Global identification of miRNAs and targets in Populus euphratica under salt stress.
Identifieur interne : 002692 ( Main/Corpus ); précédent : 002691; suivant : 002693Global identification of miRNAs and targets in Populus euphratica under salt stress.
Auteurs : Bosheng Li ; Hui Duan ; Jigang Li ; Xing Wang Deng ; Weilun Yin ; Xinli XiaSource :
- Plant molecular biology [ 1573-5028 ] ; 2013.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Conserved Sequence (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), High-Throughput Nucleotide Sequencing (methods), MicroRNAs (genetics), MicroRNAs (isolation & purification), MicroRNAs (metabolism), Plant Leaves (drug effects), Plant Leaves (genetics), Plant Leaves (metabolism), Plant Leaves (physiology), Populus (drug effects), Populus (genetics), Populus (metabolism), Populus (physiology), RNA Cleavage (MeSH), RNA, Plant (genetics), RNA, Plant (isolation & purification), RNA, Plant (metabolism), Sequence Analysis, RNA (MeSH), Sodium Chloride (pharmacology), Stress, Physiological (MeSH), Transcriptome (MeSH).
- MESH :
- chemical , genetics : MicroRNAs, RNA, Plant.
- chemical , isolation & purification : MicroRNAs, RNA, Plant.
- chemical , metabolism : MicroRNAs, RNA, Plant.
- drug effects : Plant Leaves, Populus.
- genetics : Plant Leaves, Populus.
- metabolism : Plant Leaves, Populus.
- methods : High-Throughput Nucleotide Sequencing.
- chemical , pharmacology : Sodium Chloride.
- physiology : Plant Leaves, Populus.
- Base Sequence, Conserved Sequence, Gene Expression Profiling, Gene Expression Regulation, Plant, RNA Cleavage, Sequence Analysis, RNA, Stress, Physiological, Transcriptome.
Abstract
Populus euphratica, a typical hydro-halophyte, is ideal for studying salt stress responses in woody plants. MicroRNAs (miRNAs) are endogenous non-coding small RNAs that fulfilled an important post-transcriptional regulatory function. MiRNA may regulate tolerance to salt stress but this has not been widely studied in P. euphratica. In this investigation, the small RNAome, degradome and transcriptome were studied in salt stress treated P. euphratica by deep sequencing. Two hundred and eleven conserved miRNAs between Populus trichocarpa and P. euphratica have been found. In addition, 162 new miRNAs, belonging to 93 families, were identified in P. euphratica. Degradome sequencing experimentally verified 112 targets that belonged to 51 identified miRNAs, few of which were known previously in P. euphratica. Transcriptome profiling showed that expression of 15 miRNA-target pairs displayed reverse changing pattern under salt stress. Together, these results indicate that, in P. euphratica under salt stress, a large number of new miRNAs could be discovered, and both known and new miRNA were functionally cleaving to their target mRNA. Expression of miRNA and target were correspondingly induced by salt stress but that it was a complex process in P. euphratica.
DOI: 10.1007/s11103-013-0010-y
PubMed: 23430564
Links to Exploration step
pubmed:23430564Le document en format XML
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<front><div type="abstract" xml:lang="en">Populus euphratica, a typical hydro-halophyte, is ideal for studying salt stress responses in woody plants. MicroRNAs (miRNAs) are endogenous non-coding small RNAs that fulfilled an important post-transcriptional regulatory function. MiRNA may regulate tolerance to salt stress but this has not been widely studied in P. euphratica. In this investigation, the small RNAome, degradome and transcriptome were studied in salt stress treated P. euphratica by deep sequencing. Two hundred and eleven conserved miRNAs between Populus trichocarpa and P. euphratica have been found. In addition, 162 new miRNAs, belonging to 93 families, were identified in P. euphratica. Degradome sequencing experimentally verified 112 targets that belonged to 51 identified miRNAs, few of which were known previously in P. euphratica. Transcriptome profiling showed that expression of 15 miRNA-target pairs displayed reverse changing pattern under salt stress. Together, these results indicate that, in P. euphratica under salt stress, a large number of new miRNAs could be discovered, and both known and new miRNA were functionally cleaving to their target mRNA. Expression of miRNA and target were correspondingly induced by salt stress but that it was a complex process in P. euphratica.</div>
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