Sinorhodobacter populi sp. nov., isolated from the symptomatic bark tissue of Populus × euramericana canker.
Identifieur interne : 000A27 ( Main/Corpus ); précédent : 000A26; suivant : 000A28Sinorhodobacter populi sp. nov., isolated from the symptomatic bark tissue of Populus × euramericana canker.
Auteurs : Guan-Tang Xu ; Chungen Piao ; Ju-Pu Chang ; Li-Min Guo ; Xu-Qi Yang ; Yong LiSource :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2019.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), Cardenolides (chemistry), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Plant Diseases (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Rhodobacteraceae (classification), Rhodobacteraceae (isolation & purification), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , chemistry : Cardenolides, Fatty Acids, Phospholipids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- geographic : China.
- classification : Rhodobacteraceae.
- isolation & purification : Rhodobacteraceae.
- microbiology : Plant Bark, Plant Diseases, Populus.
- Bacterial Typing Techniques, Base Composition, Phylogeny, Sequence Analysis, DNA.
Abstract
We isolated five novel bacterial strains from symptomatic bark tissue of Populus × euramericana canker that were Gram-stain-negative, non-motile, aerobic oxidase-negative and catalase-positive. Growth occurred at 10-41 °C and at pH 5.0-7.0, with optimum growth at 30 °C and pH 7.0. Additionally, growth occurred in conditions of 0-5 % (w/v) salinity, but not above 7 % NaCl. The 16S rRNA gene sequences of the novel strains shared the highest similarity with Sinorhodobacter ferrireducens SgZ-3T (97.1 %). The average nucleotide identity values between the novel strains and two type strains (S.inorhodobacter ferrireducens CCTCC AB2012026T and 'Sinorhodobacter hungdaonensis' CGMCC 1.12963T) were 78.4-78.9 %, which were lower than the proposed species boundary cut-off (95-96 %). The main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified lipid and phosphatidylcholine. The main respiratory quinone was Q-10, and major fatty acids were C18 : 1ω7c and/or C18 : 1ω6c. Based on data from a polyphasic taxonomy study, the novel strains represent a novel species of the genus Sinorhodobacter, for which the name Sinorhodobacter populi sp. nov. is proposed. The type strain is sk2b1T (=CFCC 14580T=KCTC 52802T).
DOI: 10.1099/ijsem.0.003300
PubMed: 30785392
Links to Exploration step
pubmed:30785392Le document en format XML
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<author><name sortKey="Piao, Chungen" sort="Piao, Chungen" uniqKey="Piao C" first="Chungen" last="Piao">Chungen Piao</name>
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<author><name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name>
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<author><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name>
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<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Bark (microbiology)</term>
<term>Plant Diseases (microbiology)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhodobacteraceae (classification)</term>
<term>Rhodobacteraceae (isolation & purification)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
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<term>Fatty Acids</term>
<term>Phospholipids</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term>
<term>Plant Diseases</term>
<term>Populus</term>
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<keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term>
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<front><div type="abstract" xml:lang="en">We isolated five novel bacterial strains from symptomatic bark tissue of Populus × euramericana canker that were Gram-stain-negative, non-motile, aerobic oxidase-negative and catalase-positive. Growth occurred at 10-41 °C and at pH 5.0-7.0, with optimum growth at 30 °C and pH 7.0. Additionally, growth occurred in conditions of 0-5 % (w/v) salinity, but not above 7 % NaCl. The 16S rRNA gene sequences of the novel strains shared the highest similarity with Sinorhodobacter ferrireducens SgZ-3<sup>T</sup>
(97.1 %). The average nucleotide identity values between the novel strains and two type strains (S.inorhodobacter ferrireducens CCTCC AB2012026<sup>T</sup>
and 'Sinorhodobacter hungdaonensis' CGMCC 1.12963<sup>T</sup>
) were 78.4-78.9 %, which were lower than the proposed species boundary cut-off (95-96 %). The main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified lipid and phosphatidylcholine. The main respiratory quinone was Q-10, and major fatty acids were C18 : 1ω7c and/or C18 : 1ω6c. Based on data from a polyphasic taxonomy study, the novel strains represent a novel species of the genus Sinorhodobacter, for which the name Sinorhodobacter populi sp. nov. is proposed. The type strain is sk2b1<sup>T</sup>
(=CFCC 14580<sup>T</sup>
=KCTC 52802<sup>T</sup>
).</div>
</front>
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<Abstract><AbstractText>We isolated five novel bacterial strains from symptomatic bark tissue of Populus × euramericana canker that were Gram-stain-negative, non-motile, aerobic oxidase-negative and catalase-positive. Growth occurred at 10-41 °C and at pH 5.0-7.0, with optimum growth at 30 °C and pH 7.0. Additionally, growth occurred in conditions of 0-5 % (w/v) salinity, but not above 7 % NaCl. The 16S rRNA gene sequences of the novel strains shared the highest similarity with Sinorhodobacter ferrireducens SgZ-3<sup>T</sup>
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and 'Sinorhodobacter hungdaonensis' CGMCC 1.12963<sup>T</sup>
) were 78.4-78.9 %, which were lower than the proposed species boundary cut-off (95-96 %). The main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified lipid and phosphatidylcholine. The main respiratory quinone was Q-10, and major fatty acids were C18 : 1ω7c and/or C18 : 1ω6c. Based on data from a polyphasic taxonomy study, the novel strains represent a novel species of the genus Sinorhodobacter, for which the name Sinorhodobacter populi sp. nov. is proposed. The type strain is sk2b1<sup>T</sup>
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=KCTC 52802<sup>T</sup>
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