PoplarV1, Main, Corpus, bibRecord, 000861

The Genomic Landscape of Crossover Interference in the Desert Tree Populus euphratica.

Identifieur interne : 000861 ( Main/Corpus ); précédent : 000860; suivant : 000862

The Genomic Landscape of Crossover Interference in the Desert Tree Populus euphratica.

Auteurs : Ping Wang ; Libo Jiang ; Meixia Ye ; Xuli Zhu ; Rongling Wu

Source :

Frontiers in genetics [ 1664-8021 ] ; 2019.

RBID : pubmed:31156703

Abstract

Crossover (CO) interference is a universal phenomenon by which the occurrence of one CO event inhibits the simultaneous occurrence of other COs along a chromosome. Because of its critical role in the evolution of genome structure and organization, the cytological and molecular mechanisms underlying CO interference have been extensively investigated. However, the genome-wide distribution of CO interference and its interplay with sex-, stress-, and age-induced differentiation remain poorly understood. Multi-point linkage analysis has proven to be a powerful tool for landscaping CO interference, especially within species for which CO mutants are rarely available. We implemented four-point linkage analysis to landscape a detailed picture of how CO interference is distributed through the entire genome of Populus euphratica, the only forest tree that can survive and grow in saline desert. We identified an extensive occurrence of CO interference, and found that its strength depends on the length of chromosomes and the genomic locations within the chromosome. We detected high-order CO interference, possibly suggesting a highly complex mechanism crucial for P. euphratica to grow, reproduce, and evolve in its harsh environment.

DOI: 10.3389/fgene.2019.00440
PubMed: 31156703
PubMed Central: PMC6530421

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pubmed:31156703

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<author><name sortKey="Wang, Ping" sort="Wang, Ping" uniqKey="Wang P" first="Ping" last="Wang">Ping Wang</name>
<affiliation><nlm:affiliation>Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.</nlm:affiliation>
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<author><name sortKey="Jiang, Libo" sort="Jiang, Libo" uniqKey="Jiang L" first="Libo" last="Jiang">Libo Jiang</name>
<affiliation><nlm:affiliation>Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.</nlm:affiliation>
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<author><name sortKey="Ye, Meixia" sort="Ye, Meixia" uniqKey="Ye M" first="Meixia" last="Ye">Meixia Ye</name>
<affiliation><nlm:affiliation>Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.</nlm:affiliation>
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<author><name sortKey="Zhu, Xuli" sort="Zhu, Xuli" uniqKey="Zhu X" first="Xuli" last="Zhu">Xuli Zhu</name>
<affiliation><nlm:affiliation>Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.</nlm:affiliation>
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<author><name sortKey="Wu, Rongling" sort="Wu, Rongling" uniqKey="Wu R" first="Rongling" last="Wu">Rongling Wu</name>
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<affiliation><nlm:affiliation>Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA, United States.</nlm:affiliation>
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<front><div type="abstract" xml:lang="en">Crossover (CO) interference is a universal phenomenon by which the occurrence of one CO event inhibits the simultaneous occurrence of other COs along a chromosome. Because of its critical role in the evolution of genome structure and organization, the cytological and molecular mechanisms underlying CO interference have been extensively investigated. However, the genome-wide distribution of CO interference and its interplay with sex-, stress-, and age-induced differentiation remain poorly understood. Multi-point linkage analysis has proven to be a powerful tool for landscaping CO interference, especially within species for which CO mutants are rarely available. We implemented four-point linkage analysis to landscape a detailed picture of how CO interference is distributed through the entire genome of <i>Populus euphratica</i>
, the only forest tree that can survive and grow in saline desert. We identified an extensive occurrence of CO interference, and found that its strength depends on the length of chromosomes and the genomic locations within the chromosome. We detected high-order CO interference, possibly suggesting a highly complex mechanism crucial for <i>P. euphratica</i>
 to grow, reproduce, and evolve in its harsh environment.</div>
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<Abstract><AbstractText>Crossover (CO) interference is a universal phenomenon by which the occurrence of one CO event inhibits the simultaneous occurrence of other COs along a chromosome. Because of its critical role in the evolution of genome structure and organization, the cytological and molecular mechanisms underlying CO interference have been extensively investigated. However, the genome-wide distribution of CO interference and its interplay with sex-, stress-, and age-induced differentiation remain poorly understood. Multi-point linkage analysis has proven to be a powerful tool for landscaping CO interference, especially within species for which CO mutants are rarely available. We implemented four-point linkage analysis to landscape a detailed picture of how CO interference is distributed through the entire genome of <i>Populus euphratica</i>
, the only forest tree that can survive and grow in saline desert. We identified an extensive occurrence of CO interference, and found that its strength depends on the length of chromosomes and the genomic locations within the chromosome. We detected high-order CO interference, possibly suggesting a highly complex mechanism crucial for <i>P. euphratica</i>
 to grow, reproduce, and evolve in its harsh environment.</AbstractText>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Ping</ForeName>
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<AffiliationInfo><Affiliation>Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.</Affiliation>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">euphrates poplar</Keyword>
<Keyword MajorTopicYN="N">four-point analysis</Keyword>
<Keyword MajorTopicYN="N">genetic interference</Keyword>
<Keyword MajorTopicYN="N">mapping population</Keyword>
<Keyword MajorTopicYN="N">meiotic crossover</Keyword>
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The Genomic Landscape of Crossover Interference in the Desert Tree Populus euphratica.

The Genomic Landscape of Crossover Interference in the Desert Tree Populus euphratica.

Source :

Abstract

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