Serveur d'exploration sur le peuplier

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.

Identifieur interne : 000E56 ( Main/Exploration ); précédent : 000E55; suivant : 000E57

Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.

Auteurs : Can Chen [République populaire de Chine] ; Nusratgul Anwar [République populaire de Chine] ; Chen Wu [République populaire de Chine] ; Geyi Fu [République populaire de Chine] ; Ruijun Wang [République populaire de Chine] ; Choangya Zhang [République populaire de Chine] ; Yuehong Wu [République populaire de Chine] ; Cong Sun [République populaire de Chine] ; Min Wu [République populaire de Chine]

Source :

RBID : pubmed:29561252

Descripteurs français

English descriptors

Abstract

A Gram-stain-negative, aerobic, motile and rod-shaped bacterium, designated MC28T, was isolated from storage liquid collected from the stems of Populus euphratica in the Xinjiang province of China. The growth range of NaCl concentration was 0.5-6.0 % (w/v), with an optimum at 3.0 % (w/v), the temperature range for growth was 10-45 °C, with an optimum at 40 °C, and the pH range for growth was 6.0-9.0, with an optimum around pH 8.5. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain MC28T formed a distinct lineage in the clade of genus Halomonas and is closely related to Halomonas desiderata DSM 9502T (96.4 %), Halomonas heilongjiangensis DSM 26881T (96.2 %) and Halomonas urumqiensis JCM 30202T (95.2 %). The average nucleotide identity, average amino acid identity and in silico DNA-DNA hybridization values between strain MC28T and the references strains were 77.2-80.3, 65.8-76.8 and 21.6-25.6 %, respectively. Chemotaxonomic analysis indicated that the main respiratory quinones were Q-9 and Q-8, the predominant cellular fatty acids were summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 1ω9c, C16 : 0 and C17 : 1ω9c, the major polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, phosphatidylinositol, phosphatidylinositol mannoside, an aminophospholipid, an unidentified phospholipid, an unidentified aminolipid and two unidentified lipids. Based on its phenotypic, chemotaxonomic and phylogenetic characteristics, strain MC28T is considered to represent a novel species, for which the name Halomonas endophytica sp. nov. is proposed. The type strain is MC28T (=KCTC 52999T=MCCC 1K03343T).

