Evolutionary Divergence of Duplicated Hsf Genes in Populus.
Identifieur interne : 000974 ( Main/Exploration ); précédent : 000973; suivant : 000975Evolutionary Divergence of Duplicated Hsf Genes in Populus.
Auteurs : Bobin Liu [République populaire de Chine] ; Jianjun Hu [République populaire de Chine] ; Jin Zhang [République populaire de Chine, États-Unis]Source :
- Cells [ 2073-4409 ] ; 2019.
Descripteurs français
- KwdFr :
- Amérique du Nord (MeSH), Duplication de gène (MeSH), Facteurs de transcription de choc thermique (composition chimique), Facteurs de transcription de choc thermique (génétique), Famille multigénique (MeSH), Gènes de plante (MeSH), Gènes dupliqués (MeSH), Génome végétal (MeSH), Phylogenèse (MeSH), Polymorphisme de nucléotide simple (MeSH), Populus (génétique), Protéines végétales (composition chimique), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (MeSH), Épissage alternatif (MeSH), Évolution biologique (MeSH).
- MESH :
- composition chimique : Facteurs de transcription de choc thermique, Protéines végétales.
- génétique : Facteurs de transcription de choc thermique, Populus, Protéines végétales.
- Amérique du Nord, Duplication de gène, Famille multigénique, Gènes de plante, Gènes dupliqués, Génome végétal, Phylogenèse, Polymorphisme de nucléotide simple, Régulation de l'expression des gènes végétaux, Épissage alternatif, Évolution biologique.
English descriptors
- KwdEn :
- Alternative Splicing (MeSH), Biological Evolution (MeSH), Gene Duplication (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Duplicate (MeSH), Genes, Plant (MeSH), Genome, Plant (MeSH), Heat Shock Transcription Factors (chemistry), Heat Shock Transcription Factors (genetics), Multigene Family (MeSH), North America (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Polymorphism, Single Nucleotide (MeSH), Populus (genetics).
- MESH :
- chemical , chemistry : Heat Shock Transcription Factors, Plant Proteins.
- chemical , genetics : Heat Shock Transcription Factors, Plant Proteins.
- geographic : North America.
- genetics : Populus.
- Alternative Splicing, Biological Evolution, Gene Duplication, Gene Expression Regulation, Plant, Genes, Duplicate, Genes, Plant, Genome, Plant, Multigene Family, Phylogeny, Polymorphism, Single Nucleotide.
Abstract
Heat shock transcription factors (Hsfs), which function as the activator of heat shock proteins (Hsps), play multiple roles in response to environmental stress and the development of plants. The Hsf family had experienced gene expansion via whole-genome duplication from a single cell algae to higher plants. However, how the Hsf gene family went through evolutionary divergence after genome duplication is unknown. As a model wood species, Populus trichocarpa is widely distributed in North America with various ecological and climatic environments. In this study, we used P. trichocarpa as materials and identified the expression divergence of the PtHsf gene family in developmental processes, such as dormant bud formation and opening, catkins development, and in response to environments. Through the co-expression network, we further discovered the divergent co-expressed genes that related to the functional divergence of PtHsfs. Then, we studied the alternative splicing events, single nucleotide polymorphism distribution and tertiary structures of members of the PtHsf gene family. In addition to expression divergence, we uncovered the evolutionary divergence in the protein level which may be important to new function formations and for survival in changing environments. This study comprehensively analyzed the evolutionary divergence of a member of the PtHsf gene family after genome duplication, paving the way for further gene function analysis and genetic engineering.
