Niastella populi sp. nov., isolated from soil of Euphrates poplar (Populus euphratica) forest, and emended description of the genus Niastella.
Identifieur interne : 003494 ( Main/Corpus ); précédent : 003493; suivant : 003495Niastella populi sp. nov., isolated from soil of Euphrates poplar (Populus euphratica) forest, and emended description of the genus Niastella.
Auteurs : Kundi Zhang ; Yang Wang ; Yali Tang ; Jun Dai ; Lei Zhang ; Hongli An ; Guangchao Luo ; Erkin Rahman ; Chengxiang FangSource :
- International journal of systematic and evolutionary microbiology [ 1466-5026 ] ; 2010.
English descriptors
- KwdEn :
- DNA, Bacterial (genetics), DNA, Ribosomal (genetics), Fatty Acids (chemistry), Fatty Acids (metabolism), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Soil Microbiology (MeSH), Sphingobacterium (classification), Sphingobacterium (genetics), Sphingobacterium (isolation & purification), Sphingobacterium (metabolism).
- MESH :
- chemical , chemistry : Fatty Acids.
- chemical , genetics : DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- chemical , metabolism : Fatty Acids.
- classification : Sphingobacterium.
- genetics : Sphingobacterium.
- isolation & purification : Sphingobacterium.
- metabolism : Sphingobacterium.
- microbiology : Populus.
- Molecular Sequence Data, Phylogeny, Soil Microbiology.
Abstract
A novel bacterial strain, designated THYL-44(T), was isolated from the soil of a Euphrates poplar (Populus euphratica) forest in Xinjiang, China. The cells were strictly aerobic, Gram-staining-negative, non-flagellated, non-motile and filamentous. Growth occurred at 17-37 degrees C (optimum 30 degrees C), at pH 5.0-8.0 (optimum pH 7.0) and with 0-1 % NaCl (w/v; optimum 0 %). Flexirubin pigments were not produced. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain THYL-44(T) was closely related to Niastella koreensis KACC 11465(T) (95.5 % sequence similarity). The major respiratory quinone was MK-7 and the predominant cellular fatty acids were iso-C(15 : 0) (28.6 %), iso-C(17 : 0) 3-OH (23.9 %) and iso-C(15 : 1) G (17.4 %). The DNA G+C content was 45.2 mol%. Therefore, the phylogenetic, physiological and chemotaxonomic data demonstrated that strain THYL-44(T) represents a novel species of the genus Niastella , for which the name Niastella populi sp. nov. is proposed. The type strain is THYL-44(T) (=CCTCC AB 208238(T)=KCTC 22560(T)). On the basis of new data, an emended description of the genus Niastella is also proposed.
DOI: 10.1099/ijs.0.012112-0
PubMed: 19654358
Links to Exploration step
pubmed:19654358Le document en format XML
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Jun" sort="Dai, Jun" uniqKey="Dai J" first="Jun" last="Dai">Jun Dai</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Lei" sort="Zhang, Lei" uniqKey="Zhang L" first="Lei" last="Zhang">Lei Zhang</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="An, Hongli" sort="An, Hongli" uniqKey="An H" first="Hongli" last="An">Hongli An</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Luo, Guangchao" sort="Luo, Guangchao" uniqKey="Luo G" first="Guangchao" last="Luo">Guangchao Luo</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name 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sp. nov., isolated from soil of Euphrates poplar (Populus euphratica) forest, and emended description of the genus Niastella.</title><author><name sortKey="Zhang, Kundi" sort="Zhang, Kundi" uniqKey="Zhang K" first="Kundi" last="Zhang">Kundi Zhang</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Yang" sort="Wang, Yang" uniqKey="Wang Y" first="Yang" last="Wang">Yang Wang</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Tang, Yali" sort="Tang, Yali" uniqKey="Tang Y" first="Yali" last="Tang">Yali Tang</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Dai, Jun" sort="Dai, Jun" uniqKey="Dai J" first="Jun" last="Dai">Jun Dai</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Lei" sort="Zhang, Lei" uniqKey="Zhang L" first="Lei" last="Zhang">Lei Zhang</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="An, Hongli" sort="An, Hongli" uniqKey="An H" first="Hongli" last="An">Hongli An</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Luo, Guangchao" sort="Luo, Guangchao" uniqKey="Luo G" first="Guangchao" last="Luo">Guangchao Luo</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Rahman, Erkin" sort="Rahman, Erkin" uniqKey="Rahman E" first="Erkin" last="Rahman">Erkin Rahman</name><affiliation><nlm:affiliation>College of Life Science and Technology, Xinjiang University, Urumchi 830046, PR China.