showed a significant increase in both root elongation and lateral root proliferation and these responses were specific for the drought stress conditions and were highly correlated with the levels of overexpression of the transgenes. Several lines of evidence suggest of regulatory interactions between the two superhubs. Both superhubs were significantly induced by methyl jasmonate (MeJA). Because jasmonate signaling involves ubiquitin-mediated proteasome degradation, treatment with proteasome inhibitor abolished the MeJA induction for both genes. PtaRAP2.6 was upregulated in PtaJAZ3 transgenics but PtaJAZ3 expression was not affected in the PtaRAP2.6 overexpressors. The discovery of the two genes and further future insights into the associated mechanisms can lead to improved understanding and novel approaches to regulate root architecture in relation to drought stress.</AbstractText>
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Gene network analysis of poplar root transcriptome in response to drought stress identifies a PtaJAZ3PtaRAP2.6-centered hierarchical network.

Gene network analysis of poplar root transcriptome in response to drought stress identifies a PtaJAZ3PtaRAP2.6-centered hierarchical network.

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