Sphingomonas corticis sp. nov., and Sphingobacterium corticibacterium sp. nov., from bark canker.
Identifieur interne : 000606 ( Main/Exploration ); précédent : 000605; suivant : 000607Sphingomonas corticis sp. nov., and Sphingobacterium corticibacterium sp. nov., from bark canker.
Auteurs : Yong Li [République populaire de Chine] ; Shengkun Wang [République populaire de Chine] ; Ju-Pu Chang [République populaire de Chine] ; Dan-Ran Bian [République populaire de Chine] ; Li-Min Guo [République populaire de Chine] ; Xu-Qi Yang [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2020.
Abstract
Two Gram-stain-negative, aerobic, non-motile bacterial strains, 36D10-4-7T and 30C10-4-7T, were isolated from bark canker tissue of Populus × euramericana, respectively. 16S rRNA gene sequence analysis revealed that strain 36D10-4-7T shows 98.0 % sequence similarity to Sphingomonas adhaesiva DSM 7418T, and strain 30C10-4-7T shows highest sequence similarity to Sphingobacterium arenae H-12T (95.6 %). Average nucleotide identity analysis indicates that strain 36D10-4-7T is a novel member different from recognized species in the genus Sphingomonas. The main fatty acids and respiratory quinone detected in strain 36D10-4-7T are C18 : 1 ω7c and/or C18 : 1 ω6c and Q-10, respectively. The polar lipids are diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, aminolipid, phosphatidylethanolamine, sphingoglycolipid, two uncharacterized phospholipids and two uncharacterized lipids. For strain 30C10-4-7T, the major fatty acids and menaquinone are iso-C15 : 0, C16 : 1 ω7c and/or C16 : 1 ω6c and iso-C17 : 0 3-OH and MK-7, respectively. The polar lipid profile includes phosphatidylethanolamine, phospholipids, two aminophospholipids and six unidentified lipids. Based on phenotypic and genotypic characteristics, these two strains represent two novel species within the genera Sphingomonas and Sphingobacterium. The name Sphingomonas corticis sp. nov. (type strain 36D10-4-7T=CFCC 13112T=KCTC 52799T) and Sphingobacterium corticibacterium sp. nov. (type strain 30C10-4-7T=CFCC 13069T=KCTC 52797T) are proposed.
DOI: 10.1099/ijsem.0.004451
PubMed: 32924914
Affiliations:
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457000</wicri:noRegion></affiliation></author><author><name sortKey="Bian, Dan Ran" sort="Bian, Dan Ran" uniqKey="Bian D" first="Dan-Ran" last="Bian">Dan-Ran Bian</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name><affiliation wicri:level="1"><nlm:affiliation>Puyang Academy of 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Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Shengkun" sort="Wang, Shengkun" uniqKey="Wang S" first="Shengkun" last="Wang">Shengkun Wang</name><affiliation wicri:level="1"><nlm:affiliation>Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name><affiliation wicri:level="1"><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Bian, Dan Ran" sort="Bian, Dan Ran" uniqKey="Bian D" first="Dan-Ran" last="Bian">Dan-Ran Bian</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name><affiliation wicri:level="1"><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name><affiliation wicri:level="1"><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Two Gram-stain-negative, aerobic, non-motile bacterial strains, 36D10-4-7<sup>T</sup> and 30C10-4-7<sup>T</sup>, were isolated from bark canker tissue of <i>Populus × euramericana</i>, respectively. 16S rRNA gene sequence analysis revealed that strain 36D10-4-7<sup>T</sup> shows 98.0 % sequence similarity to <i>Sphingomonas adhaesiva</i> DSM 7418<sup>T</sup>, and strain 30C10-4-7<sup>T</sup> shows highest sequence similarity to <i>Sphingobacterium arenae</i> H-12<sup>T</sup> (95.6 %). Average nucleotide identity analysis indicates that strain 36D10-4-7<sup>T</sup> is a novel member different from recognized species in the genus <i>Sphingomonas</i>. The main fatty acids and respiratory quinone detected in strain 36D10-4-7<sup>T</sup> are C<sub>18 : 1</sub><i> ω</i>7<i>c</i> and/or C<sub>18 : 1</sub><i> ω</i>6<i>c</i> and Q-10, respectively. The polar lipids are diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, aminolipid, phosphatidylethanolamine, sphingoglycolipid, two uncharacterized phospholipids and two uncharacterized lipids. For strain 30C10-4-7<sup>T</sup>, the major fatty acids and menaquinone are iso-C<sub>15 : 0</sub>, C<sub>16 : 1</sub><i> ω</i>7<i>c</i> and/or C<sub>16 : 1</sub><i> ω</i>6<i>c</i> and iso-C<sub>17 : 0</sub> 3-OH and MK-7, respectively. The polar lipid profile includes phosphatidylethanolamine, phospholipids, two aminophospholipids and six unidentified lipids. Based on phenotypic and genotypic characteristics, these two strains represent two novel species within the genera <i>Sphingomonas</i> and <i>Sphingobacterium</i>. The name <i>Sphingomonas corticis</i> sp. nov. (type strain 36D10-4-7<sup>T</sup>=CFCC 13112<sup>T</sup>=KCTC 52799<sup>T</sup>) and <i>Sphingobacterium corticibacterium</i> sp. nov. (type strain 30C10-4-7<sup>T</sup>=CFCC 13069<sup>T</sup>=KCTC 52797<sup>T</sup>) are proposed.