Genetic mapping in (Populus tomentosa x Populus bolleana) and P. tomentosa Carr. using AFLP markers.
Identifieur interne : 004392 ( Main/Corpus ); précédent : 004391; suivant : 004393Genetic mapping in (Populus tomentosa x Populus bolleana) and P. tomentosa Carr. using AFLP markers.
Auteurs : D. Zhang ; Z. Zhang ; K. Yang ; B. LiSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 0040-5752 ] ; 2004.
English descriptors
- KwdEn :
- MESH :
- chemical : DNA Primers.
- genetics : Populus.
- Chromosome Mapping, Genetic Carrier Screening, Genome, Hybridization, Genetic, Polymorphism, Restriction Fragment Length.
Abstract
The AFLP genetic linkage maps for two poplar cultivars were constructed with the pseudo-test-cross mapping strategy. The hybrids were derived from an interspecific backcross between the female hybrid clone "TB01" (Populus tomentosa x Populus bolleana) and the male clone "LM50" ( P. tomentosa). A total of 782 polymorphic fragments were obtained with a PCR-based strategy using 49 enzyme-nested ( EcoRI/ MseI) primer combinations. Six hundred and thirty two of these fragments segregated in a 1:1 ratio ( P<0.01), indicating that these DNA polymorphisms are heterozygous in one parent and null in the other. The linkage analysis was performed using Mapmaker version 3.0 with LOD 5.0 and a maximum recombination fraction (theta) of 0.3. Map distances were estimated using the Kosambi mapping function. In the framework map for "LM50" (P. tomentosa), 218 markers were aligned in 19 major linkage groups. The linked loci spanned approximately 2,683 cM of the poplar genome, with an average distance of 12.3 cM between adjacent markers. For "TB01" (P. tomentosa x P. bolleana), the analysis revealed 144 loci, which were mapped to 19 major linkage groups and covered about 1,956 cM, with an average distance of 13.6 cM between adjacent markers. These maps covered about 87% and 77% of the estimated genome size of parents "LM50" and "TB01", respectively. The maps developed in this study lay an important foundation for future genomics research in poplar, providing a means for localizing genes controlling economically important traits in P. tomentosa.
DOI: 10.1007/s00122-003-1478-7
PubMed: 14564399
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pubmed:14564399Le document en format XML
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Li</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2004">2004</date><idno type="RBID">pubmed:14564399</idno><idno type="pmid">14564399</idno><idno type="doi">10.1007/s00122-003-1478-7</idno><idno type="wicri:Area/Main/Corpus">004392</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">004392</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic mapping in (Populus tomentosa x Populus bolleana) and P. tomentosa Carr. using AFLP markers.</title><author><name sortKey="Zhang, D" sort="Zhang, D" uniqKey="Zhang D" first="D" last="Zhang">D. Zhang</name><affiliation><nlm:affiliation>Institute of Populus tomentosa, Beijing Forestry University, 100083 Beijing, P. R. China. dqzhang@forestry.ac.cn</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Z" sort="Zhang, Z" uniqKey="Zhang Z" first="Z" last="Zhang">Z. Zhang</name></author><author><name sortKey="Yang, K" sort="Yang, K" uniqKey="Yang K" first="K" last="Yang">K. Yang</name></author><author><name sortKey="Li, B" sort="Li, B" uniqKey="Li B" first="B" last="Li">B. Li</name></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="ISSN">0040-5752</idno><imprint><date when="2004" type="published">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>DNA Primers (MeSH)</term><term>Genetic Carrier Screening (MeSH)</term><term>Genome (MeSH)</term><term>Hybridization, Genetic (MeSH)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Populus (genetics)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA Primers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Genetic Carrier Screening</term><term>Genome</term><term>Hybridization, Genetic</term><term>Polymorphism, Restriction Fragment Length</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The AFLP genetic linkage maps for two poplar cultivars were constructed with the pseudo-test-cross mapping strategy. The hybrids were derived from an interspecific backcross between the female hybrid clone "TB01" (Populus tomentosa x Populus bolleana) and the male clone "LM50" ( P. tomentosa). A total of 782 polymorphic fragments were obtained with a PCR-based strategy using 49 enzyme-nested ( EcoRI/ MseI) primer combinations. Six hundred and thirty two of these fragments segregated in a 1:1 ratio ( P<0.01), indicating that these DNA polymorphisms are heterozygous in one parent and null in the other. The linkage analysis was performed using Mapmaker version 3.0 with LOD 5.0 and a maximum recombination fraction (theta) of 0.3. Map distances were estimated using the Kosambi mapping function. In the framework map for "LM50" (P. tomentosa), 218 markers were aligned in 19 major linkage groups. The linked loci spanned approximately 2,683 cM of the poplar genome, with an average distance of 12.3 cM between adjacent markers. For "TB01" (P. tomentosa x P. bolleana), the analysis revealed 144 loci, which were mapped to 19 major linkage groups and covered about 1,956 cM, with an average distance of 13.6 cM between adjacent markers. These maps covered about 87% and 77% of the estimated genome size of parents "LM50" and "TB01", respectively. The maps developed in this study lay an important foundation for future genomics research in poplar, providing a means for localizing genes controlling economically important traits in P. tomentosa.