Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli.
Identifieur interne : 000C67 ( Main/Exploration ); précédent : 000C66; suivant : 000C68Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli.
Auteurs : Mohnad Abdalla [Soudan] ; Wafa Ali Eltayb ; Amr Ahmed El-Arabey ; Raihan Mo ; T I M. Dafaalla [Soudan] ; Hamed I. Hamouda ; Eijaz Ahmed Bhat ; Annoor Awadasseid [République populaire de Chine] ; Hassan Abdellha Ahmed Ali [Soudan]Source :
- Genes and environment : the official journal of the Japanese Environmental Mutagen Society [ 1880-7046 ] ; 2018.
Abstract
Background
Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif.
Results
Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO
Conclusions
In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast.
DOI: 10.1186/s41021-018-0103-6
PubMed: 30123389
PubMed Central: PMC6091153
Affiliations:
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Dafaalla</name><affiliation wicri:level="1"><nlm:affiliation>5College of Education, Sinnar University, 11147 Sinnar, Sudan.</nlm:affiliation><country xml:lang="fr">Soudan</country><wicri:regionArea>5College of Education, Sinnar University, 11147 Sinnar</wicri:regionArea><wicri:noRegion>11147 Sinnar</wicri:noRegion></affiliation></author><author><name sortKey="Hamouda, Hamed I" sort="Hamouda, Hamed I" uniqKey="Hamouda H" first="Hamed I" last="Hamouda">Hamed I. Hamouda</name><affiliation><nlm:affiliation>3Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao Shi, Shandong Sheng 266000 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Shandong Sheng 266000 People's Republic of China</wicri:noCountry></affiliation></author><author><name sortKey="Bhat, Eijaz Ahmed" sort="Bhat, Eijaz Ahmed" uniqKey="Bhat E" first="Eijaz Ahmed" last="Bhat">Eijaz Ahmed Bhat</name><affiliation><nlm:affiliation>School of Biotechnology and Graduate School of Biochemistry, Yeungnam, 280, Daehak-ro, Gyeongsan-si, Gyeongsangbuk-do 712-749 South Korea.</nlm:affiliation><wicri:noCountry code="subField">Gyeongsangbuk-do 712-749 South Korea</wicri:noCountry></affiliation></author><author><name sortKey="Awadasseid, Annoor" sort="Awadasseid, Annoor" uniqKey="Awadasseid A" first="Annoor" last="Awadasseid">Annoor Awadasseid</name><affiliation wicri:level="1"><nlm:affiliation>7Department of Biochemistry and Molecular Biology, Dalian Medical University, Dalian, 116044 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>7Department of Biochemistry and Molecular Biology, Dalian Medical University, Dalian</wicri:regionArea><wicri:noRegion>Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Ali, Hassan Abdellha Ahmed" sort="Ali, Hassan Abdellha Ahmed" uniqKey="Ali H" first="Hassan Abdellha Ahmed" last="Ali">Hassan Abdellha Ahmed Ali</name><affiliation wicri:level="1"><nlm:affiliation>8Faculty of Medicine, Nile Valley University, Atbara, Sudan.</nlm:affiliation><country xml:lang="fr">Soudan</country><wicri:regionArea>8Faculty of Medicine, Nile Valley University, Atbara</wicri:regionArea><wicri:noRegion>Atbara</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:30123389</idno><idno type="pmid">30123389</idno><idno 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Khartoum</wicri:regionArea><wicri:noRegion>Khartoum</wicri:noRegion></affiliation><affiliation><nlm:affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Anhui 230027 People's Republic of China</wicri:noCountry></affiliation><affiliation><nlm:affiliation>3Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao Shi, Shandong Sheng 266000 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Shandong Sheng 266000 People's Republic of China</wicri:noCountry></affiliation></author><author><name sortKey="Eltayb, Wafa Ali" sort="Eltayb, Wafa Ali" uniqKey="Eltayb W" first="Wafa Ali" last="Eltayb">Wafa Ali Eltayb</name><affiliation><nlm:affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Anhui 230027 People's Republic of China</wicri:noCountry></affiliation><affiliation><nlm:affiliation>4Faculty of Science and Technology, Shendi University, Shendi, Nher Anile Sudan.</nlm:affiliation><wicri:noCountry code="subField">Nher Anile Sudan</wicri:noCountry></affiliation></author><author><name sortKey="El Arabey, Amr Ahmed" sort="El Arabey, Amr Ahmed" uniqKey="El Arabey A" first="Amr Ahmed" last="El-Arabey">Amr Ahmed El-Arabey</name><affiliation><nlm:affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Anhui 230027 People's Republic of China</wicri:noCountry></affiliation></author><author><name sortKey="Mo, Raihan" sort="Mo, Raihan" uniqKey="Mo R" first="Raihan" last="Mo">Raihan Mo</name><affiliation><nlm:affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Anhui 230027 People's Republic of China</wicri:noCountry></affiliation></author><author><name sortKey="Dafaalla, T I M" sort="Dafaalla, T I M" uniqKey="Dafaalla T" first="T I M" last="Dafaalla">T I M. Dafaalla</name><affiliation wicri:level="1"><nlm:affiliation>5College of Education, Sinnar University, 11147 Sinnar, Sudan.