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">32924914</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>14</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Sep</Month><Day>14</Day></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle><i>Sphingomonas corticis</i> sp. nov., and <i>Sphingobacterium corticibacterium</i> sp. nov., from bark canker.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.004451</ELocationID><Abstract><AbstractText>Two Gram-stain-negative, aerobic, non-motile bacterial strains, 36D10-4-7<sup>T</sup> and 30C10-4-7<sup>T</sup>, were isolated from bark canker tissue of <i>Populus × euramericana</i>, respectively. 16S rRNA gene sequence analysis revealed that strain 36D10-4-7<sup>T</sup> shows 98.0 % sequence similarity to <i>Sphingomonas adhaesiva</i> DSM 7418<sup>T</sup>, and strain 30C10-4-7<sup>T</sup> shows highest sequence similarity to <i>Sphingobacterium arenae</i> H-12<sup>T</sup> (95.6 %). Average nucleotide identity analysis indicates that strain 36D10-4-7<sup>T</sup> is a novel member different from recognized species in the genus <i>Sphingomonas</i>. The main fatty acids and respiratory quinone detected in strain 36D10-4-7<sup>T</sup> are C<sub>18 : 1</sub><i> ω</i>7<i>c</i> and/or C<sub>18 : 1</sub><i> ω</i>6<i>c</i> and Q-10, respectively. The polar lipids are diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, aminolipid, phosphatidylethanolamine, sphingoglycolipid, two uncharacterized phospholipids and two uncharacterized lipids. For strain 30C10-4-7<sup>T</sup>, the major fatty acids and menaquinone are iso-C<sub>15 : 0</sub>, C<sub>16 : 1</sub><i> ω</i>7<i>c</i> and/or C<sub>16 : 1</sub><i> ω</i>6<i>c</i> and iso-C<sub>17 : 0</sub> 3-OH and MK-7, respectively. The polar lipid profile includes phosphatidylethanolamine, phospholipids, two aminophospholipids and six unidentified lipids. Based on phenotypic and genotypic characteristics, these two strains represent two novel species within the genera <i>Sphingomonas</i> and <i>Sphingobacterium</i>. The name <i>Sphingomonas corticis</i> sp. nov. (type strain 36D10-4-7<sup>T</sup>=CFCC 13112<sup>T</sup>=KCTC 52799<sup>T</sup>) and <i>Sphingobacterium corticibacterium</i> sp. nov. (type strain 30C10-4-7<sup>T</sup>=CFCC 13069<sup>T</sup>=KCTC 52797<sup>T</sup>) are proposed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Shengkun</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chang</LastName><ForeName>Ju-Pu</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bian</LastName><ForeName>Dan-Ran</ForeName><Initials>DR</Initials><AffiliationInfo><Affiliation>Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Li-Min</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Xu-Qi</ForeName><Initials>XQ</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Sphingobacterium</Keyword><Keyword MajorTopicYN="N">Sphingomonas</Keyword><Keyword MajorTopicYN="N">bark canker</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>14</Day><Hour>15</Hour><Minute>41</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>9</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>9</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32924914</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.004451</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Guangdong</li></region><settlement><li>Jiangmen</li><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name></noRegion><name sortKey="Bian, Dan Ran" sort="Bian, Dan Ran" uniqKey="Bian D" first="Dan-Ran" last="Bian">Dan-Ran Bian</name><name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name><name sortKey="Wang, Shengkun" sort="Wang, Shengkun" uniqKey="Wang S" first="Shengkun" last="Wang">Shengkun Wang</name><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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