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">14564399</PMID><DateCompleted><Year>2004</Year><Month>04</Month><Day>30</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0040-5752</ISSN><JournalIssue CitedMedium="Print"><Volume>108</Volume><Issue>4</Issue><PubDate><Year>2004</Year><Month>Feb</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Genetic mapping in (Populus tomentosa x Populus bolleana) and P. tomentosa Carr. using AFLP markers.</ArticleTitle><Pagination><MedlinePgn>657-62</MedlinePgn></Pagination><Abstract><AbstractText>The AFLP genetic linkage maps for two poplar cultivars were constructed with the pseudo-test-cross mapping strategy. The hybrids were derived from an interspecific backcross between the female hybrid clone "TB01" (Populus tomentosa x Populus bolleana) and the male clone "LM50" ( P. tomentosa). A total of 782 polymorphic fragments were obtained with a PCR-based strategy using 49 enzyme-nested ( EcoRI/ MseI) primer combinations. Six hundred and thirty two of these fragments segregated in a 1:1 ratio ( P<0.01), indicating that these DNA polymorphisms are heterozygous in one parent and null in the other. The linkage analysis was performed using Mapmaker version 3.0 with LOD 5.0 and a maximum recombination fraction (theta) of 0.3. Map distances were estimated using the Kosambi mapping function. In the framework map for "LM50" (P. tomentosa), 218 markers were aligned in 19 major linkage groups. The linked loci spanned approximately 2,683 cM of the poplar genome, with an average distance of 12.3 cM between adjacent markers. For "TB01" (P. tomentosa x P. bolleana), the analysis revealed 144 loci, which were mapped to 19 major linkage groups and covered about 1,956 cM, with an average distance of 13.6 cM between adjacent markers. These maps covered about 87% and 77% of the estimated genome size of parents "LM50" and "TB01", respectively. The maps developed in this study lay an important foundation for future genomics research in poplar, providing a means for localizing genes controlling economically important traits in P. tomentosa.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>D</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Institute of Populus tomentosa, Beijing Forestry University, 100083 Beijing, P. R. China. dqzhang@forestry.ac.cn</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Z</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>K</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>B</ForeName><Initials>B</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2003</Year><Month>10</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl 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UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2002</Year><Month>12</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2003</Year><Month>08</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2003</Year><Month>10</Month><Day>18</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2004</Year><Month>5</Month><Day>1</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2003</Year><Month>10</Month><Day>18</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">14564399</ArticleId><ArticleId IdType="doi">10.1007/s00122-003-1478-7</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Genetics. 2001 Jun;158(2):787-809</Citation><ArticleIdList><ArticleId IdType="pubmed">11404342</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1999 Jun;98(8):1279-92</Citation><ArticleIdList><ArticleId IdType="pubmed">12238515</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1994 Nov;89(5):551-8</Citation><ArticleIdList><ArticleId IdType="pubmed">24177929</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1994 Oct;89(2-3):167-78</Citation><ArticleIdList><ArticleId IdType="pubmed">24177824</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1995 Nov 11;23(21):4407-14</Citation><ArticleIdList><ArticleId IdType="pubmed">7501463</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1988 Dec;120(4):947-58</Citation><ArticleIdList><ArticleId IdType="pubmed">2906309</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1995 Dec;141(4):1573-81</Citation><ArticleIdList><ArticleId IdType="pubmed">8601495</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1980 Oct 10;8(19):4321-5</Citation><ArticleIdList><ArticleId IdType="pubmed">7433111</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1995 Mar 14;92(6):2066-70</Citation><ArticleIdList><ArticleId IdType="pubmed">11607517</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1995 Jun;90(7-8):1028-34</Citation><ArticleIdList><ArticleId IdType="pubmed">24173058</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1995 Feb;139(2):963-73</Citation><ArticleIdList><ArticleId IdType="pubmed">7713445</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2002 Feb;104(2-3):214-222</Citation><ArticleIdList><ArticleId IdType="pubmed">12582689</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1982 May;101(1):129-37</Citation><ArticleIdList><ArticleId IdType="pubmed">17246078</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome. 2001 Aug;44(4):602-9</Citation><ArticleIdList><ArticleId IdType="pubmed">11550894</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1998 Nov;150(3):1209-16</Citation><ArticleIdList><ArticleId IdType="pubmed">9799272</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1999 Aug;99(3-4):445-52</Citation><ArticleIdList><ArticleId IdType="pubmed">22665177</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1994 Aug;137(4):1121-37</Citation><ArticleIdList><ArticleId IdType="pubmed">7982566</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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