Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.
Identifieur interne : 000604 ( Main/Exploration ); précédent : 000603; suivant : 000605Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.
Auteurs : Panpan Liu [République populaire de Chine] ; Zhanfeng Xia [République populaire de Chine] ; Lili Zhang [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2020.
Abstract
A novel actinobacterial strain (TRM 68085T) was isolated from soil of Populus euphratica wetland. A polyphasic approach was used to study the taxonomy of TRM 68085T and the results showed a range of phylogenetic and chemotaxonomic properties consistent with those of the genus Streptomyces. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain TRM 68085T showed the highest similarity value to Streptomyces capitiformicae 1H-SSA4T (98.6 %), and phylogenetically clustered with Streptomyces kanasensis ZX01T(97.5 %) and Streptomyces ipomoeae NBRC 13050T (97.4 %). The genomic DNA G+C content of strain TRM 68085T based on the genome sequence was 71.4 mol%. The levels of DNA-DNA relatedness between the genome of the isolate and its nearest phylogenetic neighbours, S. capitiformicae 1H-SSA4T, S. kanasensis ZX01T and S. ipomoeae NBRC 13050T, were 19.2±0.4, 21.8±0.5 and 19.3±0.6 %, respectively. Chemotaxonomic data revealed that strain TRM 68085T possessed MK-9(H6) and MK-9(H8) as the predominant menaquinones. ll-Diaminopimelic acid and a small amount of meso-diaminopimelic acid were the diagnostic diamino acids. Ribose, xylose, glucose and galactose were the whole-cell sugars. The major cellular fatty acids were C16 : 0 (25.4 %) and iso-C16 : 0 (18.3 %). On the basis of these genotypic and phenotypic data, it is concluded that strain TRM 68085T represents a novel species of the genus Streptomyces, for which the name Streptomyces arboris sp. nov. is proposed. The type strain is TRM 68085T (=CCTCC AA2019031T=LMG 31492T).
DOI: 10.1099/ijsem.0.004430
PubMed: 32941129
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Xia</name><affiliation wicri:level="1"><nlm:affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Lili" sort="Zhang, Lili" uniqKey="Zhang L" first="Lili" last="Zhang">Lili Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</nlm:affiliation><country 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nov., isolated from <i>Populus euphratica</i> wetland soil.</title><author><name sortKey="Liu, Panpan" sort="Liu, Panpan" uniqKey="Liu P" first="Panpan" last="Liu">Panpan Liu</name><affiliation wicri:level="1"><nlm:affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author><author><name sortKey="Xia, Zhanfeng" sort="Xia, Zhanfeng" uniqKey="Xia Z" first="Zhanfeng" last="Xia">Zhanfeng Xia</name><affiliation wicri:level="1"><nlm:affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Lili" sort="Zhang, Lili" uniqKey="Zhang L" first="Lili" last="Zhang">Lili Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A novel actinobacterial strain (TRM 68085<sup>T</sup>) was isolated from soil of <i>Populus euphratica</i> wetland. A polyphasic approach was used to study the taxonomy of TRM 68085<sup>T</sup> and the results showed a range of phylogenetic and chemotaxonomic properties consistent with those of the genus <i>Streptomyces</i>. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain TRM 68085<sup>T</sup> showed the highest similarity value to <i>Streptomyces capitiformicae</i> 1H-SSA4<sup>T</sup> (98.6 %), and phylogenetically clustered with <i>Streptomyces kanasensis</i> ZX01<sup>T</sup>(97.5 %) and <i>Streptomyces ipomoeae</i> NBRC 13050<sup>T</sup> (97.4 %). The genomic DNA G+C content of strain TRM 68085<sup>T</sup> based on the genome sequence was 71.4 mol%. The levels of DNA-DNA relatedness between the genome of the isolate and its nearest phylogenetic neighbours, <i>S. capitiformicae</i> 1H-SSA4<sup>T</sup>, <i>S. kanasensis</i> ZX01<sup>T</sup> and <i>S. ipomoeae</i> NBRC 13050<sup>T</sup>, were 19.2±0.4, 21.8±0.5 and 19.3±0.6 %, respectively. Chemotaxonomic data revealed that strain TRM 68085<sup>T</sup> possessed MK-9(H<sub>6</sub>) and MK-9(H<sub>8</sub>) as the predominant menaquinones. ll-Diaminopimelic acid and a small amount of <i>meso</i>-diaminopimelic acid were the diagnostic diamino acids. Ribose, xylose, glucose and galactose were the whole-cell sugars. The major cellular fatty acids were C<sub>16 : 0</sub> (25.4 %) and iso-C<sub>16 : 0</sub> (18.3 %). On the basis of these genotypic and phenotypic data, it is concluded that strain TRM 68085<sup>T</sup> represents a novel species of the genus <i>Streptomyces</i>, for which the name <i>Streptomyces arboris</i> sp. nov. is proposed. The type strain is TRM 68085<sup>T</sup> (=CCTCC AA2019031<sup>T</sup>=LMG 31492<sup>T</sup>).