IS292: a novel insertion element from Agrobacterium.
Identifieur interne : 004A90 ( Main/Corpus ); précédent : 004A89; suivant : 004A91IS292: a novel insertion element from Agrobacterium.
Auteurs : C. Ponsonnet ; P. Normand ; G. Pilate ; X. NesmeSource :
- Microbiology (Reading, England) [ 1350-0872 ] ; 1995.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Bacterial Proteins (genetics), Base Sequence (MeSH), DNA Primers (genetics), DNA Transposable Elements (MeSH), DNA, Bacterial (genetics), Genes, Bacterial (MeSH), Molecular Sequence Data (MeSH), Restriction Mapping (MeSH), Rhizobium (genetics), Sequence Homology, Amino Acid (MeSH), Species Specificity (MeSH).
- MESH :
- chemical , genetics : Bacterial Proteins, DNA Primers, DNA, Bacterial.
- genetics : Rhizobium.
- Amino Acid Sequence, Base Sequence, DNA Transposable Elements, Genes, Bacterial, Molecular Sequence Data, Restriction Mapping, Sequence Homology, Amino Acid, Species Specificity.
Abstract
A new insertion sequence, IS292, located in the 6b gene of a nopaline-type Agrobacterium strain (X88-292) isolated from poplar was identified and sequenced. IS292 is 2494 bp long, has 21 bp inverted terminal repeats with two mismatches, and generates 10 bp direct repeats upon integration. No sequence similarity was found between IS292 and other insertion elements associated with Agrobacterium, but it shows strong similarity with ISR/1 from Rhizobium leguminosarum bv. viciae. The occurrence of IS292-like sequences in various Agrobacterium isolates, especially different Agrobacterium strains isolated from the same biotope, was demonstrated by DNA hybridization.
DOI: 10.1099/13500872-141-4-853
PubMed: 7773388
Links to Exploration step
pubmed:7773388Le document en format XML
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<author><name sortKey="Ponsonnet, C" sort="Ponsonnet, C" uniqKey="Ponsonnet C" first="C" last="Ponsonnet">C. Ponsonnet</name>
<affiliation><nlm:affiliation>Laboratoire d'Ecologie Microbienne du Sol, Université Claude Bernard Lyon 1, Villeurbanne, France.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Normand, P" sort="Normand, P" uniqKey="Normand P" first="P" last="Normand">P. Normand</name>
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<author><name sortKey="Pilate, G" sort="Pilate, G" uniqKey="Pilate G" first="G" last="Pilate">G. Pilate</name>
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<author><name sortKey="Nesme, X" sort="Nesme, X" uniqKey="Nesme X" first="X" last="Nesme">X. Nesme</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">IS292: a novel insertion element from Agrobacterium.</title>
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<author><name sortKey="Normand, P" sort="Normand, P" uniqKey="Normand P" first="P" last="Normand">P. Normand</name>
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<author><name sortKey="Pilate, G" sort="Pilate, G" uniqKey="Pilate G" first="G" last="Pilate">G. Pilate</name>
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<series><title level="j">Microbiology (Reading, England)</title>
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<imprint><date when="1995" type="published">1995</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Bacterial Proteins (genetics)</term>
<term>Base Sequence (MeSH)</term>
<term>DNA Primers (genetics)</term>
<term>DNA Transposable Elements (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Genes, Bacterial (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Restriction Mapping (MeSH)</term>
<term>Rhizobium (genetics)</term>
<term>Sequence Homology, Amino Acid (MeSH)</term>
<term>Species Specificity (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Bacterial Proteins</term>
<term>DNA Primers</term>
<term>DNA, Bacterial</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>DNA Transposable Elements</term>
<term>Genes, Bacterial</term>
<term>Molecular Sequence Data</term>
<term>Restriction Mapping</term>
<term>Sequence Homology, Amino Acid</term>
<term>Species Specificity</term>
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<front><div type="abstract" xml:lang="en">A new insertion sequence, IS292, located in the 6b gene of a nopaline-type Agrobacterium strain (X88-292) isolated from poplar was identified and sequenced. IS292 is 2494 bp long, has 21 bp inverted terminal repeats with two mismatches, and generates 10 bp direct repeats upon integration. No sequence similarity was found between IS292 and other insertion elements associated with Agrobacterium, but it shows strong similarity with ISR/1 from Rhizobium leguminosarum bv. viciae. The occurrence of IS292-like sequences in various Agrobacterium isolates, especially different Agrobacterium strains isolated from the same biotope, was demonstrated by DNA hybridization.</div>
</front>
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<DateCompleted><Year>1995</Year>
<Month>07</Month>
<Day>10</Day>
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<DateRevised><Year>2020</Year>
<Month>08</Month>
<Day>26</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Print">1350-0872</ISSN>
<JournalIssue CitedMedium="Print"><Volume>141 ( Pt 4)</Volume>
<PubDate><Year>1995</Year>
<Month>Apr</Month>
</PubDate>
</JournalIssue>
<Title>Microbiology (Reading, England)</Title>
<ISOAbbreviation>Microbiology (Reading)</ISOAbbreviation>
</Journal>
<ArticleTitle>IS292: a novel insertion element from Agrobacterium.</ArticleTitle>
<Pagination><MedlinePgn>853-61</MedlinePgn>
</Pagination>
<Abstract><AbstractText>A new insertion sequence, IS292, located in the 6b gene of a nopaline-type Agrobacterium strain (X88-292) isolated from poplar was identified and sequenced. IS292 is 2494 bp long, has 21 bp inverted terminal repeats with two mismatches, and generates 10 bp direct repeats upon integration. No sequence similarity was found between IS292 and other insertion elements associated with Agrobacterium, but it shows strong similarity with ISR/1 from Rhizobium leguminosarum bv. viciae. The occurrence of IS292-like sequences in various Agrobacterium isolates, especially different Agrobacterium strains isolated from the same biotope, was demonstrated by DNA hybridization.</AbstractText>
</Abstract>
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<AffiliationInfo><Affiliation>Laboratoire d'Ecologie Microbienne du Sol, Université Claude Bernard Lyon 1, Villeurbanne, France.</Affiliation>
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<Author ValidYN="Y"><LastName>Normand</LastName>
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<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>L29283</AccessionNumber>
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<GeneSymbolList><GeneSymbol>6b</GeneSymbol>
</GeneSymbolList>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001426" MajorTopicYN="N">Bacterial Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName>
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<MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D004251" MajorTopicYN="Y">DNA Transposable Elements</DescriptorName>
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<MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
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<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
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<MeshHeading><DescriptorName UI="D015183" MajorTopicYN="N">Restriction Mapping</DescriptorName>
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<MeshHeading><DescriptorName UI="D012231" MajorTopicYN="N">Rhizobium</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName>
</MeshHeading>
</MeshHeadingList>
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