</nlm:affiliation><country xml:lang="fr">Soudan</country><wicri:regionArea>5College of Education, Sinnar University, 11147 Sinnar</wicri:regionArea><wicri:noRegion>11147 Sinnar</wicri:noRegion></affiliation></author><author><name sortKey="Hamouda, Hamed I" sort="Hamouda, Hamed I" uniqKey="Hamouda H" first="Hamed I" last="Hamouda">Hamed I. Hamouda</name><affiliation><nlm:affiliation>3Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao Shi, Shandong Sheng 266000 People's Republic of China.</nlm:affiliation><wicri:noCountry code="subField">Shandong Sheng 266000 People's Republic of China</wicri:noCountry></affiliation></author><author><name sortKey="Bhat, Eijaz Ahmed" sort="Bhat, Eijaz Ahmed" uniqKey="Bhat E" first="Eijaz Ahmed" last="Bhat">Eijaz Ahmed Bhat</name><affiliation><nlm:affiliation>School of Biotechnology and Graduate School of Biochemistry, Yeungnam, 280, Daehak-ro, Gyeongsan-si, Gyeongsangbuk-do 712-749 South Korea.</nlm:affiliation><wicri:noCountry code="subField">Gyeongsangbuk-do 712-749 South Korea</wicri:noCountry></affiliation></author><author><name sortKey="Awadasseid, Annoor" sort="Awadasseid, Annoor" uniqKey="Awadasseid A" first="Annoor" last="Awadasseid">Annoor Awadasseid</name><affiliation wicri:level="1"><nlm:affiliation>7Department of Biochemistry and Molecular Biology, Dalian Medical University, Dalian, 116044 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>7Department of Biochemistry and Molecular Biology, Dalian Medical University, Dalian</wicri:regionArea><wicri:noRegion>Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Ali, Hassan Abdellha Ahmed" sort="Ali, Hassan Abdellha Ahmed" uniqKey="Ali H" first="Hassan Abdellha Ahmed" last="Ali">Hassan Abdellha Ahmed Ali</name><affiliation wicri:level="1"><nlm:affiliation>8Faculty of Medicine, Nile Valley University, Atbara, Sudan.</nlm:affiliation><country xml:lang="fr">Soudan</country><wicri:regionArea>8Faculty of Medicine, Nile Valley University, Atbara</wicri:regionArea><wicri:noRegion>Atbara</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genes and environment : the official journal of the Japanese Environmental Mutagen Society</title><idno type="ISSN">1880-7046</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>Background</b></p><p>Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif.</p></div><div type="abstract" xml:lang="en"><p><b>Results</b></p><p>Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO</p></div><div type="abstract" xml:lang="en"><p><b>Conclusions</b></p><p>In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast.</p></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30123389</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1880-7046</ISSN><JournalIssue CitedMedium="Print"><Volume>40</Volume><PubDate><Year>2018</Year></PubDate></JournalIssue><Title>Genes and environment : the official journal of the Japanese Environmental Mutagen Society</Title><ISOAbbreviation>Genes Environ</ISOAbbreviation></Journal><ArticleTitle>Structure analysis of yeast glutaredoxin Grx6 protein produced in <i>Escherichia coli</i>.</ArticleTitle><Pagination><MedlinePgn>15</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s41021-018-0103-6</ELocationID><Abstract><AbstractText Label="Background" NlmCategory="UNASSIGNED">Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif.</AbstractText><AbstractText Label="Results" NlmCategory="UNASSIGNED">Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO<sub>4</sub>·7H<sub>2</sub>O and (NH<sub>4</sub>)<sub>2</sub>Fe(SO<sub>4</sub>)<sub>2</sub>·6H<sub>2</sub>O, a disulfide bond was formed between the cysteine 136 and glutathione, and the concentration of dimer and tetramer was increased. The results presented various levels of stability of Grx6 with mutant and deleted amino acids. We also highlighted the difference between the monomer and dimer forms of the Grx6, in addition to comparison of the Fe-S cluster positions among holo forms of poplar Grx-C1, human Grx2 and <i>Saccharomyces cerevisiae</i> Grx6.</AbstractText><AbstractText Label="Conclusions" NlmCategory="UNASSIGNED">In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y" EqualContrib="Y"><LastName>Abdalla</LastName><ForeName>Mohnad</ForeName><Initials>M</Initials><Identifier Source="ORCID">0000-0002-1682-5547</Identifier><AffiliationInfo><Affiliation>1Faculty of Science and Technology, Omdurman Islamic University, Khartoum, Sudan.