Distinctive Gene Expression Profiles and Effectors Consistent With Host Specificity in Two Formae Speciales of Marssonina brunnea.
Identifieur interne : 000473 ( Main/Exploration ); précédent : 000472; suivant : 000474Distinctive Gene Expression Profiles and Effectors Consistent With Host Specificity in Two Formae Speciales of Marssonina brunnea.
Auteurs : Fei Ren [République populaire de Chine] ; Dong-Hui Yan [République populaire de Chine] ; Guanghua Wu [République populaire de Chine] ; Xiaoming Sun [République populaire de Chine] ; Xiaoyu Song [République populaire de Chine] ; Ruhua Li [République populaire de Chine]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2020.
Abstract
The knowledge on the host specificity of a pathogen underlying an interaction is becoming an urgent necessity for global warming. In this study, the gene expression profiles and the roles of effectors in host specificity were integrally characterized with two formae speciales, multigermtubi and monogermtubi, of a hemibiotrophic pathogen Marssonina brunnea when they were infecting respective susceptible poplar hosts. With a functional genome comparison referring to a de novo transcriptome of M. brunnea and Pathogen-Host Interaction database functional annotations, the multigermtubi strain showed abundant and significant differentially expressed unigenes (DEGs) (more than 40%) in colonizing the initial invasion stage and in the necrotrophic stage. The monogermtubi strain induced less than 10% of DEGs in the initial invasion stage but which abruptly increased to more than 80% DEGs in the necrotrophic stage. Both strains induced the least DEGs in the biotrophic stage compared to the initial invasion and necrotrophic stages. The orthologs of the effector genes Ecp6, PemG1, XEG1, ACE1, and Mg3LysM were exclusively induced by one of the two formae speciales depending on the infection stages. Some unigenes homologous to carbohydrate lytic enzyme genes, especially pectate lyases, were notably induced with multigermtubi forma specialis infection but not expressed in the monogermtubi forma specialis at an earlier infection stage. The extraordinary differences in the functional genome level between the two formae speciales of M. brunnea could be fundamental to exploring their host specificity determinant and evolution. This study also firstly provided the fungal transcriptome of the monogermtubi forma specialis for M. brunnea.
DOI: 10.3389/fmicb.2020.00276
PubMed: 32210930
PubMed Central: PMC7076119
Affiliations:
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Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Institute of Cereal & Oil Science and Technology, Academy of National Food and Strategic Reserves Administration, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Cereal & Oil Science and Technology, Academy of National Food and Strategic Reserves Administration, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yan, Dong Hui" sort="Yan, Dong Hui" uniqKey="Yan D" first="Dong-Hui" last="Yan">Dong-Hui Yan</name><affiliation wicri:level="3"><nlm:affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wu, Guanghua" sort="Wu, Guanghua" uniqKey="Wu G" first="Guanghua" last="Wu">Guanghua Wu</name><affiliation wicri:level="3"><nlm:affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Xiaoming" sort="Sun, Xiaoming" uniqKey="Sun X" first="Xiaoming" last="Sun">Xiaoming Sun</name><affiliation wicri:level="3"><nlm:affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Song, Xiaoyu" sort="Song, Xiaoyu" uniqKey="Song X" first="Xiaoyu" last="Song">Xiaoyu Song</name><affiliation wicri:level="3"><nlm:affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Li, Ruhua" sort="Li, Ruhua" uniqKey="Li R" first="Ruhua" last="Li">Ruhua Li</name><affiliation wicri:level="3"><nlm:affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The knowledge on the host specificity of a pathogen underlying an interaction is becoming an urgent necessity for global warming. In this study, the gene expression profiles and the roles of effectors in host specificity were integrally characterized with two formae speciales, multigermtubi and monogermtubi, of a hemibiotrophic pathogen <i>Marssonina brunnea</i> when they were infecting respective susceptible poplar hosts. With a functional genome comparison referring to a <i>de novo</i> transcriptome of <i>M. brunnea</i> and Pathogen-Host Interaction database functional annotations, the multigermtubi strain showed abundant and significant differentially expressed unigenes (DEGs) (more than 40%) in colonizing the initial invasion stage and in the necrotrophic stage. The monogermtubi strain induced less than 10% of DEGs in the initial invasion stage but which abruptly increased to more than 80% DEGs in the necrotrophic stage. Both strains induced the least DEGs in the