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Quantitative Proteomic and Phosphoproteomic Approaches for Deciphering the Signaling Pathway for Tension Wood Formation in Poplar.

Identifieur interne : 001C43 ( Main/Corpus ); précédent : 001C42; suivant : 001C44

Quantitative Proteomic and Phosphoproteomic Approaches for Deciphering the Signaling Pathway for Tension Wood Formation in Poplar.

Auteurs : Mélanie Mauriat ; Jean-Charles Leplé ; Stéphane Claverol ; Jérôme Bartholomé ; Luc Negroni ; Nicolas Richet ; Céline Lalanne ; Marc Bonneu ; Catherine Coutand ; Christophe Plomion

Source :

RBID : pubmed:26112267

English descriptors

Abstract

Trees adjust their growth following forced changes in orientation to re-establish a vertical position. In angiosperms, this adjustment involves the differential regulation of vascular cambial activity between the lower (opposite wood) and upper (tension wood) sides of the leaning stem. We investigated the molecular mechanisms leading to the formation of differential wood types through a quantitative proteomic and phosphoproteomic analysis on poplar subjected to a gravitropic stimulus. We identified and quantified 675 phosphopeptides, corresponding to 468 phosphoproteins, and 3 763 nonphosphorylated peptides, corresponding to 1 155 proteins, in the differentiating xylem of straight-growing trees (control) and trees subjected to a gravitational stimulus during 8 weeks. About 1% of the peptides were specific to a wood type (straight, opposite, or tension wood). Proteins quantified in more than one type of wood were more numerous: a mixed linear model showed 389 phosphopeptides and 556 proteins to differ in abundance between tension wood and opposite wood. Twenty-one percent of the phosphoproteins identified here were described in their phosphorylated form for the first time. Our analyses revealed remarkable developmental molecular plasticity, with wood type-specific phosphorylation events, and highlighted the involvement of different proteins in the biosynthesis of cell wall components during the formation of the three types of wood.

DOI: 10.1021/acs.jproteome.5b00140
PubMed: 26112267

Links to Exploration step

pubmed:26112267

Le document en format XML

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<term>Gene Regulatory Networks (MeSH)</term>
<term>Gravitation (MeSH)</term>
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<term>Mass Spectrometry (MeSH)</term>
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<term>Peptides (metabolism)</term>
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<div type="abstract" xml:lang="en">Trees adjust their growth following forced changes in orientation to re-establish a vertical position. In angiosperms, this adjustment involves the differential regulation of vascular cambial activity between the lower (opposite wood) and upper (tension wood) sides of the leaning stem. We investigated the molecular mechanisms leading to the formation of differential wood types through a quantitative proteomic and phosphoproteomic analysis on poplar subjected to a gravitropic stimulus. We identified and quantified 675 phosphopeptides, corresponding to 468 phosphoproteins, and 3 763 nonphosphorylated peptides, corresponding to 1 155 proteins, in the differentiating xylem of straight-growing trees (control) and trees subjected to a gravitational stimulus during 8 weeks. About 1% of the peptides were specific to a wood type (straight, opposite, or tension wood). Proteins quantified in more than one type of wood were more numerous: a mixed linear model showed 389 phosphopeptides and 556 proteins to differ in abundance between tension wood and opposite wood. Twenty-one percent of the phosphoproteins identified here were described in their phosphorylated form for the first time. Our analyses revealed remarkable developmental molecular plasticity, with wood type-specific phosphorylation events, and highlighted the involvement of different proteins in the biosynthesis of cell wall components during the formation of the three types of wood.</div>
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<AbstractText>Trees adjust their growth following forced changes in orientation to re-establish a vertical position. In angiosperms, this adjustment involves the differential regulation of vascular cambial activity between the lower (opposite wood) and upper (tension wood) sides of the leaning stem. We investigated the molecular mechanisms leading to the formation of differential wood types through a quantitative proteomic and phosphoproteomic analysis on poplar subjected to a gravitropic stimulus. We identified and quantified 675 phosphopeptides, corresponding to 468 phosphoproteins, and 3 763 nonphosphorylated peptides, corresponding to 1 155 proteins, in the differentiating xylem of straight-growing trees (control) and trees subjected to a gravitational stimulus during 8 weeks. About 1% of the peptides were specific to a wood type (straight, opposite, or tension wood). Proteins quantified in more than one type of wood were more numerous: a mixed linear model showed 389 phosphopeptides and 556 proteins to differ in abundance between tension wood and opposite wood. Twenty-one percent of the phosphoproteins identified here were described in their phosphorylated form for the first time. Our analyses revealed remarkable developmental molecular plasticity, with wood type-specific phosphorylation events, and highlighted the involvement of different proteins in the biosynthesis of cell wall components during the formation of the three types of wood.</AbstractText>
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<Affiliation>‡Univ. Bordeaux, BIOGECO, UMR1202, F-33615 Pessac, France.</Affiliation>
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<DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName>
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<Keyword MajorTopicYN="N">cell wall</Keyword>
<Keyword MajorTopicYN="N">phosphoproteomics</Keyword>
<Keyword MajorTopicYN="N">poplar</Keyword>
<Keyword MajorTopicYN="N">proteomics</Keyword>
<Keyword MajorTopicYN="N">tension wood</Keyword>
<Keyword MajorTopicYN="N">wood formation</Keyword>
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<Year>2015</Year>
<Month>6</Month>
<Day>27</Day>
<Hour>6</Hour>
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<Day>9</Day>
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<ArticleId IdType="doi">10.1021/acs.jproteome.5b00140</ArticleId>
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   |texte=   Quantitative Proteomic and Phosphoproteomic Approaches for Deciphering the Signaling Pathway for Tension Wood Formation in Poplar.
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