Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae).
Identifieur interne : 003F22 ( Main/Curation ); précédent : 003F21; suivant : 003F23Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae).
Auteurs : Dorothy A. Steane [Australie]Source :
- DNA research : an international journal for rapid publication of reports on genes and genomes [ 1756-1663 ] ; 2005.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Chloroplast.
- genetics : Chloroplasts, Eucalyptus, Pseudogenes.
- Base Sequence, Genome, Plant, Molecular Sequence Data.
Abstract
The complete nucleotide sequence of the chloroplast genome of the hardwood species Eucalyptus globulus is presented and compared with chloroplast genomes of tree and non-tree angiosperms and two softwood tree species. The 160,286 bp genome is similar in gene order to that of Nicotiana, with an inverted repeat (IR) (26,393 bp) separated by a large single copy (LSC) region of 89,012 bp and a small single copy region of 18,488 bp. There are 128 genes (112 individual gene species and 16 genes duplicated in the inverted repeat) coding for 30 transfer RNAs, 4 ribosomal RNAs and 78 proteins. One pseudogene (psi-infA) and one pseudo-ycf (psi-ycf15) were identified. The chloroplast genome of E. globulus is essentially co-linear with that of another hardwood tree species, Populus trichocarpa, except that the latter lacks rps16 and rpl32, and the IR has expanded in Populus to include rps19 (part of the LSC in E. globulus). Since the chloroplast genome of E. globulus is not significantly different from other tree and non-tree angiosperm taxa, a comparison of hardwood and softwood chloroplasts becomes, in essence, a comparison of angiosperm and gymnosperm chloroplasts. When compared with E. globulus, Pinus chloroplasts have a very small IR, two extra tRNAs and four additional photosynthetic genes, lack any functional ndh genes and have a significantly different genome arrangement. There does not appear to be any correlation between plant habit and chloroplast genome composition and arrangement.
DOI: 10.1093/dnares/dsi006
PubMed: 16303753
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Steane</name><affiliation wicri:level="1"><nlm:affiliation>Cooperative Research Centre for Sustainable Production Forestry, School of Plant Science, University of Tasmania, Hobart, Tasmania, Australia. dorothy.steane@utas.edu.au</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Cooperative Research Centre for Sustainable Production Forestry, School of Plant Science, University of Tasmania, Hobart, Tasmania</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2005">2005</date><idno type="RBID">pubmed:16303753</idno><idno type="pmid">16303753</idno><idno type="doi">10.1093/dnares/dsi006</idno><idno type="wicri:Area/Main/Corpus">003F22</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003F22</idno><idno type="wicri:Area/Main/Curation">003F22</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003F22</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae).</title><author><name sortKey="Steane, Dorothy A" sort="Steane, Dorothy A" uniqKey="Steane D" first="Dorothy A" last="Steane">Dorothy A. Steane</name><affiliation wicri:level="1"><nlm:affiliation>Cooperative Research Centre for Sustainable Production Forestry, School of Plant Science, University of Tasmania, Hobart, Tasmania, Australia. dorothy.steane@utas.edu.au</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Cooperative Research Centre for Sustainable Production Forestry, School of Plant Science, University of Tasmania, Hobart, Tasmania</wicri:regionArea></affiliation></author></analytic><series><title level="j">DNA research : an international journal for rapid publication of reports on genes and genomes</title><idno type="eISSN">1756-1663</idno><imprint><date when="2005" type="published">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Chloroplasts (genetics)</term><term>DNA, Chloroplast (genetics)</term><term>Eucalyptus (genetics)</term><term>Genome, Plant (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Pseudogenes (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des chloroplastes (génétique)</term><term>Chloroplastes (génétique)</term><term>Données de séquences moléculaires (MeSH)</term><term>Eucalyptus (génétique)</term><term>Génome végétal (MeSH)</term><term>Pseudogènes (génétique)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Chloroplast</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chloroplasts</term><term>Eucalyptus</term><term>Pseudogenes</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des chloroplastes</term><term>Chloroplastes</term><term>Eucalyptus</term><term>Pseudogènes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Genome, Plant</term><term>Molecular Sequence Data</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Génome végétal</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The complete nucleotide sequence of the chloroplast genome of the hardwood species Eucalyptus globulus is presented and compared with chloroplast genomes of tree