</Affiliation><Identifier Source="GRID">grid.442422.6</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000000121679639</Identifier><Identifier Source="GRID">grid.59053.3a</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>3Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao Shi, Shandong Sheng 266000 People's Republic of China.</Affiliation><Identifier Source="GRID">grid.458500.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y" EqualContrib="Y"><LastName>Eltayb</LastName><ForeName>Wafa Ali</ForeName><Initials>WA</Initials><AffiliationInfo><Affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000000121679639</Identifier><Identifier Source="GRID">grid.59053.3a</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>4Faculty of Science and Technology, Shendi University, Shendi, Nher Anile Sudan.</Affiliation><Identifier Source="GRID">grid.442427.3</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>El-Arabey</LastName><ForeName>Amr Ahmed</ForeName><Initials>AA</Initials><AffiliationInfo><Affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000000121679639</Identifier><Identifier Source="GRID">grid.59053.3a</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mo</LastName><ForeName>Raihan</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>2School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000000121679639</Identifier><Identifier Source="GRID">grid.59053.3a</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dafaalla</LastName><ForeName>T I M</ForeName><Initials>TIM</Initials><AffiliationInfo><Affiliation>5College of Education, Sinnar University, 11147 Sinnar, Sudan.</Affiliation><Identifier Source="GRID">grid.442429.d</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hamouda</LastName><ForeName>Hamed I</ForeName><Initials>HI</Initials><AffiliationInfo><Affiliation>3Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao Shi, Shandong Sheng 266000 People's Republic of China.</Affiliation><Identifier Source="GRID">grid.458500.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bhat</LastName><ForeName>Eijaz Ahmed</ForeName><Initials>EA</Initials><AffiliationInfo><Affiliation>School of Biotechnology and Graduate School of Biochemistry, Yeungnam, 280, Daehak-ro, Gyeongsan-si, Gyeongsangbuk-do 712-749 South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Awadasseid</LastName><ForeName>Annoor</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>7Department of Biochemistry and Molecular Biology, Dalian Medical University, Dalian, 116044 China.</Affiliation><Identifier Source="ISNI">0000 0000 9558 1426</Identifier><Identifier Source="GRID">grid.411971.b</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ali</LastName><ForeName>Hassan Abdellha Ahmed</ForeName><Initials>HAA</Initials><AffiliationInfo><Affiliation>8Faculty of Medicine, Nile Valley University, Atbara, Sudan.</Affiliation><Identifier Source="GRID">grid.442375.3</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>08</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Genes Environ</MedlineTA><NlmUniqueID>101285347</NlmUniqueID><ISSNLinking>1880-7046</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Crystallization</Keyword><Keyword MajorTopicYN="N">Fe-S</Keyword><Keyword MajorTopicYN="N">Grx6</Keyword><Keyword MajorTopicYN="N">Purification</Keyword><Keyword MajorTopicYN="N">Saccharomyces cerevisiae</Keyword></KeywordList><CoiStatement>Not applicable Not applicable The authors declare that they have no competing interests. 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Ahmed" last="Bhat">Eijaz Ahmed Bhat</name><name sortKey="El Arabey, Amr Ahmed" sort="El Arabey, Amr Ahmed" uniqKey="El Arabey A" first="Amr Ahmed" last="El-Arabey">Amr Ahmed El-Arabey</name><name sortKey="Eltayb, Wafa Ali" sort="Eltayb, Wafa Ali" uniqKey="Eltayb W" first="Wafa Ali" last="Eltayb">Wafa Ali Eltayb</name><name sortKey="Hamouda, Hamed I" sort="Hamouda, Hamed I" uniqKey="Hamouda H" first="Hamed I" last="Hamouda">Hamed I. Hamouda</name><name sortKey="Mo, Raihan" sort="Mo, Raihan" uniqKey="Mo R" first="Raihan" last="Mo">Raihan Mo</name></noCountry><country name="Soudan"><noRegion><name sortKey="Abdalla, Mohnad" sort="Abdalla, Mohnad" uniqKey="Abdalla M" first="Mohnad" last="Abdalla">Mohnad Abdalla</name></noRegion><name sortKey="Ali, Hassan Abdellha Ahmed" sort="Ali, Hassan Abdellha Ahmed" uniqKey="Ali H" first="Hassan Abdellha Ahmed" last="Ali">Hassan Abdellha Ahmed Ali</name><name sortKey="Dafaalla, T I M" sort="Dafaalla, T I M" uniqKey="Dafaalla T" first="T I M" last="Dafaalla">T I M. Dafaalla</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Awadasseid, Annoor" sort="Awadasseid, Annoor" uniqKey="Awadasseid A" first="Annoor" last="Awadasseid">Annoor Awadasseid</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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