DOI: 10.1099/ijsem.0.002585
PubMed: 29561252


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.</title>
<author>
<name sortKey="Chen, Can" sort="Chen, Can" uniqKey="Chen C" first="Can" last="Chen">Can Chen</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Anwar, Nusratgul" sort="Anwar, Nusratgul" uniqKey="Anwar N" first="Nusratgul" last="Anwar">Nusratgul Anwar</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Life Sciences and Technology, Xinjiang University, Urumqi 830001, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences and Technology, Xinjiang University, Urumqi 830001</wicri:regionArea>
<wicri:noRegion>Urumqi 830001</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Chen" sort="Wu, Chen" uniqKey="Wu C" first="Chen" last="Wu">Chen Wu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zhejiang University of Water Resources and Electric Power, Hangzhou 310058, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Zhejiang University of Water Resources and Electric Power, Hangzhou 310058</wicri:regionArea>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Fu, Geyi" sort="Fu, Geyi" uniqKey="Fu G" first="Geyi" last="Fu">Geyi Fu</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wang, Ruijun" sort="Wang, Ruijun" uniqKey="Wang R" first="Ruijun" last="Wang">Ruijun Wang</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Choangya" sort="Zhang, Choangya" uniqKey="Zhang C" first="Choangya" last="Zhang">Choangya Zhang</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Yuehong" sort="Wu, Yuehong" uniqKey="Wu Y" first="Yuehong" last="Wu">Yuehong Wu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012</wicri:regionArea>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Sun, Cong" sort="Sun, Cong" uniqKey="Sun C" first="Cong" last="Sun">Cong Sun</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018</wicri:regionArea>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2018">2018</date>
<idno type="RBID">pubmed:29561252</idno>
<idno type="pmid">29561252</idno>
<idno type="doi">10.1099/ijsem.0.002585</idno>
<idno type="wicri:Area/Main/Corpus">000F14</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000F14</idno>
<idno type="wicri:Area/Main/Curation">000F14</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000F14</idno>
<idno type="wicri:Area/Main/Exploration">000F14</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.</title>
<author>
<name sortKey="Chen, Can" sort="Chen, Can" uniqKey="Chen C" first="Can" last="Chen">Can Chen</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Anwar, Nusratgul" sort="Anwar, Nusratgul" uniqKey="Anwar N" first="Nusratgul" last="Anwar">Nusratgul Anwar</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Life Sciences and Technology, Xinjiang University, Urumqi 830001, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences and Technology, Xinjiang University, Urumqi 830001</wicri:regionArea>
<wicri:noRegion>Urumqi 830001</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Chen" sort="Wu, Chen" uniqKey="Wu C" first="Chen" last="Wu">Chen Wu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zhejiang University of Water Resources and Electric Power, Hangzhou 310058, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Zhejiang University of Water Resources and Electric Power, Hangzhou 310058</wicri:regionArea>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Fu, Geyi" sort="Fu, Geyi" uniqKey="Fu G" first="Geyi" last="Fu">Geyi Fu</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wang, Ruijun" sort="Wang, Ruijun" uniqKey="Wang R" first="Ruijun" last="Wang">Ruijun Wang</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Choangya" sort="Zhang, Choangya" uniqKey="Zhang C" first="Choangya" last="Zhang">Choangya Zhang</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Yuehong" sort="Wu, Yuehong" uniqKey="Wu Y" first="Yuehong" last="Wu">Yuehong Wu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012</wicri:regionArea>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Sun, Cong" sort="Sun, Cong" uniqKey="Sun C" first="Cong" last="Sun">Cong Sun</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018</wicri:regionArea>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name>
<affiliation wicri:level="4">
<nlm:affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Ocean College, Zhejiang University, Zhoushan 316000</wicri:regionArea>
<orgName type="university">Université de Zhejiang</orgName>
<placeName>
<settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">International journal of systematic and evolutionary microbiology</title>
<idno type="eISSN">1466-5034</idno>
<imprint>
<date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Halomonas (classification)</term>
<term>Halomonas (genetics)</term>
<term>Halomonas (isolation & purification)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Stems (microbiology)</term>
<term>Populus (microbiology)</term>
<term>Quinones (chemistry)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Halomonas (classification)</term>
<term>Halomonas (génétique)</term>
<term>Halomonas (isolement et purification)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Quinones (composition chimique)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Tiges de plante (microbiologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>Fatty Acids</term>
<term>Phospholipids</term>
<term>Quinones</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Halomonas</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr">
<term>Acides gras</term>
<term>Halomonas</term>
<term>Phospholipides</term>
<term>Quinones</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Halomonas</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Halomonas</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Halomonas</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Halomonas</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Populus</term>
<term>Tiges de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Plant Stems</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>China</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Hybridation d'acides nucléiques</term>
<term>Phylogenèse</term>
<term>Techniques de typage bactérien</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">A Gram-stain-negative, aerobic, motile and rod-shaped bacterium, designated MC28
<sup>T</sup>
, was isolated from storage liquid collected from the stems of Populus euphratica in the Xinjiang province of China. The growth range of NaCl concentration was 0.5-6.0 % (w/v), with an optimum at 3.0 % (w/v), the temperature range for growth was 10-45 °C, with an optimum at 40 °C, and the pH range for growth was 6.0-9.0, with an optimum around pH 8.5. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain MC28
<sup>T</sup>
formed a distinct lineage in the clade of genus Halomonas and is closely related to Halomonas desiderata DSM 9502
<sup>T</sup>
(96.4 %), Halomonas heilongjiangensis DSM 26881
<sup>T</sup>