and non-tree angiosperms and two softwood tree species. The 160,286 bp genome is similar in gene order to that of Nicotiana, with an inverted repeat (IR) (26,393 bp) separated by a large single copy (LSC) region of 89,012 bp and a small single copy region of 18,488 bp. There are 128 genes (112 individual gene species and 16 genes duplicated in the inverted repeat) coding for 30 transfer RNAs, 4 ribosomal RNAs and 78 proteins. One pseudogene (psi-infA) and one pseudo-ycf (psi-ycf15) were identified. The chloroplast genome of E. globulus is essentially co-linear with that of another hardwood tree species, Populus trichocarpa, except that the latter lacks rps16 and rpl32, and the IR has expanded in Populus to include rps19 (part of the LSC in E. globulus). Since the chloroplast genome of E. globulus is not significantly different from other tree and non-tree angiosperm taxa, a comparison of hardwood and softwood chloroplasts becomes, in essence, a comparison of angiosperm and gymnosperm chloroplasts. When compared with E. globulus, Pinus chloroplasts have a very small IR, two extra tRNAs and four additional photosynthetic genes, lack any functional ndh genes and have a significantly different genome arrangement. There does not appear to be any correlation between plant habit and chloroplast genome composition and arrangement.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16303753</PMID><DateCompleted><Year>2007</Year><Month>10</Month><Day>12</Day></DateCompleted><DateRevised><Year>2009</Year><Month>02</Month><Day>24</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1756-1663</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><Issue>3</Issue><PubDate><Year>2005</Year></PubDate></JournalIssue><Title>DNA research : an international journal for rapid publication of reports on genes and genomes</Title><ISOAbbreviation>DNA Res</ISOAbbreviation></Journal><ArticleTitle>Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae).</ArticleTitle><Pagination><MedlinePgn>215-20</MedlinePgn></Pagination><Abstract><AbstractText>The complete nucleotide sequence of the chloroplast genome of the hardwood species Eucalyptus globulus is presented and compared with chloroplast genomes of tree and non-tree angiosperms and two softwood tree species. The 160,286 bp genome is similar in gene order to that of Nicotiana, with an inverted repeat (IR) (26,393 bp) separated by a large single copy (LSC) region of 89,012 bp and a small single copy region of 18,488 bp. There are 128 genes (112 individual gene species and 16 genes duplicated in the inverted repeat) coding for 30 transfer RNAs, 4 ribosomal RNAs and 78 proteins. One pseudogene (psi-infA) and one pseudo-ycf (psi-ycf15) were identified. The chloroplast genome of E. globulus is essentially co-linear with that of another hardwood tree species, Populus trichocarpa, except that the latter lacks rps16 and rpl32, and the IR has expanded in Populus to include rps19 (part of the LSC in E. globulus). Since the chloroplast genome of E. globulus is not significantly different from other tree and non-tree angiosperm taxa, a comparison of hardwood and softwood chloroplasts becomes, in essence, a comparison of angiosperm and gymnosperm chloroplasts. When compared with E. globulus, Pinus chloroplasts have a very small IR, two extra tRNAs and four additional photosynthetic genes, lack any functional ndh genes and have a significantly different genome arrangement. There does not appear to be any correlation between plant habit and chloroplast genome composition and arrangement.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Steane</LastName><ForeName>Dorothy A</ForeName><Initials>DA</Initials><AffiliationInfo><Affiliation>Cooperative Research Centre for Sustainable Production Forestry, School of Plant Science, University of Tasmania, Hobart, Tasmania, Australia. dorothy.steane@utas.edu.au</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AY780259</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>DNA Res</MedlineTA><NlmUniqueID>9423827</NlmUniqueID><ISSNLinking>1340-2838</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018742">DNA, Chloroplast</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002736" MajorTopicYN="N">Chloroplasts</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018742" MajorTopicYN="N">DNA, Chloroplast</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005052" MajorTopicYN="N">Eucalyptus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011544" MajorTopicYN="N">Pseudogenes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2005</Year><Month>11</Month><Day>24</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2007</Year><Month>10</Month><Day>13</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2005</Year><Month>11</Month><Day>24</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">16303753</ArticleId><ArticleId IdType="pii">12/3/215</ArticleId><ArticleId IdType="doi">10.1093/dnares/dsi006</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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