Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species.
Identifieur interne : 003095 ( Main/Corpus ); précédent : 003094; suivant : 003096Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species.
Auteurs : Jed A. Christianson ; Danny J. Llewellyn ; Elizabeth S. Dennis ; Iain W. WilsonSource :
- Plant signaling & behavior [ 1559-2324 ] ; 2010.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Arabidopsis (metabolism), Expressed Sequence Tags (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Gossypium (genetics), Gossypium (metabolism), Oligonucleotide Array Sequence Analysis (MeSH), Oxygen (physiology), Plant Roots (genetics), Populus (genetics), Populus (metabolism), Species Specificity (MeSH), Stress, Physiological (MeSH), Sugar Phosphates (metabolism), Trehalose (analogs & derivatives), Trehalose (metabolism), Water (physiology).
- MESH :
- chemical , analogs & derivatives : Trehalose.
- chemical , metabolism : Sugar Phosphates, Trehalose.
- chemical , physiology : Oxygen, Water.
- genetics : Arabidopsis, Gossypium, Plant Roots, Populus.
- metabolism : Arabidopsis, Gossypium, Populus.
- Expressed Sequence Tags, Gene Expression Profiling, Gene Expression Regulation, Plant, Oligonucleotide Array Sequence Analysis, Species Specificity, Stress, Physiological.
Abstract
Waterlogging is a serious impediment to crop productivity worldwide which acts to reduce oxygen levels in the rhizosphere due to the low diffusion rate of molecular oxygen in water. Plants respond to low oxygen through rapid and specific changes at both the transcriptional and translational levels. Transcriptional changes to low-oxygen (hypoxia) stress have been studied in a number of plant species using whole genome microarrays. Using transcriptome data from root tissue from early time points (4-5 h) from cotton (Gossypium hirsutum), Arabidopsis and gray poplar (Populus x canescens), we have identified a core set of orthologous genes that responded to hypoxia in similar ways between species, and others that showed species specific responses . Responses to hypoxia were most similar between Arabidopsis and cotton, while the waterlogging tolerant poplar species exhibited some significant differences.
DOI: 10.4161/psb.5.8.12231
PubMed: 20724824
PubMed Central: PMC3115181
Links to Exploration step
pubmed:20724824Le document en format XML
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<author><name sortKey="Dennis, Elizabeth S" sort="Dennis, Elizabeth S" uniqKey="Dennis E" first="Elizabeth S" last="Dennis">Elizabeth S. Dennis</name>
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<author><name sortKey="Wilson, Iain W" sort="Wilson, Iain W" uniqKey="Wilson I" first="Iain W" last="Wilson">Iain W. Wilson</name>
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<term>Gossypium (genetics)</term>
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<front><div type="abstract" xml:lang="en">Waterlogging is a serious impediment to crop productivity worldwide which acts to reduce oxygen levels in the rhizosphere due to the low diffusion rate of molecular oxygen in water. Plants respond to low oxygen through rapid and specific changes at both the transcriptional and translational levels. Transcriptional changes to low-oxygen (hypoxia) stress have been studied in a number of plant species using whole genome microarrays. Using transcriptome data from root tissue from early time points (4-5 h) from cotton (Gossypium hirsutum), Arabidopsis and gray poplar (Populus x canescens), we have identified a core set of orthologous genes that responded to hypoxia in similar ways between species, and others that showed species specific responses . Responses to hypoxia were most similar between Arabidopsis and cotton, while the waterlogging tolerant poplar species exhibited some significant differences.</div>
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<Abstract><AbstractText>Waterlogging is a serious impediment to crop productivity worldwide which acts to reduce oxygen levels in the rhizosphere due to the low diffusion rate of molecular oxygen in water. Plants respond to low oxygen through rapid and specific changes at both the transcriptional and translational levels. Transcriptional changes to low-oxygen (hypoxia) stress have been studied in a number of plant species using whole genome microarrays. Using transcriptome data from root tissue from early time points (4-5 h) from cotton (Gossypium hirsutum), Arabidopsis and gray poplar (Populus x canescens), we have identified a core set of orthologous genes that responded to hypoxia in similar ways between species, and others that showed species specific responses . Responses to hypoxia were most similar between Arabidopsis and cotton, while the waterlogging tolerant poplar species exhibited some significant differences.</AbstractText>
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<ReferenceList><Reference><Citation>Plant Cell. 2005 May;17(5):1343-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15829601</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2009 Aug 20;460(7258):1026-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19693083</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2006;7:535</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17176458</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell Physiol. 2010 Jan;51(1):21-37</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19923201</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):7209-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9618564</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2005 Mar;137(3):1115-29</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15734912</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2009 Jan;149(1):461-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19005089</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2009 Apr;149(4):1860-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19193861</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Mol Biol. 1990 Oct 5;215(3):403-10</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2231712</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 1999 Jan;119(1):57-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9880346</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15898-903</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12456878</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2006 Aug 10;442(7103):705-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16900200</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2010 Mar;152(3):1484-500</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20097791</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
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