</nlm:affiliation></affiliation></author><author><name sortKey="Fang, Chengxiang" sort="Fang, Chengxiang" uniqKey="Fang C" first="Chengxiang" last="Fang">Chengxiang Fang</name><affiliation><nlm:affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</nlm:affiliation></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="ISSN">1466-5026</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Bacterial (genetics)</term><term>DNA, Ribosomal (genetics)</term><term>Fatty Acids (chemistry)</term><term>Fatty Acids (metabolism)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>Populus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Soil Microbiology (MeSH)</term><term>Sphingobacterium (classification)</term><term>Sphingobacterium (genetics)</term><term>Sphingobacterium (isolation & purification)</term><term>Sphingobacterium (metabolism)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Fatty Acids</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Sphingobacterium</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Sphingobacterium</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Sphingobacterium</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Sphingobacterium</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A novel bacterial strain, designated THYL-44(T), was isolated from the soil of a Euphrates poplar (Populus euphratica) forest in Xinjiang, China. The cells were strictly aerobic, Gram-staining-negative, non-flagellated, non-motile and filamentous. Growth occurred at 17-37 degrees C (optimum 30 degrees C), at pH 5.0-8.0 (optimum pH 7.0) and with 0-1 % NaCl (w/v; optimum 0 %). Flexirubin pigments were not produced. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain THYL-44(T) was closely related to Niastella koreensis KACC 11465(T) (95.5 % sequence similarity). The major respiratory quinone was MK-7 and the predominant cellular fatty acids were iso-C(15 : 0) (28.6 %), iso-C(17 : 0) 3-OH (23.9 %) and iso-C(15 : 1) G (17.4 %). The DNA G+C content was 45.2 mol%. Therefore, the phylogenetic, physiological and chemotaxonomic data demonstrated that strain THYL-44(T) represents a novel species of the genus Niastella , for which the name Niastella populi sp. nov. is proposed. The type strain is THYL-44(T) (=CCTCC AB 208238(T)=KCTC 22560(T)). On the basis of new data, an emended description of the genus Niastella is also proposed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19654358</PMID><DateCompleted><Year>2010</Year><Month>04</Month><Day>27</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>28</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1466-5026</ISSN><JournalIssue CitedMedium="Print"><Volume>60</Volume><Issue>Pt 3</Issue><PubDate><Year>2010</Year><Month>Mar</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Niastella populi sp. nov., isolated from soil of Euphrates poplar (Populus euphratica) forest, and emended description of the genus Niastella.</ArticleTitle><Pagination><MedlinePgn>542-545</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.012112-0</ELocationID><Abstract><AbstractText>A novel bacterial strain, designated THYL-44(T), was isolated from the soil of a Euphrates poplar (Populus euphratica) forest in Xinjiang, China. The cells were strictly aerobic, Gram-staining-negative, non-flagellated, non-motile and filamentous. Growth occurred at 17-37 degrees C (optimum 30 degrees C), at pH 5.0-8.0 (optimum pH 7.0) and with 0-1 % NaCl (w/v; optimum 0 %). Flexirubin pigments were not produced. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain THYL-44(T) was closely related to Niastella koreensis KACC 11465(T) (95.5 % sequence similarity). The major respiratory quinone was MK-7 and the predominant cellular fatty acids were iso-C(15 : 0) (28.6 %), iso-C(17 : 0) 3-OH (23.9 %) and iso-C(15 : 1) G (17.4 %). The DNA G+C content was 45.2 mol%. Therefore, the phylogenetic, physiological and chemotaxonomic data demonstrated that strain THYL-44(T) represents a novel species of the genus Niastella , for which the name Niastella populi sp. nov. is proposed. The type strain is THYL-44(T) (=CCTCC AB 208238(T)=KCTC 22560(T)). On the basis of new data, an emended description of the genus Niastella is also proposed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Kundi</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yang</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Yali</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dai</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Lei</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>An</LastName><ForeName>Hongli</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Guangchao</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rahman</LastName><ForeName>Erkin</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>College of Life Science and Technology, Xinjiang University, Urumchi 830046, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Chengxiang</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>EU877262</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2009</Year><Month>08</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045249" MajorTopicYN="N">Sphingobacterium</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2009</Year><Month>8</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2009</Year><Month>8</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2010</Year><Month>4</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19654358</ArticleId><ArticleId 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