</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">32941129</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>17</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Sep</Month><Day>17</Day></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle><i>Streptomyces arboris</i> sp. nov., isolated from <i>Populus euphratica</i> wetland soil.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.004430</ELocationID><Abstract><AbstractText>A novel actinobacterial strain (TRM 68085<sup>T</sup>) was isolated from soil of <i>Populus euphratica</i> wetland. A polyphasic approach was used to study the taxonomy of TRM 68085<sup>T</sup> and the results showed a range of phylogenetic and chemotaxonomic properties consistent with those of the genus <i>Streptomyces</i>. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain TRM 68085<sup>T</sup> showed the highest similarity value to <i>Streptomyces capitiformicae</i> 1H-SSA4<sup>T</sup> (98.6 %), and phylogenetically clustered with <i>Streptomyces kanasensis</i> ZX01<sup>T</sup>(97.5 %) and <i>Streptomyces ipomoeae</i> NBRC 13050<sup>T</sup> (97.4 %). The genomic DNA G+C content of strain TRM 68085<sup>T</sup> based on the genome sequence was 71.4 mol%. The levels of DNA-DNA relatedness between the genome of the isolate and its nearest phylogenetic neighbours, <i>S. capitiformicae</i> 1H-SSA4<sup>T</sup>, <i>S. kanasensis</i> ZX01<sup>T</sup> and <i>S. ipomoeae</i> NBRC 13050<sup>T</sup>, were 19.2±0.4, 21.8±0.5 and 19.3±0.6 %, respectively. Chemotaxonomic data revealed that strain TRM 68085<sup>T</sup> possessed MK-9(H<sub>6</sub>) and MK-9(H<sub>8</sub>) as the predominant menaquinones. ll-Diaminopimelic acid and a small amount of <i>meso</i>-diaminopimelic acid were the diagnostic diamino acids. Ribose, xylose, glucose and galactose were the whole-cell sugars. The major cellular fatty acids were C<sub>16 : 0</sub> (25.4 %) and iso-C<sub>16 : 0</sub> (18.3 %). On the basis of these genotypic and phenotypic data, it is concluded that strain TRM 68085<sup>T</sup> represents a novel species of the genus <i>Streptomyces</i>, for which the name <i>Streptomyces arboris</i> sp. nov. is proposed. The type strain is TRM 68085<sup>T</sup> (=CCTCC AA2019031<sup>T</sup>=LMG 31492<sup>T</sup>).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Panpan</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xia</LastName><ForeName>Zhanfeng</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Lili</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin/College of Life Science, Tarim University, Alar 843300, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus euphratica</Keyword><Keyword MajorTopicYN="N">Streptomyces</Keyword><Keyword MajorTopicYN="N">chemotaxonomic</Keyword><Keyword MajorTopicYN="N">gene</Keyword><Keyword MajorTopicYN="N">phylogenetic</Keyword><Keyword MajorTopicYN="N">strain</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>17</Day><Hour>17</Hour><Minute>16</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>9</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>9</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32941129</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.004430</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Panpan" sort="Liu, Panpan" uniqKey="Liu P" first="Panpan" last="Liu">Panpan Liu</name></noRegion><name sortKey="Xia, Zhanfeng" sort="Xia, Zhanfeng" uniqKey="Xia Z" first="Zhanfeng" last="Xia">Zhanfeng Xia</name><name sortKey="Zhang, Lili" sort="Zhang, Lili" uniqKey="Zhang L" first="Lili" last="Zhang">Lili Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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