DOI: 10.3390/cells8050438
PubMed: 31083365
PubMed Central: PMC6563006
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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l'expression des gènes végétaux</term><term>Épissage alternatif</term><term>Évolution biologique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Heat shock transcription factors (Hsfs), which function as the activator of heat shock proteins (Hsps), play multiple roles in response to environmental stress and the development of plants. The Hsf family had experienced gene expansion via whole-genome duplication from a single cell algae to higher plants. However, how the Hsf gene family went through evolutionary divergence after genome duplication is unknown. As a model wood species, <i>Populus trichocarpa</i> is widely distributed in North America with various ecological and climatic environments. In this study, we used <i>P. trichocarpa</i> as materials and identified the expression divergence of the <i>PtHsf</i> gene family in developmental processes, such as dormant bud formation and opening, catkins development, and in response to environments. Through the co-expression network, we further discovered the divergent co-expressed genes that related to the functional divergence of <i>PtHsfs</i>. Then, we studied the alternative splicing events, single nucleotide polymorphism distribution and tertiary structures of members of the <i>PtHsf</i> gene family. In addition to expression divergence, we uncovered the evolutionary divergence in the protein level which may be important to new function formations and for survival in changing environments. This study comprehensively analyzed the evolutionary divergence of a member of the <i>PtHsf</i> gene family after genome duplication, paving the way for further gene function analysis and genetic engineering.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31083365</PMID><DateCompleted><Year>2020</Year><Month>01</Month><Day>06</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2073-4409</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>5</Issue><PubDate><Year>2019</Year><Month>05</Month><Day>10</Day></PubDate></JournalIssue><Title>Cells</Title><ISOAbbreviation>Cells</ISOAbbreviation></Journal><ArticleTitle>Evolutionary Divergence of Duplicated <i>Hsf</i> Genes in <i>Populus</i>.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E438</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/cells8050438</ELocationID><Abstract><AbstractText>Heat shock transcription factors (Hsfs), which function as the activator of heat shock proteins (Hsps), play multiple roles in response to environmental stress and the development of plants. The Hsf family had experienced gene expansion via whole-genome duplication from a single cell algae to higher plants. However, how the Hsf gene family went through evolutionary divergence after genome duplication is unknown. As a model wood species, <i>Populus trichocarpa</i> is widely distributed in North America with various ecological and climatic environments. In this study, we used <i>P. trichocarpa</i> as materials and identified the expression divergence of the <i>PtHsf</i> gene family in developmental processes, such as dormant bud formation and opening, catkins development, and in response to environments. Through the co-expression network, we further discovered the divergent co-expressed genes that related to the functional divergence of <i>PtHsfs</i>. Then, we studied the alternative splicing events, single nucleotide polymorphism distribution and tertiary structures of members of the <i>PtHsf</i> gene family. In addition to expression divergence, we uncovered the evolutionary divergence in the protein level which may be important to new function formations and for survival in changing environments. This study comprehensively analyzed the evolutionary divergence of a member of the <i>PtHsf</i> gene family after genome duplication, paving the way for further gene function analysis and genetic engineering.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Bobin</ForeName><Initials>B</Initials><Identifier Source="ORCID">0000-0001-7133-6888</Identifier><AffiliationInfo><Affiliation>College of Forestry, Fujian Colleges and Universities Engineering Research Institute of Conservation & Utilization of Natural Bioresources, Fujian Agriculture and Forestry University, Fuzhou 350002, China. liubobin@fafu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Jianjun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China. hujj@caf.ac.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jin</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0002-8397-5078</Identifier><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China. zhangj1@ornl.gov.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA. zhangj1@ornl.gov.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>05</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Cells</MedlineTA><NlmUniqueID>101600052</NlmUniqueID><ISSNLinking>2073-4409</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000076249">Heat Shock Transcription Factors</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017398" MajorTopicYN="N">Alternative Splicing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005075" MajorTopicYN="N">Biological Evolution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020131" MajorTopicYN="N">Genes, Duplicate</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000076249" MajorTopicYN="Y">Heat Shock Transcription Factors</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009656" MajorTopicYN="N" Type="Geographic">North America</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="Y">Plant Proteins</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Populus</Keyword><Keyword MajorTopicYN="Y">alternative splicing</Keyword><Keyword MajorTopicYN="Y">co-expression network</Keyword><Keyword MajorTopicYN="Y">gene duplication</Keyword><Keyword MajorTopicYN="Y">gene expression</Keyword><Keyword MajorTopicYN="Y">heat shock transcription factors</Keyword><Keyword MajorTopicYN="Y">protein structure</Keyword><Keyword MajorTopicYN="Y">single nucleotide polymorphism</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>04</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>05</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>05</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31083365</ArticleId><ArticleId 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Chine</li><li>États-Unis</li></country><region><li>Fujian</li><li>Tennessee</li></region><settlement><li>Fuzhou</li><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><region name="Fujian"><name sortKey="Liu, Bobin" sort="Liu, Bobin" uniqKey="Liu B" first="Bobin" last="Liu">Bobin Liu</name></region><name sortKey="Hu, Jianjun" sort="Hu, Jianjun" uniqKey="Hu J" first="Jianjun" last="Hu">Jianjun Hu</name><name sortKey="Zhang, Jin" sort="Zhang, Jin" uniqKey="Zhang J" first="Jin" last="Zhang">Jin Zhang</name></country><country name="États-Unis"><region name="Tennessee"><name sortKey="Zhang, Jin" sort="Zhang, Jin" uniqKey="Zhang J" first="Jin" last="Zhang">Jin Zhang</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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