biotrophic stage compared to the initial invasion and necrotrophic stages. The orthologs of the effector genes <i>Ecp6</i>, <i>PemG1</i>, <i>XEG1</i>, <i>ACE1</i>, and <i>Mg3LysM</i> were exclusively induced by one of the two formae speciales depending on the infection stages. Some unigenes homologous to carbohydrate lytic enzyme genes, especially pectate lyases, were notably induced with multigermtubi forma specialis infection but not expressed in the monogermtubi forma specialis at an earlier infection stage. The extraordinary differences in the functional genome level between the two formae speciales of <i>M. brunnea</i> could be fundamental to exploring their host specificity determinant and evolution. This study also firstly provided the fungal transcriptome of the monogermtubi forma specialis for <i>M. brunnea</i>.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32210930</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Distinctive Gene Expression Profiles and Effectors Consistent With Host Specificity in Two Formae Speciales of <i>Marssonina brunnea</i>.</ArticleTitle><Pagination><MedlinePgn>276</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.00276</ELocationID><Abstract><AbstractText>The knowledge on the host specificity of a pathogen underlying an interaction is becoming an urgent necessity for global warming. In this study, the gene expression profiles and the roles of effectors in host specificity were integrally characterized with two formae speciales, multigermtubi and monogermtubi, of a hemibiotrophic pathogen <i>Marssonina brunnea</i> when they were infecting respective susceptible poplar hosts. With a functional genome comparison referring to a <i>de novo</i> transcriptome of <i>M. brunnea</i> and Pathogen-Host Interaction database functional annotations, the multigermtubi strain showed abundant and significant differentially expressed unigenes (DEGs) (more than 40%) in colonizing the initial invasion stage and in the necrotrophic stage. The monogermtubi strain induced less than 10% of DEGs in the initial invasion stage but which abruptly increased to more than 80% DEGs in the necrotrophic stage. Both strains induced the least DEGs in the biotrophic stage compared to the initial invasion and necrotrophic stages. The orthologs of the effector genes <i>Ecp6</i>, <i>PemG1</i>, <i>XEG1</i>, <i>ACE1</i>, and <i>Mg3LysM</i> were exclusively induced by one of the two formae speciales depending on the infection stages. Some unigenes homologous to carbohydrate lytic enzyme genes, especially pectate lyases, were notably induced with multigermtubi forma specialis infection but not expressed in the monogermtubi forma specialis at an earlier infection stage. The extraordinary differences in the functional genome level between the two formae speciales of <i>M. brunnea</i> could be fundamental to exploring their host specificity determinant and evolution. This study also firstly provided the fungal transcriptome of the monogermtubi forma specialis for <i>M. brunnea</i>.</AbstractText><CopyrightInformation>Copyright © 2020 Ren, Yan, Wu, Sun, Song and Li.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ren</LastName><ForeName>Fei</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Cereal & Oil Science and Technology, Academy of National Food and Strategic Reserves Administration, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yan</LastName><ForeName>Dong-Hui</ForeName><Initials>DH</Initials><AffiliationInfo><Affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Guanghua</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Xiaoming</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Xiaoyu</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Ruhua</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Marssonina brunnea</Keyword><Keyword MajorTopicYN="N">de novo transcriptome</Keyword><Keyword MajorTopicYN="N">disease</Keyword><Keyword MajorTopicYN="N">effectors</Keyword><Keyword MajorTopicYN="N">forma specialis</Keyword><Keyword MajorTopicYN="N">host specificity</Keyword><Keyword MajorTopicYN="N">poplar</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>10</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>02</Month><Day>06</Day></PubMedPubDate><PubMedPubDate 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sort="Wu, Guanghua" uniqKey="Wu G" first="Guanghua" last="Wu">Guanghua Wu</name><name sortKey="Yan, Dong Hui" sort="Yan, Dong Hui" uniqKey="Yan D" first="Dong-Hui" last="Yan">Dong-Hui Yan</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|clé= pubmed:32210930
|texte= Distinctive Gene Expression Profiles and Effectors Consistent With Host Specificity in Two Formae Speciales of Marssonina brunnea.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32210930" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |