Wohlfahrtiimonas populi sp. nov., isolated from symptomatic bark of a Populus × euramericana canker.
Identifieur interne : 001153 ( Main/Corpus ); précédent : 001152; suivant : 001154Wohlfahrtiimonas populi sp. nov., isolated from symptomatic bark of a Populus × euramericana canker.
Auteurs : Yong Li ; Wei Fang ; Han Xue ; Xu-Qi Yang ; Shou-Jiang Xie ; Lai-Fa WangSource :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2017.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Xanthomonadaceae (classification), Xanthomonadaceae (genetics), Xanthomonadaceae (isolation & purification).
- MESH :
- chemical , chemistry : Fatty Acids, Phospholipids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Xanthomonadaceae.
- genetics : Xanthomonadaceae.
- isolation & purification : Xanthomonadaceae.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, China, Phylogeny, Sequence Analysis, DNA.
Abstract
A Gram-stain-negative, facultatively anaerobic, motile, bacterial strain, 34C10-3-10T, was isolated from symptomatic bark tissue of a Populus ×euramericana canker. The isolate could grow between 10 and 37 °C, at pH 5 to 11, and in 0-3 % (w/v) NaCl. The strain was oxidase and catalase positive. The ubiquinone of strain 34C10-3-10T was Q-8. The polar lipid profile of strain 34C10-3-10T included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phospholipid, phosphatidylmonomethylethanolamine, phosphatidylserine; the major fatty acids were C18 : 1ω7c, C14 : 0 and C16 : 1ω7c/C16 : 1ω6c. The average nucleotide identity (ANI) values between strain 34C10-3-10T and the type strains of reference species Wohlfahrtiimonas chitiniclastica S5T and Wohlfahrtiimonas larvae KBL006T were lower than the proposed species boundary cut-off for ANI. The DNA G+C content was 37.1 mol%. Based on phenotypic and genotypic characteristics, strain 34C10-3-10T represents a novel species of genus Wohlfahrtiimonas; the name Wohlfahrtiimonas populi sp. nov. is proposed. The type strain is 34C10-3-10T (=CFCC 12747T=KCTC 52796T).
DOI: 10.1099/ijsem.0.002307
PubMed: 28945528
Links to Exploration step
pubmed:28945528Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Wohlfahrtiimonas populi sp. nov., isolated from symptomatic bark of a Populus × euramericana canker.</title>
<author><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>Forestry Bureau of Taishan, Taishan 529200, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name>
<affiliation><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Xie, Shou Jiang" sort="Xie, Shou Jiang" uniqKey="Xie S" first="Shou-Jiang" last="Xie">Shou-Jiang Xie</name>
<affiliation><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Wang, Lai Fa" sort="Wang, Lai Fa" uniqKey="Wang L" first="Lai-Fa" last="Wang">Lai-Fa Wang</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2017">2017</date>
<idno type="RBID">pubmed:28945528</idno>
<idno type="pmid">28945528</idno>
<idno type="doi">10.1099/ijsem.0.002307</idno>
<idno type="wicri:Area/Main/Corpus">001153</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001153</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Wohlfahrtiimonas populi sp. nov., isolated from symptomatic bark of a Populus × euramericana canker.</title>
<author><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>Forestry Bureau of Taishan, Taishan 529200, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name>
<affiliation><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Xie, Shou Jiang" sort="Xie, Shou Jiang" uniqKey="Xie S" first="Shou-Jiang" last="Xie">Shou-Jiang Xie</name>
<affiliation><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Wang, Lai Fa" sort="Wang, Lai Fa" uniqKey="Wang L" first="Lai-Fa" last="Wang">Lai-Fa Wang</name>
<affiliation><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation>
</affiliation>
</author>
</analytic>
<series><title level="j">International journal of systematic and evolutionary microbiology</title>
<idno type="eISSN">1466-5034</idno>
<imprint><date when="2017" type="published">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Bark (microbiology)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Xanthomonadaceae (classification)</term>
<term>Xanthomonadaceae (genetics)</term>
<term>Xanthomonadaceae (isolation & purification)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term>
<term>Phospholipids</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Xanthomonadaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Xanthomonadaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Xanthomonadaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>China</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">A Gram-stain-negative, facultatively anaerobic, motile, bacterial strain, 34C10-3-10<sup>T</sup>
