A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
Identifieur interne : 001D80 ( Main/Corpus ); précédent : 001D79; suivant : 001D81A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
Auteurs : Judith Jervis ; Sherry B. Hildreth ; Xiaoyan Sheng ; Eric P. Beers ; Amy M. Brunner ; Richard F. HelmSource :
- Phytochemistry [ 1873-3700 ] ; 2015.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Arabidopsis (metabolism), Metabolomics (MeSH), Molecular Structure (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Stems (metabolism), Plants, Genetically Modified (metabolism), Populus (chemistry), Populus (genetics), Salicaceae (chemistry), Transcription Factors (genetics), Transcription Factors (metabolism), Wood (metabolism), Xylem (metabolism).
- MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- chemistry : Populus, Salicaceae.
- genetics : Arabidopsis, Populus.
- metabolism : Arabidopsis, Plant Proteins, Plant Stems, Plants, Genetically Modified, Transcription Factors, Wood, Xylem.
- Metabolomics, Molecular Structure.
Abstract
Several xylem-associated regulatory genes have been identified that control processes associated with wood formation in poplar. Prominent among these are the NAC domain transcription factors (NACs). Here, the putative involvement of Populus NAC154, a co-ortholog of the Arabidopsis gene SND2, was evaluated as a regulator of "secondary" biosynthetic processes in stem internode tissues by interrogating aqueous methanolic extracts from control and transgenic trees. Comprehensive untargeted metabolite profiling was accomplished with a liquid chromatography-mass spectrometry platform that utilized two different chromatographic supports (HILIC and reversed phase) and both positive and negative ionization modes. Evaluation of current and previous year tissues provided datasets for assessing the effects of NAC154 overexpression in wood maturation processes. Phenolic glycoside levels as well as those of oligolignols, sucrose and arginine were modulated with phenotypic and chemotypic traits exhibiting similar trends. Specifically, increased levels of arginine in the NAC154 overexpressing tissues supports a role for the transcription factor in senescence/dormancy-associated processes.
DOI: 10.1016/j.phytochem.2015.02.013
PubMed: 25771508
Links to Exploration step
pubmed:25771508Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.</title><author><name sortKey="Jervis, Judith" sort="Jervis, Judith" uniqKey="Jervis J" first="Judith" last="Jervis">Judith Jervis</name><affiliation><nlm:affiliation>Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hildreth, Sherry B" sort="Hildreth, Sherry B" uniqKey="Hildreth S" first="Sherry B" last="Hildreth">Sherry B. Hildreth</name><affiliation><nlm:affiliation>Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Sheng, Xiaoyan" sort="Sheng, Xiaoyan" uniqKey="Sheng X" first="Xiaoyan" last="Sheng">Xiaoyan Sheng</name><affiliation><nlm:affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Beers, Eric P" sort="Beers, Eric P" uniqKey="Beers E" first="Eric P" last="Beers">Eric P. Beers</name><affiliation><nlm:affiliation>Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Brunner, Amy M" sort="Brunner, Amy M" uniqKey="Brunner A" first="Amy M" last="Brunner">Amy M. Brunner</name><affiliation><nlm:affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Helm, Richard F" sort="Helm, Richard F" uniqKey="Helm R" first="Richard F" last="Helm">Richard F. Helm</name><affiliation><nlm:affiliation>Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA. Electronic address: helmrf@vt.edu.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25771508</idno><idno type="pmid">25771508</idno><idno type="doi">10.1016/j.phytochem.2015.02.013</idno><idno type="wicri:Area/Main/Corpus">001D80</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001D80</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.</title><author><name sortKey="Jervis, Judith" sort="Jervis, Judith" uniqKey="Jervis J" first="Judith" last="Jervis">Judith Jervis</name><affiliation><nlm:affiliation>Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hildreth, Sherry B" sort="Hildreth, Sherry B" uniqKey="Hildreth S" first="Sherry B" last="Hildreth">Sherry B. Hildreth</name><affiliation><nlm:affiliation>Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Sheng, Xiaoyan" sort="Sheng, Xiaoyan" uniqKey="Sheng X" first="Xiaoyan" last="Sheng">Xiaoyan Sheng</name><affiliation><nlm:affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Beers, Eric P" sort="Beers, Eric P" uniqKey="Beers E" first="Eric P" last="Beers">Eric P. Beers</name><affiliation><nlm:affiliation>Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Brunner, Amy M" sort="Brunner, Amy M" uniqKey="Brunner A" first="Amy M" last="Brunner">Amy M. Brunner</name><affiliation><nlm:affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Helm, Richard F" sort="Helm, Richard F" uniqKey="Helm R" first="Richard F" last="Helm">Richard F. Helm</name><affiliation><nlm:affiliation>Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA. Electronic address: helmrf@vt.edu.