Identification and expression of CAMTA genes in Populus trichocarpa under biotic and abiotic stress.
Identifieur interne : 001028 ( Main/Corpus ); précédent : 001027; suivant : 001029Identification and expression of CAMTA genes in Populus trichocarpa under biotic and abiotic stress.
Auteurs : Ming Wei ; Xuemei Xu ; Chenghao LiSource :
- Scientific reports [ 2045-2322 ] ; 2017.
English descriptors
- KwdEn :
- Alternaria (pathogenicity), Alternariosis (microbiology), Calmodulin-Binding Proteins (genetics), Calmodulin-Binding Proteins (metabolism), Diuretics, Osmotic (toxicity), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Mannitol (toxicity), Plant Growth Regulators (toxicity), Plant Leaves (drug effects), Plant Leaves (genetics), Plant Leaves (microbiology), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (drug effects), Populus (genetics), Populus (microbiology), Promoter Regions, Genetic (MeSH), Sodium Chloride (toxicity), Stress, Physiological (MeSH).
- MESH :
- chemical , genetics : Calmodulin-Binding Proteins, Plant Proteins.
- chemical , metabolism : Calmodulin-Binding Proteins, Plant Proteins.
- drug effects : Plant Leaves, Populus.
- genetics : Plant Leaves, Populus.
- microbiology : Alternariosis, Plant Leaves, Populus.
- pathogenicity : Alternaria.
- chemical , toxicity : Diuretics, Osmotic, Mannitol, Plant Growth Regulators, Sodium Chloride.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Promoter Regions, Genetic, Stress, Physiological.
Abstract
The calmodulin-binding transcription activators (CAMTAs) transcription factor family plays an important role in normal plant growth and development, as well as in biotic and abiotic stress resistance. In this study, we identified seven CAMTA genes across the whole genome of Populus trichocarpa and analyzed the expression patterns of PtCAMTAs in the root and leaf tissues. Promoter cis-element analysis indicated that most CAMTA genes contained stress- or phytohormone-related cis-elements. Quantitative real-time reverse transcription-PCR (qRT-PCR) indicated indicated that PtCAMTAs were induced by mannitol, NaCl, cold stress, pathogenic infection with A. alternata, and phytohormone treatments with abscisic acid, salicylic acid, and methyl jasmonate. We analyzed the expression of homologous genes between P. trichocarpa and P. ussuriensis and alternative splicing forms of PtCAMTA genes under cold stress. We also performed a network interaction analysis for PtCAMTA proteins to predict their interactions and associations. The results of the present study serve as a basis for future functional studies on the Populus CAMTA family.
DOI: 10.1038/s41598-017-18219-8
PubMed: 29263356
PubMed Central: PMC5738416
Links to Exploration step
pubmed:29263356Le document en format XML
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uniqKey="Xu X" first="Xuemei" last="Xu">Xuemei Xu</name><affiliation><nlm:affiliation>Library of Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Chenghao" sort="Li, Chenghao" uniqKey="Li C" first="Chenghao" last="Li">Chenghao Li</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. chli0@163.com.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alternaria (pathogenicity)</term><term>Alternariosis (microbiology)</term><term>Calmodulin-Binding Proteins (genetics)</term><term>Calmodulin-Binding Proteins (metabolism)</term><term>Diuretics, Osmotic (toxicity)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Mannitol (toxicity)</term><term>Plant Growth Regulators (toxicity)</term><term>Plant Leaves (drug effects)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (microbiology)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Populus (drug effects)</term><term>Populus (genetics)</term><term>Populus (microbiology)</term><term>Promoter Regions, Genetic (MeSH)</term><term>Sodium Chloride (toxicity)</term><term>Stress, Physiological (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Calmodulin-Binding Proteins</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Calmodulin-Binding Proteins</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Alternariosis</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Alternaria</term></keywords><keywords scheme="MESH" type="chemical" qualifier="toxicity" xml:lang="en"><term>Diuretics, Osmotic</term><term>Mannitol</term><term>Plant Growth Regulators</term><term>Sodium Chloride</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Promoter Regions, Genetic</term><term>Stress, Physiological</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The calmodulin-binding transcription activators (CAMTAs) transcription factor family plays an important role in normal plant growth and development, as well as in biotic and abiotic stress resistance. In this study, we identified seven CAMTA genes across the whole genome of Populus trichocarpa and analyzed the expression patterns of PtCAMTAs in the root and leaf tissues. Promoter cis-element analysis indicated that most CAMTA genes contained stress- or phytohormone-related cis-elements. Quantitative real-time reverse transcription-PCR (qRT-PCR) indicated indicated that PtCAMTAs were induced by mannitol, NaCl, cold stress, pathogenic infection with A. alternata, and phytohormone treatments with abscisic acid, salicylic acid, and methyl jasmonate. We analyzed the expression of homologous genes between P. trichocarpa and P. ussuriensis and alternative splicing forms of PtCAMTA genes under cold stress. We also performed a network interaction analysis for PtCAMTA proteins to predict their interactions and associations. The results of the present study serve as a basis for future functional studies on the Populus CAMTA family.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29263356</PMID><DateCompleted><Year>2019</Year><Month>08</Month><Day>21</Day></DateCompleted><DateRevised><Year>2019</Year><Month>08</Month><Day>21</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>12</Month><Day>20</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Identification and expression of CAMTA genes in Populus trichocarpa under biotic and abiotic stress.</ArticleTitle><Pagination><MedlinePgn>17910</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-017-18219-8</ELocationID><Abstract><AbstractText>The calmodulin-binding transcription activators (CAMTAs) transcription factor family plays an important role in normal plant growth and development, as well as in biotic and abiotic stress resistance. In this study, we identified seven CAMTA genes across the whole genome of Populus trichocarpa and analyzed the expression patterns of PtCAMTAs in the root and leaf tissues. Promoter cis-element analysis indicated that most CAMTA genes contained stress- or phytohormone-related cis-elements. Quantitative real-time reverse transcription-PCR (qRT-PCR) indicated indicated that PtCAMTAs were induced by mannitol, NaCl, cold stress, pathogenic infection with A. alternata, and phytohormone treatments with abscisic acid, salicylic acid, and methyl jasmonate. We analyzed the expression of homologous genes between P. trichocarpa and P. ussuriensis and alternative splicing forms of PtCAMTA genes under cold stress. We also performed a network interaction analysis for PtCAMTA proteins to predict their interactions and associations. The results of the present study serve as a basis for future functional studies on the Populus CAMTA family.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wei</LastName><ForeName>Ming</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Xuemei</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Library of Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Chenghao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China. 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