, was isolated from symptomatic bark tissue of a Populus ×euramericana canker. The isolate could grow between 10 and 37 °C, at pH 5 to 11, and in 0-3 % (w/v) NaCl. The strain was oxidase and catalase positive. The ubiquinone of strain 34C10-3-10<sup>T</sup>
was Q-8. The polar lipid profile of strain 34C10-3-10<sup>T</sup>
included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phospholipid, phosphatidylmonomethylethanolamine, phosphatidylserine; the major fatty acids were C18 : 1ω7c, C14 : 0 and C16 : 1ω7c/C16 : 1ω6c. The average nucleotide identity (ANI) values between strain 34C10-3-10<sup>T</sup>
and the type strains of reference species Wohlfahrtiimonas chitiniclastica S5<sup>T</sup>
and Wohlfahrtiimonas larvae KBL006<sup>T</sup>
were lower than the proposed species boundary cut-off for ANI. The DNA G+C content was 37.1 mol%. Based on phenotypic and genotypic characteristics, strain 34C10-3-10<sup>T</sup>
represents a novel species of genus Wohlfahrtiimonas; the name Wohlfahrtiimonas populi sp. nov. is proposed. The type strain is 34C10-3-10<sup>T</sup>
(=CFCC 12747<sup>T</sup>
=KCTC 52796<sup>T</sup>
).</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28945528</PMID>
<DateCompleted><Year>2017</Year>
<Month>12</Month>
<Day>14</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>12</Month>
<Day>11</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>67</Volume>
<Issue>11</Issue>
<PubDate><Year>2017</Year>
<Month>Nov</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Wohlfahrtiimonas populi sp. nov., isolated from symptomatic bark of a Populus × euramericana canker.</ArticleTitle>
<Pagination><MedlinePgn>4424-4428</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.002307</ELocationID>
<Abstract><AbstractText>A Gram-stain-negative, facultatively anaerobic, motile, bacterial strain, 34C10-3-10<sup>T</sup>
, was isolated from symptomatic bark tissue of a Populus ×euramericana canker. The isolate could grow between 10 and 37 °C, at pH 5 to 11, and in 0-3 % (w/v) NaCl. The strain was oxidase and catalase positive. The ubiquinone of strain 34C10-3-10<sup>T</sup>
was Q-8. The polar lipid profile of strain 34C10-3-10<sup>T</sup>
included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phospholipid, phosphatidylmonomethylethanolamine, phosphatidylserine; the major fatty acids were C18 : 1ω7c, C14 : 0 and C16 : 1ω7c/C16 : 1ω6c. The average nucleotide identity (ANI) values between strain 34C10-3-10<sup>T</sup>
and the type strains of reference species Wohlfahrtiimonas chitiniclastica S5<sup>T</sup>
and Wohlfahrtiimonas larvae KBL006<sup>T</sup>
were lower than the proposed species boundary cut-off for ANI. The DNA G+C content was 37.1 mol%. Based on phenotypic and genotypic characteristics, strain 34C10-3-10<sup>T</sup>
represents a novel species of genus Wohlfahrtiimonas; the name Wohlfahrtiimonas populi sp. nov. is proposed. The type strain is 34C10-3-10<sup>T</sup>
(=CFCC 12747<sup>T</sup>
=KCTC 52796<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yong</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fang</LastName>
<ForeName>Wei</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Forestry Bureau of Taishan, Taishan 529200, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xue</LastName>
<ForeName>Han</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Xu-Qi</ForeName>
<Initials>XQ</Initials>
<AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xie</LastName>
<ForeName>Shou-Jiang</ForeName>
<Initials>SJ</Initials>
<AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Lai-Fa</ForeName>
<Initials>LF</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>09</Month>
<Day>25</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D044166" MajorTopicYN="N">Xanthomonadaceae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus × euramericana canker</Keyword>
<Keyword MajorTopicYN="N">Wohlfahrtiimonas</Keyword>
<Keyword MajorTopicYN="N">taxonomy</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2017</Year>
<Month>9</Month>
<Day>26</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>12</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2017</Year>
<Month>9</Month>
<Day>26</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">28945528</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002307</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001153 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001153 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Bois |area= PoplarV1 |flux= Main |étape= Corpus |type= RBID |clé= pubmed:28945528 |texte= Wohlfahrtiimonas populi sp. nov., isolated from symptomatic bark of a Populus × euramericana canker. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:28945528" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \ | NlmPubMed2Wicri -a PoplarV1
This area was generated with Dilib version V0.6.37. |