PoplarV1, Main, Exploration, bibRecord, 000903

Identification and characterization of Populus microRNAs in response to plant growth-promoting endophytic Streptomyces sp. SSD49.

Identifieur interne : 000903 ( Main/Exploration ); précédent : 000902; suivant : 000904

Identification and characterization of Populus microRNAs in response to plant growth-promoting endophytic Streptomyces sp. SSD49.

Auteurs : Wenjia Tian [République populaire de Chine] ; Youyou Ge [République populaire de Chine] ; Xiaoyu Liu [République populaire de Chine] ; Guiming Dou [République populaire de Chine] ; Yuchao Ma [République populaire de Chine]

Source :

World journal of microbiology & biotechnology [ 1573-0972 ] ; 2019.

RBID : pubmed:31222457

Descripteurs français

KwdFr :
- ARN des plantes (génétique), ARN des plantes (isolement et purification), ARN ribosomique 16S (génétique), ARN ribosomique 16S (isolement et purification), Agents de lutte biologique (MeSH), Analyse de séquence d'ARN (MeSH), Banque de gènes (MeSH), Conformation d'acide nucléique (MeSH), Facteur de croissance végétal (MeSH), Populus (génétique), Populus (microbiologie), Populus (métabolisme), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Streptomyces (métabolisme), Séquençage nucléotidique à haut débit (MeSH), microARN (génétique), microARN (métabolisme).
MESH :
- génétique : ARN des plantes, ARN ribosomique 16S, Populus, Protéines végétales, microARN.
- isolement et purification : ARN des plantes, ARN ribosomique 16S.
- microbiologie : Populus.
- métabolisme : Populus, Protéines végétales, Streptomyces, microARN.
- Agents de lutte biologique, Analyse de séquence d'ARN, Banque de gènes, Conformation d'acide nucléique, Facteur de croissance végétal, Régulation de l'expression des gènes végétaux, Séquençage nucléotidique à haut débit.

English descriptors

KwdEn :
- Biological Control Agents (MeSH), Gene Expression Regulation, Plant (MeSH), Gene Library (MeSH), High-Throughput Nucleotide Sequencing (MeSH), MicroRNAs (genetics), MicroRNAs (metabolism), Nucleic Acid Conformation (MeSH), Plant Growth Regulators (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (genetics), Populus (metabolism), Populus (microbiology), RNA, Plant (genetics), RNA, Plant (isolation & purification), RNA, Ribosomal, 16S (genetics), RNA, Ribosomal, 16S (isolation & purification), Sequence Analysis, RNA (MeSH), Streptomyces (metabolism).
MESH :
- chemical , genetics : MicroRNAs, Plant Proteins, RNA, Plant, RNA, Ribosomal, 16S.
- chemical , isolation & purification : RNA, Plant, RNA, Ribosomal, 16S.
- chemical , metabolism : MicroRNAs, Plant Proteins.
- chemical : Biological Control Agents, Plant Growth Regulators.
- genetics : Populus.
- metabolism : Populus, Streptomyces.
- microbiology : Populus.
- Gene Expression Regulation, Plant, Gene Library, High-Throughput Nucleotide Sequencing, Nucleic Acid Conformation, Sequence Analysis, RNA.

Abstract

Endophytic Streptomyces sp. SSD49 inhibited eight pathogens, including the human opportunistic pathogenic microorganisms, the plant pathogenic fungi and bacteria. The growth of soybeans, tomatoes, peppers and Populus tomentosa seedings inoculated with SSD49 are remarkably promoted. Here, we constructed two P. tomentosa seedling microRNA (miRNA) libraries inoculated with (PS30d) and without SSD49 (PC30d) to explore the molecular regulatory roles in the plant response to the beneficial bacteria. Totals of 314 known and 144 novel miRNAs were identified, among which 27 known and 11 novel miRNA had significantly different expression. The targets of up-regulated miR160, miR156, ptc114 and down-regulated miR319 and other differential expressed miRNAs primarily regulated genes encoding transcription factors (auxin response factor, small auxin-up RNA, and GRAS proteins), disease resistance proteins, phytohormone oxidase, and response regulators, which could promote plant growth, influence disease resistance and miRNA biosynthesis in P. tomentosa. This is the first report on the genome-wide identification of biocontrol endophytic Streptomyces inoculation-responsive miRNAs using small RNA sequencing in P. tomentosa and these findings provide new insight into understanding the biocontrol effects of endophytic Streptomyces.

DOI: 10.1007/s11274-019-2671-4
PubMed: 31222457

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000830
to stream Main, to step Curation: 000830

Le document en format XML

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<front><div type="abstract" xml:lang="en">Endophytic Streptomyces sp. SSD49 inhibited eight pathogens, including the human opportunistic pathogenic microorganisms, the plant pathogenic fungi and bacteria. The growth of soybeans, tomatoes, peppers and Populus tomentosa seedings inoculated with SSD49 are remarkably promoted. Here, we constructed two P. tomentosa seedling microRNA (miRNA) libraries inoculated with (PS30d) and without SSD49 (PC30d) to explore the molecular regulatory roles in the plant response to the beneficial bacteria. Totals of 314 known and 144 novel miRNAs were identified, among which 27 known and 11 novel miRNA had significantly different expression. The targets of up-regulated miR160, miR156, ptc114 and down-regulated miR319 and other differential expressed miRNAs primarily regulated genes encoding transcription factors (auxin response factor, small auxin-up RNA, and GRAS proteins), disease resistance proteins, phytohormone oxidase, and response regulators, which could promote plant growth, influence disease resistance and miRNA biosynthesis in P. tomentosa. This is the first report on the genome-wide identification of biocontrol endophytic Streptomyces inoculation-responsive miRNAs using small RNA sequencing in P. tomentosa and these findings provide new insight into understanding the biocontrol effects of endophytic Streptomyces.</div>
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<Abstract><AbstractText>Endophytic Streptomyces sp. SSD49 inhibited eight pathogens, including the human opportunistic pathogenic microorganisms, the plant pathogenic fungi and bacteria. The growth of soybeans, tomatoes, peppers and Populus tomentosa seedings inoculated with SSD49 are remarkably promoted. Here, we constructed two P. tomentosa seedling microRNA (miRNA) libraries inoculated with (PS30d) and without SSD49 (PC30d) to explore the molecular regulatory roles in the plant response to the beneficial bacteria. Totals of 314 known and 144 novel miRNAs were identified, among which 27 known and 11 novel miRNA had significantly different expression. The targets of up-regulated miR160, miR156, ptc114 and down-regulated miR319 and other differential expressed miRNAs primarily regulated genes encoding transcription factors (auxin response factor, small auxin-up RNA, and GRAS proteins), disease resistance proteins, phytohormone oxidase, and response regulators, which could promote plant growth, influence disease resistance and miRNA biosynthesis in P. tomentosa. This is the first report on the genome-wide identification of biocontrol endophytic Streptomyces inoculation-responsive miRNAs using small RNA sequencing in P. tomentosa and these findings provide new insight into understanding the biocontrol effects of endophytic Streptomyces.</AbstractText>
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Identification and characterization of Populus microRNAs in response to plant growth-promoting endophytic Streptomyces sp. SSD49.

Identification and characterization of Populus microRNAs in response to plant growth-promoting endophytic Streptomyces sp. SSD49.

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