(96.2 %) and Halomonas urumqiensis JCM 30202
<sup>T</sup>
(95.2 %). The average nucleotide identity, average amino acid identity and in silico DNA-DNA hybridization values between strain MC28
<sup>T</sup>
and the references strains were 77.2-80.3, 65.8-76.8 and 21.6-25.6 %, respectively. Chemotaxonomic analysis indicated that the main respiratory quinones were Q-9 and Q-8, the predominant cellular fatty acids were summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 1ω9c, C16 : 0 and C17 : 1ω9c, the major polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, phosphatidylinositol, phosphatidylinositol mannoside, an aminophospholipid, an unidentified phospholipid, an unidentified aminolipid and two unidentified lipids. Based on its phenotypic, chemotaxonomic and phylogenetic characteristics, strain MC28
<sup>T</sup>
is considered to represent a novel species, for which the name Halomonas endophytica sp. nov. is proposed. The type strain is MC28
<sup>T</sup>
(=KCTC 52999
<sup>T</sup>
=MCCC 1K03343
<sup>T</sup>
).</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM">
<PMID Version="1">29561252</PMID>
<DateCompleted>
<Year>2018</Year>
<Month>05</Month>
<Day>23</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>12</Month>
<Day>11</Day>
</DateRevised>
<Article PubModel="Print-Electronic">
<Journal>
<ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>68</Volume>
<Issue>5</Issue>
<PubDate>
<Year>2018</Year>
<Month>May</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.</ArticleTitle>
<Pagination>
<MedlinePgn>1633-1638</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.002585</ELocationID>
<Abstract>
<AbstractText>A Gram-stain-negative, aerobic, motile and rod-shaped bacterium, designated MC28
<sup>T</sup>
, was isolated from storage liquid collected from the stems of Populus euphratica in the Xinjiang province of China. The growth range of NaCl concentration was 0.5-6.0 % (w/v), with an optimum at 3.0 % (w/v), the temperature range for growth was 10-45 °C, with an optimum at 40 °C, and the pH range for growth was 6.0-9.0, with an optimum around pH 8.5. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain MC28
<sup>T</sup>
formed a distinct lineage in the clade of genus Halomonas and is closely related to Halomonas desiderata DSM 9502
<sup>T</sup>
(96.4 %), Halomonas heilongjiangensis DSM 26881
<sup>T</sup>
(96.2 %) and Halomonas urumqiensis JCM 30202
<sup>T</sup>
(95.2 %). The average nucleotide identity, average amino acid identity and in silico DNA-DNA hybridization values between strain MC28
<sup>T</sup>
and the references strains were 77.2-80.3, 65.8-76.8 and 21.6-25.6 %, respectively. Chemotaxonomic analysis indicated that the main respiratory quinones were Q-9 and Q-8, the predominant cellular fatty acids were summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 1ω9c, C16 : 0 and C17 : 1ω9c, the major polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, phosphatidylinositol, phosphatidylinositol mannoside, an aminophospholipid, an unidentified phospholipid, an unidentified aminolipid and two unidentified lipids. Based on its phenotypic, chemotaxonomic and phylogenetic characteristics, strain MC28
<sup>T</sup>
is considered to represent a novel species, for which the name Halomonas endophytica sp. nov. is proposed. The type strain is MC28
<sup>T</sup>
(=KCTC 52999
<sup>T</sup>
=MCCC 1K03343
<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Chen</LastName>
<ForeName>Can</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Anwar</LastName>
<ForeName>Nusratgul</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>College of Life Sciences and Technology, Xinjiang University, Urumqi 830001, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wu</LastName>
<ForeName>Chen</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Zhejiang University of Water Resources and Electric Power, Hangzhou 310058, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fu</LastName>
<ForeName>Geyi</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Ruijun</ForeName>
<Initials>R</Initials>
<AffiliationInfo>
<Affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zhang</LastName>
<ForeName>Choangya</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wu</LastName>
<ForeName>Yuehong</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sun</LastName>
<ForeName>Cong</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wu</LastName>
<ForeName>Min</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Ocean College, Zhejiang University, Zhoushan 316000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2018</Year>
<Month>03</Month>
<Day>21</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D011809">Quinones</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020632" MajorTopicYN="N">Halomonas</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011809" MajorTopicYN="N">Quinones</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Halomonas endophytica sp. nov.</Keyword>
<Keyword MajorTopicYN="N">polyphasic taxonomy</Keyword>
<Keyword MajorTopicYN="N">storage liquid from Populus euphratica</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="pubmed">
<Year>2018</Year>
<Month>3</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2018</Year>
<Month>5</Month>
<Day>24</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2018</Year>
<Month>3</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">29561252</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002585</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
<region>
<li>Zhejiang</li>
</region>
<settlement>
<li>Hangzhou</li>
</settlement>
<orgName>
<li>Université de Zhejiang</li>
</orgName>
</list>
<tree>
<country name="République populaire de Chine">
<region name="Zhejiang">
<name sortKey="Chen, Can" sort="Chen, Can" uniqKey="Chen C" first="Can" last="Chen">Can Chen</name>
</region>
<name sortKey="Anwar, Nusratgul" sort="Anwar, Nusratgul" uniqKey="Anwar N" first="Nusratgul" last="Anwar">Nusratgul Anwar</name>
<name sortKey="Fu, Geyi" sort="Fu, Geyi" uniqKey="Fu G" first="Geyi" last="Fu">Geyi Fu</name>
<name sortKey="Sun, Cong" sort="Sun, Cong" uniqKey="Sun C" first="Cong" last="Sun">Cong Sun</name>
<name sortKey="Wang, Ruijun" sort="Wang, Ruijun" uniqKey="Wang R" first="Ruijun" last="Wang">Ruijun Wang</name>
<name sortKey="Wu, Chen" sort="Wu, Chen" uniqKey="Wu C" first="Chen" last="Wu">Chen Wu</name>
<name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name>
<name sortKey="Wu, Yuehong" sort="Wu, Yuehong" uniqKey="Wu Y" first="Yuehong" last="Wu">Yuehong Wu</name>
<name sortKey="Zhang, Choangya" sort="Zhang, Choangya" uniqKey="Zhang C" first="Choangya" last="Zhang">Choangya Zhang</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000E56 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000E56 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:29561252
   |texte=   Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:29561252" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020