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Phytochemistry</title><idno type="eISSN">1873-3700</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Arabidopsis (metabolism)</term><term>Metabolomics (MeSH)</term><term>Molecular Structure (MeSH)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Plant Stems (metabolism)</term><term>Plants, Genetically Modified (metabolism)</term><term>Populus (chemistry)</term><term>Populus (genetics)</term><term>Salicaceae (chemistry)</term><term>Transcription Factors (genetics)</term><term>Transcription Factors (metabolism)</term><term>Wood (metabolism)</term><term>Xylem (metabolism)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Populus</term><term>Salicaceae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Arabidopsis</term><term>Plant Proteins</term><term>Plant Stems</term><term>Plants, Genetically Modified</term><term>Transcription Factors</term><term>Wood</term><term>Xylem</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Metabolomics</term><term>Molecular Structure</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Several xylem-associated regulatory genes have been identified that control processes associated with wood formation in poplar. Prominent among these are the NAC domain transcription factors (NACs). Here, the putative involvement of Populus NAC154, a co-ortholog of the Arabidopsis gene SND2, was evaluated as a regulator of "secondary" biosynthetic processes in stem internode tissues by interrogating aqueous methanolic extracts from control and transgenic trees. Comprehensive untargeted metabolite profiling was accomplished with a liquid chromatography-mass spectrometry platform that utilized two different chromatographic supports (HILIC and reversed phase) and both positive and negative ionization modes. Evaluation of current and previous year tissues provided datasets for assessing the effects of NAC154 overexpression in wood maturation processes. Phenolic glycoside levels as well as those of oligolignols, sucrose and arginine were modulated with phenotypic and chemotypic traits exhibiting similar trends. Specifically, increased levels of arginine in the NAC154 overexpressing tissues supports a role for the transcription factor in senescence/dormancy-associated processes. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25771508</PMID><DateCompleted><Year>2016</Year><Month>04</Month><Day>01</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-3700</ISSN><JournalIssue CitedMedium="Internet"><Volume>115</Volume><PubDate><Year>2015</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Phytochemistry</Title><ISOAbbreviation>Phytochemistry</ISOAbbreviation></Journal><ArticleTitle>A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.</ArticleTitle><Pagination><MedlinePgn>112-20</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.phytochem.2015.02.013</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S0031-9422(15)00079-5</ELocationID><Abstract><AbstractText>Several xylem-associated regulatory genes have been identified that control processes associated with wood formation in poplar. Prominent among these are the NAC domain transcription factors (NACs). Here, the putative involvement of Populus NAC154, a co-ortholog of the Arabidopsis gene SND2, was evaluated as a regulator of "secondary" biosynthetic processes in stem internode tissues by interrogating aqueous methanolic extracts from control and transgenic trees. Comprehensive untargeted metabolite profiling was accomplished with a liquid chromatography-mass spectrometry platform that utilized two different chromatographic supports (HILIC and reversed phase) and both positive and negative ionization modes. Evaluation of current and previous year tissues provided datasets for assessing the effects of NAC154 overexpression in wood maturation processes. Phenolic glycoside levels as well as those of oligolignols, sucrose and arginine were modulated with phenotypic and chemotypic traits exhibiting similar trends. Specifically, increased levels of arginine in the NAC154 overexpressing tissues supports a role for the transcription factor in senescence/dormancy-associated processes. </AbstractText><CopyrightInformation>Copyright © 2015 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jervis</LastName><ForeName>Judith</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hildreth</LastName><ForeName>Sherry B</ForeName><Initials>SB</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sheng</LastName><ForeName>Xiaoyan</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beers</LastName><ForeName>Eric P</ForeName><Initials>EP</Initials><AffiliationInfo><Affiliation>Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brunner</LastName><ForeName>Amy M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Helm</LastName><ForeName>Richard F</ForeName><Initials>RF</Initials><AffiliationInfo><Affiliation>Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA. Electronic address: helmrf@vt.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>03</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Phytochemistry</MedlineTA><NlmUniqueID>0151434</NlmUniqueID><ISSNLinking>0031-9422</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055432" MajorTopicYN="N">Metabolomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015394" MajorTopicYN="N">Molecular Structure</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D031308" MajorTopicYN="N">Salicaceae</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D052584" MajorTopicYN="N">Xylem</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Arginine</Keyword><Keyword MajorTopicYN="N">LC–MS</Keyword><Keyword MajorTopicYN="N">Metabolomics</Keyword><Keyword MajorTopicYN="N">NAC transcription factor</Keyword><Keyword MajorTopicYN="N">Poplar</Keyword><Keyword MajorTopicYN="N">Populus tremula×P. alba</Keyword><Keyword MajorTopicYN="N">Salicaceae</Keyword><Keyword MajorTopicYN="N">Wood</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>07</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2014</Year><Month>12</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>02</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>3</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>3</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>4</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25771508</ArticleId><ArticleId IdType="pii">S0031-9422(15)00079-5</ArticleId><ArticleId IdType="doi">10.1016/j.phytochem.2015.02.013</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001D80 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001D80 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:25771508
|texte= A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:25771508" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |