Transcriptome analysis of transcription factor genes under multiple abiotic stresses in Populus simonii × P.nigra.
Identifieur interne : 000924 ( Main/Corpus ); précédent : 000923; suivant : 000925Transcriptome analysis of transcription factor genes under multiple abiotic stresses in Populus simonii × P.nigra.
Auteurs : Wenjing Yao ; Boru Zhou ; Xuemei Zhang ; Kai Zhao ; Zihan Cheng ; Tingbo JiangSource :
- Gene [ 1879-0038 ] ; 2019.
English descriptors
- KwdEn :
- Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Plants, Genetically Modified (genetics), Populus (genetics), Populus (physiology), Salt Tolerance (MeSH), Sequence Analysis, RNA (methods), Stress, Physiological (MeSH), Transcription Factors (genetics).
- MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Plants, Genetically Modified, Populus.
- methods : Gene Expression Profiling, Sequence Analysis, RNA.
- physiology : Populus.
- Gene Expression Regulation, Plant, Multigene Family, Phylogeny, Salt Tolerance, Stress, Physiological.
Abstract
Transcription factor (TF) genes play essential roles in abiotic stress responses as master switches in complex regulatory networks. In the present study, the transcript abundance of 4287 TF genes in Populus simonii × P.nigra were profiled under NaCl, KCl, CdCl2 and PEG stresses, respectively. A total of 118 up-regulated and 226 down-regulated TFs were identified to be shared in the four stress conditions. Among the top seven TF families (ERF, NAC, WRKY, MYB, bHLH, C2H2, bZIP), there were 76 up-regulated TFs found common in the four stresses, and 67% of them were likely to be involved in stress responses. We identified three TFs, which can enhance stress tolerance of transgenic plants, were members of the most significantly up-regulated genes in the respective TF family. Among them, a highly salt-inducible ERF gene, ERF76, was proved to activate the expression of other TFs in the transgenic poplar lines overexpressing ERF76. Transcriptome analysis indicated there was a synergistic effect of TFs on improving salinity tolerance of the transgenic plants. Of significant interest in the study is the discovery of the role and interactions of various TF genes under multiple stress conditions.
DOI: 10.1016/j.gene.2019.04.071
PubMed: 31029602
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Electronic address: tbjiang@yahoo.com.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:31029602</idno><idno type="pmid">31029602</idno><idno type="doi">10.1016/j.gene.2019.04.071</idno><idno type="wicri:Area/Main/Corpus">000924</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000924</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Transcriptome analysis of transcription factor genes under multiple abiotic stresses in Populus simonii × P.nigra.</title><author><name sortKey="Yao, Wenjing" sort="Yao, Wenjing" uniqKey="Yao W" first="Wenjing" last="Yao">Wenjing Yao</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China; Bamboo Research Institute, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhou, Boru" sort="Zhou, Boru" uniqKey="Zhou B" first="Boru" last="Zhou">Boru Zhou</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Xuemei" sort="Zhang, Xuemei" uniqKey="Zhang X" first="Xuemei" last="Zhang">Xuemei Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhao, Kai" sort="Zhao, Kai" uniqKey="Zhao K" first="Kai" last="Zhao">Kai Zhao</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</nlm:affiliation></affiliation></author><author><name sortKey="Cheng, Zihan" sort="Cheng, Zihan" uniqKey="Cheng Z" first="Zihan" last="Cheng">Zihan Cheng</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</nlm:affiliation></affiliation></author><author><name sortKey="Jiang, Tingbo" sort="Jiang, Tingbo" uniqKey="Jiang T" first="Tingbo" last="Jiang">Tingbo Jiang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China. Electronic address: tbjiang@yahoo.com.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Gene</title><idno type="eISSN">1879-0038</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Expression Profiling (methods)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Multigene Family (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (genetics)</term><term>Plants, Genetically Modified (genetics)</term><term>Populus (genetics)</term><term>Populus (physiology)</term><term>Salt Tolerance (MeSH)</term><term>Sequence Analysis, RNA (methods)</term><term>Stress, Physiological (MeSH)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plants, Genetically Modified</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term><term>Sequence Analysis, RNA</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Multigene Family</term><term>Phylogeny</term><term>Salt Tolerance</term><term>Stress, Physiological</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Transcription factor (TF) genes play essential roles in abiotic stress responses as master switches in complex regulatory networks. In the present study, the transcript abundance of 4287 TF genes in Populus simonii × P.nigra were profiled under NaCl, KCl, CdCl<sub>2</sub> and PEG stresses, respectively. A total of 118 up-regulated and 226 down-regulated TFs were identified to be shared in the four stress conditions. Among the top seven TF families (ERF, NAC, WRKY, MYB, bHLH, C2H2, bZIP), there were 76 up-regulated TFs found common in the four stresses, and 67% of them were likely to be involved in stress responses. We identified three TFs, which can enhance stress tolerance of transgenic plants, were members of the most significantly up-regulated genes in the respective TF family. Among them, a highly salt-inducible ERF gene, ERF76, was proved to activate the expression of other TFs in the transgenic poplar lines overexpressing ERF76. Transcriptome analysis indicated there was a synergistic effect of TFs on improving salinity tolerance of the transgenic plants. Of significant interest in the study is the discovery of the role and interactions of various TF genes under multiple stress conditions.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31029602</PMID><DateCompleted><Year>2019</Year><Month>06</Month><Day>24</Day></DateCompleted><DateRevised><Year>2019</Year><Month>06</Month><Day>24</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-0038</ISSN><JournalIssue CitedMedium="Internet"><Volume>707</Volume><PubDate><Year>2019</Year><Month>Jul</Month><Day>30</Day></PubDate></JournalIssue><Title>Gene</Title><ISOAbbreviation>Gene</ISOAbbreviation></Journal><ArticleTitle>Transcriptome analysis of transcription factor genes under multiple abiotic stresses in Populus simonii × P.nigra.</ArticleTitle><Pagination><MedlinePgn>189-197</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0378-1119(19)30429-9</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.gene.2019.04.071</ELocationID><Abstract><AbstractText>Transcription factor (TF) genes play essential roles in abiotic stress responses as master switches in complex regulatory networks. In the present study, the transcript abundance of 4287 TF genes in Populus simonii × P.nigra were profiled under NaCl, KCl, CdCl<sub>2</sub> and PEG stresses, respectively. A total of 118 up-regulated and 226 down-regulated TFs were identified to be shared in the four stress conditions. Among the top seven TF families (ERF, NAC, WRKY, MYB, bHLH, C2H2, bZIP), there were 76 up-regulated TFs found common in the four stresses, and 67% of them were likely to be involved in stress responses. We identified three TFs, which can enhance stress tolerance of transgenic plants, were members of the most significantly up-regulated genes in the respective TF family. Among them, a highly salt-inducible ERF gene, ERF76, was proved to activate the expression of other TFs in the transgenic poplar lines overexpressing ERF76. Transcriptome analysis indicated there was a synergistic effect of TFs on improving salinity tolerance of the transgenic plants. Of significant interest in the study is the discovery of the role and interactions of various TF genes under multiple stress conditions.</AbstractText><CopyrightInformation>Copyright © 2019 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yao</LastName><ForeName>Wenjing</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China; Bamboo Research Institute, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Boru</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xuemei</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Kai</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Zihan</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Tingbo</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin 150040, China. Electronic address: tbjiang@yahoo.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>04</Month><Day>25</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Gene</MedlineTA><NlmUniqueID>7706761</NlmUniqueID><ISSNLinking>0378-1119</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055049" MajorTopicYN="N">Salt Tolerance</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013312" MajorTopicYN="Y">Stress, Physiological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Abiotic stress</Keyword><Keyword MajorTopicYN="N">Poplar</Keyword><Keyword MajorTopicYN="N">RNA-Seq</Keyword><Keyword MajorTopicYN="N">TF interaction</Keyword><Keyword MajorTopicYN="N">Transcription factor</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>12</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>04</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>04</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>4</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>6</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>4</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31029602</ArticleId><ArticleId IdType="pii">S0378-1119(19)30429-9</ArticleId><ArticleId IdType="doi">10.1016/j.gene.2019.04.071</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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